Kovacikia minuta CCNUW1 strain CCNU0001 plasmid pB, complete sequence.
Bacteria; Cyanobacteriota; Cyanophyceae; Pseudanabaenales; Leptolyngbyaceae; Kovacikia; Kovacikia minuta.
Morphological characteristics of Kovacikia minutum CCNU0001 on the white light and far red light
Submitted (13-SEP-2021) College of Life Sciences, Central China Normal University, Central China Normal University, wuhan, Hubei 430079, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP083584.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP3 v. v2.2.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 120.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/26/2023 05:04:44\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 8,133\nCDSs (total) :: 8,009\nGenes (coding) :: 7,582\nCDSs (with protein) :: 7,582\nGenes (RNA) :: 124\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 114\nncRNAs :: 4\nPseudo Genes (total) :: 427\nCDSs (without protein) :: 427\nPseudo Genes (ambiguous residues) :: 0 of 427\nPseudo Genes (frameshifted) :: 264 of 427\nPseudo Genes (incomplete) :: 192 of 427\nPseudo Genes (internal stop) :: 38 of 427\nPseudo Genes (multiple problems) :: 61 of 427\nCRISPR Arrays :: 7\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006617522.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008179757.1
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003160512.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
type I restriction endonuclease subunit R
COORDINATES: similar to AA sequence:RefSeq:WP_019661320.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
class I SAM-dependent DNA methyltransferase
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012176141.1
restriction system-associated AAA family ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_012176142.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994065.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_010994064.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0007059 - chromosome segregation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015128115.1
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: similar to AA sequence:RefSeq:WP_011320691.1
COORDINATES: protein motif:HMM:NF019537.2
COORDINATES: similar to AA sequence:RefSeq:WP_010476132.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010999926.1
COORDINATES: similar to AA sequence:RefSeq:WP_015126624.1
COORDINATES: protein motif:HMM:NF024573.2
COORDINATES: similar to AA sequence:RefSeq:WP_002779230.1
COORDINATES: similar to AA sequence:RefSeq:WP_002769480.1
COORDINATES: similar to AA sequence:RefSeq:WP_004878711.1
GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009769460.1
GO:0009009 - site-specific recombinase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0009294 - DNA-mediated transformation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006104765.1
GO:0005515 - protein binding [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:NF017829.2
COORDINATES: protein motif:HMM:NF013676.2
GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - DNA transposition [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015198003.1
COORDINATES: protein motif:HMM:NF039257.1
COORDINATES: similar to AA sequence:RefSeq:WP_019498052.1
GO:0030261 - chromosome condensation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013258.2
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein