Paraburkholderia atlantica plasmid pBC201, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Paraburkholderia.
Genome sequences of Burkholderia sp. strains CCGE1002 and H160, isolated from legume nodules in Mexico and Brazil
Complete sequence of plasmid1 of Burkholderia sp. CCGE1002
Submitted (19-APR-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP002016.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4085555\nSource DNA and organism available from Esperanza Martinez-Romero\n(Centro de Ciencias Genomicas--http://ccg.unam.mx)\nContacts: James M. Tiedje (tiedjej@msu.edu)\n Tanja Woyke (microbe@cuba.jgi-psf.org)\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nBurkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate\nfrom Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604,\nLongitude: -104.952. Additionally, it forms nodules in Phaseolus\nvulgaris beans. It contributes to Nitrogen fixation and CO2\nfixation in the tropics.\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Metadata-START##\nOrganism Display Name :: Burkholderia sp. CCGE1002\nGOLD Stamp ID :: Gi03922\nOxygen Requirement :: Facultative\nCell Shape :: Rod-shaped\nMotility :: Motile\nSporulation :: Nonsporulating\nTemperature Range :: Mesophile\nGram Staining :: gram-\nBiotic Relationship :: Free living\nHabitat :: Host, Rhizosphere, Rhizosphere-colonizing\n##Metadata-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/22/2023 14:53:26\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,285\nCDSs (total) :: 7,186\nGenes (coding) :: 6,901\nCDSs (with protein) :: 6,901\nGenes (RNA) :: 99\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 74\nncRNAs :: 4\nPseudo Genes (total) :: 285\nCDSs (without protein) :: 285\nPseudo Genes (ambiguous residues) :: 0 of 285\nPseudo Genes (frameshifted) :: 138 of 285\nPseudo Genes (incomplete) :: 208 of 285\nPseudo Genes (internal stop) :: 44 of 285\nPseudo Genes (multiple problems) :: 95 of 285\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_018432878.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_018432876.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432875.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094387.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432873.1
GO:0003896 - DNA primase activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
primase-helicase zinc-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018432872.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432871.1
COORDINATES: similar to AA sequence:RefSeq:WP_008649407.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432869.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432868.1
nuclease-related domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018432867.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432866.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432865.1
GO:0045893 - positive regulation of DNA-templated transcription [Evidence IEA]; GO:1902208 - regulation of bacterial-type flagellum assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013094397.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432862.1
COORDINATES: similar to AA sequence:RefSeq:WP_013699990.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432860.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432859.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432858.1
COORDINATES: similar to AA sequence:RefSeq:WP_012367220.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432856.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432855.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432854.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432853.1
toxin co-regulated pilus biosynthesis Q family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018432852.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013094410.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_018432850.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013094412.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432848.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432847.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432846.1
COORDINATES: similar to AA sequence:RefSeq:WP_009771279.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094417.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432843.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_006386538.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
PDDEXK nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015004453.1
COORDINATES: similar to AA sequence:RefSeq:WP_007749692.1
COORDINATES: similar to AA sequence:RefSeq:WP_019020093.1
COORDINATES: similar to AA sequence:RefSeq:WP_007866033.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014151674.1
COORDINATES: similar to AA sequence:RefSeq:WP_015040282.1
IucA/IucC family siderophore biosynthesis protein
