Halorussus halophilus strain ZS-3 plasmid unnamed2, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haladaptataceae; Halorussus.
Complete genome of Halorussus sp. ZS-3, an extremely halophlic archaeon isolated from a marine solar saltern
Submitted (30-SEP-2019) School of Food & Biological Engineering, Jiangsu University, 301 Xuefu Road, Jingkou District, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP044525.1.\nBacteria and source DNA available from School of Food and\nBiological EngineeringJiangsu University.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: JUL-2018\nAssembly Method :: Celera Assembler v. June-2018\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 279.0x\nSequencing Technology :: PacBio; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/30/2023 10:55:07\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,476\nCDSs (total) :: 4,419\nGenes (coding) :: 4,384\nCDSs (with protein) :: 4,384\nGenes (RNA) :: 57\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 2\nPseudo Genes (total) :: 35\nCDSs (without protein) :: 35\nPseudo Genes (ambiguous residues) :: 0 of 35\nPseudo Genes (frameshifted) :: 3 of 35\nPseudo Genes (incomplete) :: 28 of 35\nPseudo Genes (internal stop) :: 8 of 35\nPseudo Genes (multiple problems) :: 3 of 35\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007977718.1
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007983409.1
COORDINATES: similar to AA sequence:RefSeq:WP_007983406.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008423320.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863928.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762318.1
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0009166 - nucleotide catabolic process [Evidence IEA]
5'-nucleotidase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009762317.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004048648.1
COORDINATES: similar to AA sequence:RefSeq:WP_004965208.1
GO:0004803 - transposase activity [Evidence IEA]
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006431920.1
GO:0046872 - metal ion binding [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
heavy metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006183218.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004594613.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
plastocyanin/azurin family copper-binding protein
COORDINATES: protein motif:HMM:NF012314.2
COORDINATES: similar to AA sequence:RefSeq:WP_007980757.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111135.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945352.1
carbamoyltransferase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007976885.1
GO:0005951 - carbamoyl-phosphate synthase complex [Evidence IEA]
GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0009220 - pyrimidine ribonucleotide biosynthetic process [Evidence IEA]
glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_004266987.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143721.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007978440.1
COORDINATES: similar to AA sequence:RefSeq:WP_008385526.1
COORDINATES: similar to AA sequence:RefSeq:WP_007981912.1
GO:0020037 - heme binding [Evidence IEA]
GO:0017004 - cytochrome complex assembly [Evidence IEA]; GO:0017003 - protein-heme linkage [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007981910.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
GO:0015439 - ABC-type heme transporter activity [Evidence IEA]
GO:0015886 - heme transport [Evidence IEA]
heme ABC exporter ATP-binding protein CcmA
COORDINATES: similar to AA sequence:RefSeq:WP_008421322.1
GO:0015232 - heme transmembrane transporter activity [Evidence IEA]
GO:0017004 - cytochrome complex assembly [Evidence IEA]; GO:0015886 - heme transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF025006.2
carboxypeptidase regulatory-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007981905.1
GO:0017004 - cytochrome complex assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004052637.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007981901.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007981899.1
cytochrome c biogenesis CcdA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004956955.1
COORDINATES: protein motif:HMM:TIGR03102.1
COORDINATES: similar to AA sequence:RefSeq:WP_008311831.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004515854.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018258920.1
COORDINATES: similar to AA sequence:RefSeq:WP_006629965.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048321.1
COORDINATES: similar to AA sequence:RefSeq:WP_007979199.1
COORDINATES: similar to AA sequence:RefSeq:WP_007980966.1
COORDINATES: similar to AA sequence:RefSeq:WP_007273832.1
YeeE/YedE thiosulfate transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008418137.1
COORDINATES: similar to AA sequence:RefSeq:WP_008385542.1
COORDINATES: similar to AA sequence:RefSeq:WP_008422626.1
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006432672.1
COORDINATES: similar to AA sequence:RefSeq:WP_009375481.1
COORDINATES: protein motif:HMM:NF025054.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF027245.2
bacterio-opsin activator domain-containing protein
COORDINATES: protein motif:HMM:NF036897.2
