Komagataeibacter saccharivorans strain JH1 plasmid p92689, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.
Draft Genome Sequence of Komagataeibacter saccharivorans strain JH1
Submitted (22-FEB-2019) Department of Genomic and Applied Microbiology, Georg-August University Goettingen, Institute of Microbiology and Genetics, Grisebachstr. 8, Goettingen, Lower Saxony 37077, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP036407.1.\nBacteria and source DNA available from Prof. Dr. Rolf Daniel.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.4\nGenome Coverage :: missing\nSequencing Technology :: Illumina; NanoPore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/19/2023 01:36:45\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,464\nCDSs (total) :: 3,388\nGenes (coding) :: 3,300\nCDSs (with protein) :: 3,300\nGenes (RNA) :: 76\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 4\nPseudo Genes (total) :: 88\nCDSs (without protein) :: 88\nPseudo Genes (ambiguous residues) :: 0 of 88\nPseudo Genes (frameshifted) :: 43 of 88\nPseudo Genes (incomplete) :: 56 of 88\nPseudo Genes (internal stop) :: 30 of 88\nPseudo Genes (multiple problems) :: 32 of 88\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_012554950.1
GO:0009288 - bacterial-type flagellum [Evidence IEA]
GO:0001539 - cilium or flagellum-dependent cell motility [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012662.2
COORDINATES: similar to AA sequence:RefSeq:WP_010666782.1
flagellar hook capping FlgD N-terminal domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012225122.1
COORDINATES: similar to AA sequence:RefSeq:WP_012225120.1
COORDINATES: similar to AA sequence:RefSeq:WP_012225118.1
COORDINATES: similar to AA sequence:RefSeq:WP_012225117.1
GO:0071973 - bacterial-type flagellum-dependent cell motility [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012554967.1
COORDINATES: similar to AA sequence:RefSeq:WP_010666584.1
COORDINATES: similar to AA sequence:RefSeq:WP_012554958.1
COORDINATES: similar to AA sequence:RefSeq:WP_012554983.1
COORDINATES: similar to AA sequence:RefSeq:WP_012225163.1
GO:0009424 - bacterial-type flagellum hook [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012554981.1
COORDINATES: similar to AA sequence:RefSeq:WP_007092335.1
GO:0009426 - bacterial-type flagellum basal body, distal rod [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012554980.1
GO:0009428 - bacterial-type flagellum basal body, distal rod, P ring [Evidence IEA]
flagellar basal body P-ring formation chaperone FlgA
COORDINATES: similar to AA sequence:RefSeq:WP_007283161.1
GO:0009427 - bacterial-type flagellum basal body, distal rod, L ring [Evidence IEA]
GO:0003774 - cytoskeletal motor activity [Evidence IEA]
flagellar basal body L-ring protein FlgH
COORDINATES: similar to AA sequence:RefSeq:WP_012225133.1
The bacterial flagellar biogenesis protein FliP forms a type III secretion system (T3SS)-type pore required for flagellar assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.