COORDINATES: protein motif:HMM:TIGR03950.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0008199 - ferric iron binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0033214 - siderophore-dependent iron import into cell [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007866019.1
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_000147566.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF023134.2
CGNR zinc finger domain-containing protein
COORDINATES: protein motif:HMM:NF014898.2
GO:0015074 - DNA integration [Evidence IEA]
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_085938460.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_036245303.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018437105.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094435.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611313.1
COORDINATES: similar to AA sequence:RefSeq:WP_004533799.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611314.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012354745.1
COORDINATES: similar to AA sequence:RefSeq:WP_011493648.1
COORDINATES: similar to AA sequence:RefSeq:WP_018435806.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011767508.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558108.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012430592.1
COORDINATES: similar to AA sequence:RefSeq:WP_018435811.1
toluene-4-monooxygenase system B family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018989564.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012430595.1
COORDINATES: similar to AA sequence:RefSeq:WP_004535955.1
COORDINATES: similar to AA sequence:RefSeq:WP_018417885.1
COORDINATES: similar to AA sequence:RefSeq:WP_018435814.1
aromatic/alkene monooxygenase hydroxylase subunit beta
COORDINATES: protein motif:HMM:TIGR01841.1
Members of this family are phasins (small proteins associated with inclusions such as PHA granules). Note that several different families of phasins have been named PhaP despite very little sequence similarity to each other.; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001536669.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_004272601.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010112063.1
COORDINATES: similar to AA sequence:RefSeq:WP_013104584.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094450.1
COORDINATES: similar to AA sequence:RefSeq:WP_013516321.1
COORDINATES: similar to AA sequence:RefSeq:WP_010913715.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013700154.1
COORDINATES: similar to AA sequence:RefSeq:WP_011546517.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019982.2
COORDINATES: similar to AA sequence:RefSeq:WP_011153965.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406798.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094455.1
COORDINATES: similar to AA sequence:RefSeq:WP_011544710.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406792.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011258200.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0019346 - transsulfuration [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004406101.1
carboxyl transferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015004780.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406795.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007578536.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013094461.1
COORDINATES: similar to AA sequence:RefSeq:WP_007734766.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012406741.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_015004742.1
GO:0004020 - adenylylsulfate kinase activity [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018434991.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018434992.1
GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0009877 - nodulation [Evidence IEA]; GO:0009312 - oligosaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003581511.1
COORDINATES: similar to AA sequence:RefSeq:WP_018434994.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354663.1
COORDINATES: similar to AA sequence:RefSeq:WP_018003749.1
nodulation factor ABC transporter ATP-binding protein NodI
COORDINATES: similar to AA sequence:RefSeq:WP_018434997.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019856461.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018434998.1
COORDINATES: similar to AA sequence:RefSeq:WP_018434999.1
COORDINATES: similar to AA sequence:RefSeq:WP_018435000.1
COORDINATES: similar to AA sequence:RefSeq:WP_018435001.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013094477.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0009399 - nitrogen fixation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
nif-specific transcriptional activator NifA
COORDINATES: similar to AA sequence:RefSeq:WP_012406757.1
GO:0009399 - nitrogen fixation [Evidence IEA]
nitrogenase iron-molybdenum cofactor biosynthesis protein NifE
COORDINATES: similar to AA sequence:RefSeq:WP_007177224.1
nitrogenase iron-molybdenum cofactor biosynthesis protein NifN
COORDINATES: similar to AA sequence:RefSeq:WP_011880153.1
