Komagataeibacter saccharivorans strain JH1 plasmid p59558.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.
Draft Genome Sequence of Komagataeibacter saccharivorans strain JH1
Submitted (22-FEB-2019) Department of Genomic and Applied Microbiology, Georg-August University Goettingen, Institute of Microbiology and Genetics, Grisebachstr. 8, Goettingen, Lower Saxony 37077, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP036408.1.\nBacteria and source DNA available from Prof. Dr. Rolf Daniel.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.4\nGenome Coverage :: missing\nSequencing Technology :: Illumina; NanoPore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/19/2023 01:36:45\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,464\nCDSs (total) :: 3,388\nGenes (coding) :: 3,300\nCDSs (with protein) :: 3,300\nGenes (RNA) :: 76\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 4\nPseudo Genes (total) :: 88\nCDSs (without protein) :: 88\nPseudo Genes (ambiguous residues) :: 0 of 88\nPseudo Genes (frameshifted) :: 43 of 88\nPseudo Genes (incomplete) :: 56 of 88\nPseudo Genes (internal stop) :: 30 of 88\nPseudo Genes (multiple problems) :: 32 of 88\n##Genome-Annotation-Data-END##\nCOMPLETENESS: not full length.
COORDINATES: similar to AA sequence:RefSeq:WP_019087510.1
GO:0003824 - catalytic activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007396061.1
COORDINATES: protein motif:HMM:NF014273.2
ParB N-terminal domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_019463270.1
COORDINATES: similar to AA sequence:RefSeq:WP_007396072.1
COORDINATES: similar to AA sequence:RefSeq:WP_007396073.1
COORDINATES: similar to AA sequence:RefSeq:WP_003625670.1
COORDINATES: similar to AA sequence:RefSeq:WP_003625676.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007396075.1
GO:0006260 - DNA replication [Evidence IEA]
DUF3991 and TOPRIM domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007396077.1
COORDINATES: protein motif:HMM:NF014069.2
COORDINATES: protein motif:HMM:NF018381.2
COORDINATES: similar to AA sequence:RefSeq:WP_011251394.1
COORDINATES: similar to AA sequence:RefSeq:WP_010513026.1
COORDINATES: protein motif:HMM:NF012334.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_011581556.1
COORDINATES: similar to AA sequence:RefSeq:WP_003619040.1
COORDINATES: protein motif:HMM:NF023737.2
COORDINATES: similar to AA sequence:RefSeq:WP_019922448.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003619036.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018042295.1
lipocalin-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003619033.1
GO:0004471 - malate dehydrogenase (decarboxylating) (NAD+) activity [Evidence IEA]; GO:0004470 - malic enzyme activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007635327.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF033580.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008892295.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010504850.1
COORDINATES: similar to AA sequence:RefSeq:WP_003626735.1
COORDINATES: similar to AA sequence:RefSeq:WP_010507163.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012813405.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_010504833.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612098.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_010504831.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010504824.1
COORDINATES: similar to AA sequence:RefSeq:WP_010504822.1