flagellar type III secretion system pore protein FliP
COORDINATES: similar to AA sequence:RefSeq:WP_012554971.1
GO:0044781 - bacterial-type flagellum organization [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012225131.1
COORDINATES: similar to AA sequence:RefSeq:WP_012225130.1
COORDINATES: similar to AA sequence:RefSeq:WP_012554970.1
GO:0009433 - bacterial-type flagellum basal body, C ring [Evidence IEA]
GO:0006935 - chemotaxis [Evidence IEA]; GO:0001539 - cilium or flagellum-dependent cell motility [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012554969.1
GO:0009431 - bacterial-type flagellum basal body, MS ring [Evidence IEA]
flagellar basal-body MS-ring/collar protein FliF
COORDINATES: similar to AA sequence:RefSeq:WP_012554949.1
COORDINATES: protein motif:HMM:NF025025.2
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013567.2
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: protein motif:HMM:NF012377.2
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0071704 - organic substance metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF016800.2
COORDINATES: similar to AA sequence:RefSeq:WP_007795414.1
COORDINATES: protein motif:HMM:NF014606.2
GO:0016020 - membrane [Evidence IEA]; GO:0042597 - periplasmic space [Evidence IEA]
GO:0015159 - polysaccharide transmembrane transporter activity [Evidence IEA]
polysaccharide biosynthesis/export family protein
COORDINATES: protein motif:HMM:NF013718.2
COORDINATES: protein motif:HMM:NF015748.2
WecB/TagA/CpsF family glycosyltransferase
COORDINATES: protein motif:HMM:TIGR03025.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0032508 - DNA duplex unwinding [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_018980947.1
EscU/YscU/HrcU family type III secretion system export apparatus switch protein
COORDINATES: similar to AA sequence:RefSeq:WP_012225087.1
COORDINATES: similar to AA sequence:RefSeq:WP_012225085.1
COORDINATES: similar to AA sequence:RefSeq:WP_012225082.1
GO:0003774 - cytoskeletal motor activity [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA]
flagellar hook-basal body complex protein FliE
COORDINATES: similar to AA sequence:RefSeq:WP_010666347.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284583.1
GO:0009425 - bacterial-type flagellum basal body [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012225077.1
COORDINATES: protein motif:HMM:NF013632.2
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: similar to AA sequence:RefSeq:WP_014500577.1
GO:0008767 - UDP-galactopyranose mutase activity [Evidence IEA]
GO:0009273 - peptidoglycan-based cell wall biogenesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012225168.1
COORDINATES: similar to AA sequence:RefSeq:WP_012225169.1
COORDINATES: similar to AA sequence:RefSeq:WP_012554985.1
GO:0071973 - bacterial-type flagellum-dependent cell motility [Evidence IEA]; GO:0006935 - chemotaxis [Evidence IEA]
flagellar basal body-associated FliL family protein
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF012245.2
COORDINATES: protein motif:HMM:NF013731.2
GO:0006935 - chemotaxis [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012972787.1
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_012813118.1
COORDINATES: similar to AA sequence:RefSeq:WP_007282930.1
GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IEA]
GO:0006012 - galactose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012225091.1
flagellar hook-basal body complex protein
COORDINATES: similar to AA sequence:RefSeq:WP_012554966.1
COORDINATES: similar to AA sequence:RefSeq:WP_018980956.1
COORDINATES: similar to AA sequence:RefSeq:WP_012554973.1
COORDINATES: similar to AA sequence:RefSeq:WP_012225140.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012225142.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012554975.1
COORDINATES: similar to AA sequence:RefSeq:WP_012554976.1
COORDINATES: similar to AA sequence:RefSeq:WP_012554977.1
GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0008984 - protein-glutamate methylesterase activity [Evidence IEA]; GO:0050568 - protein-glutamine glutaminase activity [Evidence IEA]
GO:0006935 - chemotaxis [Evidence IEA]; GO:0018277 - protein deamination [Evidence IEA]; GO:0006482 - protein demethylation [Evidence IEA]
chemotaxis response regulator protein-glutamate methylesterase
COORDINATES: similar to AA sequence:RefSeq:WP_004621657.1
COORDINATES: similar to AA sequence:RefSeq:WP_012554978.1
COORDINATES: similar to AA sequence:RefSeq:WP_012225127.1
COORDINATES: similar to AA sequence:RefSeq:WP_012227243.1
COORDINATES: similar to AA sequence:RefSeq:WP_012554957.1
COORDINATES: protein motif:HMM:NF024821.2
COORDINATES: similar to AA sequence:RefSeq:WP_007198618.1
COORDINATES: similar to AA sequence:RefSeq:WP_012225095.1
COORDINATES: similar to AA sequence:RefSeq:WP_012225098.1
COORDINATES: similar to AA sequence:RefSeq:WP_012554956.1
COORDINATES: similar to AA sequence:RefSeq:WP_012225073.1
COORDINATES: similar to AA sequence:RefSeq:WP_015072608.1
GO:0009428 - bacterial-type flagellum basal body, distal rod, P ring [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
flagellar basal body P-ring protein FlgI
COORDINATES: similar to AA sequence:RefSeq:WP_012225071.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012554952.1