GO:0051540 - metal cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017773477.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094482.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094483.1
GO:0030151 - molybdenum ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00027.1
GO:0008168 - methyltransferase activity [Evidence IEA]
TipAS antibiotic-recognition domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012406576.1
COORDINATES: protein motif:HMM:NF017528.2
COORDINATES: similar to AA sequence:RefSeq:WP_007733337.1
COORDINATES: similar to AA sequence:RefSeq:WP_018435010.1
COORDINATES: similar to AA sequence:RefSeq:WP_010921623.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_230625430.1
COORDINATES: similar to AA sequence:RefSeq:NP_858152.1
COORDINATES: protein motif:HMM:NF033517.1
COORDINATES: protein motif:HMM:NF015038.2
COORDINATES: similar to AA sequence:RefSeq:WP_018423241.1
COORDINATES: similar to AA sequence:RefSeq:WP_018435014.1
4Fe-4S dicluster domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011880113.1
COORDINATES: similar to AA sequence:RefSeq:WP_018435016.1
electron transfer flavoprotein subunit alpha/FixB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018435017.1
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018435018.1
nitrogenase stabilizing/protective protein NifW
COORDINATES: similar to AA sequence:RefSeq:WP_014725849.1
GO:0004410 - homocitrate synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018435020.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
nitrogenase cofactor biosynthesis protein NifB
COORDINATES: similar to AA sequence:RefSeq:WP_020202109.1
COORDINATES: similar to AA sequence:RefSeq:WP_018423196.1
iron-sulfur cluster biosynthesis family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017773454.1
COORDINATES: similar to AA sequence:RefSeq:WP_007177241.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406776.1
COORDINATES: similar to AA sequence:RefSeq:WP_018423187.1
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_076611235.1
IS5-like element ISBusp3 family transposase
COORDINATES: protein motif:HMM:NF033545.0
COORDINATES: similar to AA sequence:RefSeq:WP_017773464.1
COORDINATES: similar to AA sequence:RefSeq:WP_018435027.1
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014725866.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094509.1
GO:0016611 - iron-iron nitrogenase complex [Evidence IEA]; GO:0016612 - molybdenum-iron nitrogenase complex [Evidence IEA]; GO:0016613 - vanadium-iron nitrogenase complex [Evidence IEA]
GO:0016163 - nitrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011801729.1
GO:0016612 - molybdenum-iron nitrogenase complex [Evidence IEA]
nitrogenase molybdenum-iron protein alpha chain
COORDINATES: similar to AA sequence:RefSeq:WP_017773471.1
nitrogenase molybdenum-iron protein subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_007588291.1
COORDINATES: similar to AA sequence:RefSeq:WP_006414230.1
GO:0009486 - cytochrome bo3 ubiquinol oxidase activity [Evidence IEA]
GO:0015990 - electron transport coupled proton transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018435034.1
cytochrome o ubiquinol oxidase subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_011657331.1
cytochrome o ubiquinol oxidase subunit III
COORDINATES: similar to AA sequence:RefSeq:WP_011352504.1
cytochrome o ubiquinol oxidase subunit IV
COORDINATES: similar to AA sequence:RefSeq:WP_018435037.1
COORDINATES: similar to AA sequence:RefSeq:WP_018435038.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018435039.1
COORDINATES: similar to AA sequence:RefSeq:WP_011870197.1
COORDINATES: similar to AA sequence:RefSeq:WP_012701796.1
COORDINATES: similar to AA sequence:RefSeq:WP_011492099.1
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:NF005543.0
COORDINATES: protein motif:HMM:NF017072.2
COORDINATES: similar to AA sequence:RefSeq:WP_006412423.1
COORDINATES: similar to AA sequence:RefSeq:WP_012699613.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611615.1
COORDINATES: similar to AA sequence:RefSeq:WP_011493650.1
COORDINATES: similar to AA sequence:RefSeq:WP_013588671.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611088.1
COORDINATES: similar to AA sequence:RefSeq:WP_013588670.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094533.1
GO:0004180 - carboxypeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013588668.1
COORDINATES: similar to AA sequence:RefSeq:WP_017333066.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094535.1
COORDINATES: similar to AA sequence:RefSeq:WP_013588665.1
COORDINATES: similar to AA sequence:RefSeq:WP_013588664.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_013588663.1
COORDINATES: similar to AA sequence:RefSeq:WP_013588662.1
COORDINATES: similar to AA sequence:RefSeq:WP_013588661.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094541.1
COORDINATES: similar to AA sequence:RefSeq:WP_013588659.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_011660168.1
COORDINATES: similar to AA sequence:RefSeq:WP_015004415.1
COORDINATES: similar to AA sequence:RefSeq:WP_015002793.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020566319.1
type IV toxin-antitoxin system AbiEi family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_013588608.1
COORDINATES: similar to AA sequence:RefSeq:WP_013588607.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_013588606.1
COORDINATES: similar to AA sequence:RefSeq:WP_001262004.1
COORDINATES: similar to AA sequence:RefSeq:WP_002718011.1
COORDINATES: similar to AA sequence:RefSeq:NP_252556.1
COORDINATES: protein motif:HMM:NF033578.1
COORDINATES: protein motif:HMM:NF017416.2
COORDINATES: similar to AA sequence:RefSeq:WP_018432926.1
GO:0015474 - autotransporter activity [Evidence IEA]
GO:0046819 - protein secretion by the type V secretion system [Evidence IEA]
autotransporter outer membrane beta-barrel domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013588605.1
COORDINATES: similar to AA sequence:RefSeq:WP_013588604.1
COORDINATES: similar to AA sequence:RefSeq:WP_006759494.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012336742.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612052.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406497.1
COORDINATES: protein motif:HMM:NF013862.2
COORDINATES: similar to AA sequence:RefSeq:WP_013094560.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094561.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_013588710.1
COORDINATES: similar to AA sequence:RefSeq:WP_013588711.1
COORDINATES: similar to AA sequence:RefSeq:WP_013588712.1
COORDINATES: similar to AA sequence:RefSeq:WP_013588713.1
COORDINATES: similar to AA sequence:RefSeq:WP_013588714.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004550795.1
GO:0030429 - kynureninase activity [Evidence IEA]
GO:0019441 - tryptophan catabolic process to kynurenine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013094568.1
COORDINATES: similar to AA sequence:RefSeq:WP_013588717.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018436849.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
anthranilate 1,2-dioxygenase electron transfer component AntC
COORDINATES: similar to AA sequence:RefSeq:WP_008921252.1
GO:0018618 - anthranilate 1,2-dioxygenase (deaminating, decarboxylating) activity [Evidence IEA]
GO:0006569 - tryptophan catabolic process [Evidence IEA]
anthranilate 1,2-dioxygenase small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018419200.1
anthranilate 1,2-dioxygenase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013094586.1
COORDINATES: similar to AA sequence:RefSeq:WP_006170003.1
COORDINATES: protein motif:HMM:NF024673.2
COORDINATES: similar to AA sequence:RefSeq:WP_012406784.1
COORDINATES: similar to AA sequence:RefSeq:WP_006482428.1
COORDINATES: similar to AA sequence:RefSeq:WP_047215127.1
COORDINATES: similar to AA sequence:RefSeq:WP_012492245.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611695.1
COORDINATES: similar to AA sequence:RefSeq:WP_018437114.1
GO:0046417 - chorismate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018437111.1
COORDINATES: similar to AA sequence:RefSeq:WP_012806800.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406571.1
COORDINATES: similar to AA sequence:RefSeq:WP_008344889.1
COORDINATES: similar to AA sequence:RefSeq:WP_018437110.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_010089612.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094581.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611734.1
COORDINATES: similar to AA sequence:RefSeq:WP_007738725.1
COORDINATES: similar to AA sequence:RefSeq:WP_017878279.1
COORDINATES: similar to AA sequence:RefSeq:WP_020069104.1
COORDINATES: similar to AA sequence:RefSeq:WP_012434107.1
COORDINATES: similar to AA sequence:RefSeq:WP_006478052.1
COORDINATES: similar to AA sequence:RefSeq:WP_011885761.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_076612074.1
COORDINATES: similar to AA sequence:RefSeq:WP_013092201.1
COORDINATES: similar to AA sequence:RefSeq:WP_011545436.1
COORDINATES: protein motif:HMM:NF024824.2
COORDINATES: protein motif:HMM:NF013257.2
COORDINATES: similar to AA sequence:RefSeq:WP_018421064.1
COORDINATES: protein motif:HMM:NF012388.2
GO:0030598 - rRNA N-glycosylase activity [Evidence IEA]
GO:0017148 - negative regulation of translation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611305.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611646.1
COORDINATES: similar to AA sequence:RefSeq:WP_018435701.1
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
4'-phosphopantetheinyl transferase superfamily protein
COORDINATES: similar to AA sequence:RefSeq:WP_076612008.1
COORDINATES: similar to AA sequence:RefSeq:WP_018435697.1
COORDINATES: similar to AA sequence:RefSeq:WP_018435696.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018436458.1
COORDINATES: similar to AA sequence:RefSeq:WP_018436459.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013094596.1
COORDINATES: similar to AA sequence:RefSeq:WP_007000167.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612276.1
COORDINATES: similar to AA sequence:RefSeq:WP_018436464.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010099870.1
GO:0008660 - 1-aminocyclopropane-1-carboxylate deaminase activity [Evidence IEA]
GO:0042217 - 1-aminocyclopropane-1-carboxylate catabolic process [Evidence IEA]
1-aminocyclopropane-1-carboxylate deaminase
COORDINATES: similar to AA sequence:RefSeq:WP_018436544.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094625.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611749.1
COORDINATES: similar to AA sequence:RefSeq:WP_013646194.1
COORDINATES: similar to AA sequence:RefSeq:WP_009968117.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094604.1
COORDINATES: protein motif:HMM:NF024431.2
COORDINATES: similar to AA sequence:RefSeq:WP_013699891.1
COORDINATES: similar to AA sequence:RefSeq:WP_012404184.1
COORDINATES: similar to AA sequence:RefSeq:WP_020479943.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094614.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094623.1
COORDINATES: similar to AA sequence:RefSeq:WP_014251827.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013094617.1
COORDINATES: similar to AA sequence:RefSeq:WP_007737701.1
CaiB/BaiF CoA-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013699597.1
COORDINATES: similar to AA sequence:RefSeq:WP_015004729.1
COORDINATES: similar to AA sequence:RefSeq:WP_013587663.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS1182-like element ISBusp4 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_006749962.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094602.1
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_013092495.1
COORDINATES: similar to AA sequence:RefSeq:WP_012425931.1
COORDINATES: protein motif:HMM:NF024242.2
COORDINATES: similar to AA sequence:RefSeq:WP_008920551.1
COORDINATES: similar to AA sequence:RefSeq:WP_008920550.1
COORDINATES: similar to AA sequence:RefSeq:WP_008058076.1
COORDINATES: protein motif:HMM:NF017634.2
COORDINATES: protein motif:HMM:NF036537.2
COORDINATES: protein motif:HMM:NF019498.2
COORDINATES: protein motif:HMM:NF024921.2
substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012301.2
hybrid sensor histidine kinase/response regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013093562.1
COORDINATES: similar to AA sequence:RefSeq:WP_007577590.1
COORDINATES: similar to AA sequence:RefSeq:WP_008920260.1
GO:0005515 - protein binding [Evidence IEA]
SET domain-containing protein-lysine N-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011301857.1
COORDINATES: similar to AA sequence:RefSeq:WP_018425166.1
COORDINATES: similar to AA sequence:RefSeq:WP_018433269.1
COORDINATES: similar to AA sequence:RefSeq:WP_007746136.1
COORDINATES: similar to AA sequence:RefSeq:WP_007178896.1
GO:0033608 - formyl-CoA transferase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0033611 - oxalate catabolic process [Evidence IEA]; GO:0009636 - response to toxic substance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007178897.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0008949 - oxalyl-CoA decarboxylase activity [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
GO:0033611 - oxalate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007178898.1
GO:0015297 - antiporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012428532.1
COORDINATES: similar to AA sequence:RefSeq:WP_008344483.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612148.1
COORDINATES: similar to AA sequence:RefSeq:WP_013699837.1
COORDINATES: similar to AA sequence:RefSeq:WP_018422439.1
COORDINATES: similar to AA sequence:RefSeq:WP_008920156.1
COORDINATES: similar to AA sequence:RefSeq:WP_007577963.1
COORDINATES: similar to AA sequence:RefSeq:WP_018420282.1
COORDINATES: protein motif:HMM:NF024394.2
COORDINATES: similar to AA sequence:RefSeq:WP_008983327.1
COORDINATES: similar to AA sequence:RefSeq:WP_008111133.1
COORDINATES: similar to AA sequence:RefSeq:WP_006298570.1
COORDINATES: similar to AA sequence:RefSeq:WP_012367364.1
COORDINATES: similar to AA sequence:RefSeq:WP_011879712.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006053174.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013094685.1
COORDINATES: similar to AA sequence:RefSeq:WP_020071169.1
COORDINATES: similar to AA sequence:RefSeq:WP_012706359.1
COORDINATES: similar to AA sequence:RefSeq:WP_008049604.1
COORDINATES: similar to AA sequence:RefSeq:WP_007576385.1
COORDINATES: protein motif:HMM:NF003818.1
COORDINATES: protein motif:HMM:NF016970.2
COORDINATES: protein motif:HMM:NF021364.2
COORDINATES: protein motif:HMM:NF017262.2
COORDINATES: similar to AA sequence:RefSeq:WP_014898655.1
GO:0042597 - periplasmic space [Evidence IEA]
GO:0005507 - copper ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014898656.1
COORDINATES: similar to AA sequence:RefSeq:WP_010114513.1
COORDINATES: similar to AA sequence:RefSeq:WP_015437217.1
COORDINATES: protein motif:HMM:NF020123.2
COORDINATES: similar to AA sequence:RefSeq:WP_009277710.1
COORDINATES: similar to AA sequence:RefSeq:WP_013106948.1
COORDINATES: similar to AA sequence:RefSeq:WP_013337786.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343511.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012218069.1
COORDINATES: similar to AA sequence:RefSeq:WP_012211070.1
COORDINATES: protein motif:HMM:NF023095.2
COORDINATES: similar to AA sequence:RefSeq:WP_012211072.1
COORDINATES: similar to AA sequence:RefSeq:WP_011875595.1
GO:0047134 - protein-disulfide reductase (NAD(P)) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007584674.1
COORDINATES: similar to AA sequence:RefSeq:WP_012338825.1
COORDINATES: similar to AA sequence:RefSeq:WP_013341695.1
COORDINATES: similar to AA sequence:RefSeq:WP_007743547.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007584678.1
COORDINATES: similar to AA sequence:RefSeq:WP_014616459.1
COORDINATES: similar to AA sequence:RefSeq:WP_012430973.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432953.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432952.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432951.1
COORDINATES: similar to AA sequence:RefSeq:WP_020071155.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432949.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432948.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432946.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432944.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432943.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432942.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432941.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094728.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432939.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094730.1
COORDINATES: similar to AA sequence:RefSeq:WP_006757255.1
GO:0003674 - molecular_function [Evidence IEA]
Members of this protein family are the putative conjugative coupling factor, TraD, as the term is used for the SXT and TOL plasmid systems; Derived by automated computational analysis using gene prediction method: Protein Homology.
conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_013094732.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094733.1
GO:0030255 - protein secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013094734.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432933.1
VirB4 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_018432932.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432931.1
COORDINATES: similar to AA sequence:RefSeq:WP_011875532.1
COORDINATES: similar to AA sequence:RefSeq:WP_013591560.1
COORDINATES: similar to AA sequence:RefSeq:WP_017777414.1
H-NS family nucleoid-associated regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_018432920.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432919.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432918.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432917.1
COORDINATES: similar to AA sequence:RefSeq:WP_006757267.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094747.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432914.1
COORDINATES: similar to AA sequence:RefSeq:WP_012367179.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094752.1
GO:0019867 - outer membrane [Evidence IEA]
glycine zipper 2TM domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013094754.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432907.1
COORDINATES: similar to AA sequence:RefSeq:WP_011875520.1
COORDINATES: similar to AA sequence:RefSeq:WP_013954400.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432904.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432903.1
COORDINATES: similar to AA sequence:RefSeq:WP_012217989.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432900.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094762.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585604.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585606.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0140658 - ATP-dependent chromatin remodeler activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007585608.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432889.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094767.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432887.1
COORDINATES: similar to AA sequence:RefSeq:WP_012367193.1
COORDINATES: similar to AA sequence:RefSeq:WP_006493945.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432884.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432883.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432882.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094774.1
Lar family restriction alleviation protein
COORDINATES: similar to AA sequence:RefSeq:WP_018432880.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432879.1