COORDINATES: similar to AA sequence:RefSeq:WP_007976233.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0048502 - ABC-type thiamine transporter activity [Evidence IEA]; GO:0030975 - thiamine binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
GO:0030974 - thiamine pyrophosphate transmembrane transport [Evidence IEA]; GO:0015888 - thiamine transport [Evidence IEA]
thiamine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004062408.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222290.1
COORDINATES: similar to AA sequence:RefSeq:WP_005556490.1
COORDINATES: similar to AA sequence:RefSeq:WP_007274384.1
COORDINATES: similar to AA sequence:RefSeq:WP_007276065.1
COORDINATES: similar to AA sequence:RefSeq:WP_007975838.1
COORDINATES: similar to AA sequence:RefSeq:WP_004518643.1
COORDINATES: similar to AA sequence:RefSeq:WP_009367660.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008892631.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006057158.1
COORDINATES: similar to AA sequence:RefSeq:WP_014052487.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143314.1
GO:0032559 - adenyl ribonucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004060471.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060470.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060468.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006166239.1
COORDINATES: similar to AA sequence:RefSeq:WP_004041293.1
COORDINATES: similar to AA sequence:RefSeq:WP_008456947.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762257.1
COORDINATES: similar to AA sequence:RefSeq:WP_020221492.1
COORDINATES: similar to AA sequence:RefSeq:WP_009367706.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014555918.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594499.1
COORDINATES: similar to AA sequence:RefSeq:WP_008313462.1
COORDINATES: similar to AA sequence:RefSeq:WP_008015356.1
COORDINATES: similar to AA sequence:RefSeq:WP_012660138.1
GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008524597.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054163.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053212.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008524572.1
VapC toxin family PIN domain ribonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_008527098.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054393.1
COORDINATES: protein motif:HMM:NF019325.2
COORDINATES: similar to AA sequence:RefSeq:WP_008526269.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009367687.1
COORDINATES: similar to AA sequence:RefSeq:WP_004216445.1
COORDINATES: similar to AA sequence:RefSeq:WP_006057042.1
GO:0003824 - catalytic activity [Evidence IEA]
fumarylacetoacetate hydrolase family protein
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008416235.1
COORDINATES: protein motif:HMM:NF012738.2
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012235.2
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004216304.1
COORDINATES: protein motif:HMM:NF012706.2
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004968610.1
COORDINATES: similar to AA sequence:RefSeq:WP_006653019.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007694000.1
COORDINATES: similar to AA sequence:RefSeq:WP_011572751.1
COORDINATES: protein motif:HMM:NF024986.2
COORDINATES: similar to AA sequence:RefSeq:WP_012659962.1
COORDINATES: similar to AA sequence:RefSeq:WP_007981503.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF018452.2
COORDINATES: similar to AA sequence:RefSeq:WP_008014428.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090076.1
COORDINATES: similar to AA sequence:RefSeq:WP_015762446.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035215.1
COORDINATES: protein motif:HMM:NF012630.2
GO:0031012 - extracellular matrix [Evidence IEA]
GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_012945091.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945092.1
COORDINATES: similar to AA sequence:RefSeq:WP_007108536.1
COORDINATES: similar to AA sequence:RefSeq:WP_008446347.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_006187008.1
COORDINATES: similar to AA sequence:RefSeq:WP_007981358.1
COORDINATES: similar to AA sequence:RefSeq:WP_007142736.1
COORDINATES: similar to AA sequence:RefSeq:WP_007975917.1
COORDINATES: similar to AA sequence:RefSeq:WP_004054293.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015499 - formate transmembrane transporter activity [Evidence IEA]
GO:0015724 - formate transport [Evidence IEA]
formate/nitrite transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006078555.1
TrkA C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004043378.1
COORDINATES: protein motif:HMM:NF007497.0
GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004968190.1
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: protein motif:HMM:NF024771.2
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008124197.1
COORDINATES: protein motif:HMM:NF013088.2
COORDINATES: similar to AA sequence:RefSeq:WP_009334849.1
COORDINATES: protein motif:HMM:NF024092.2
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006065818.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667489.1
COORDINATES: similar to AA sequence:RefSeq:WP_004045464.1
COORDINATES: similar to AA sequence:RefSeq:WP_008161168.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004217284.1
COORDINATES: protein motif:HMM:NF013481.2
aldehyde ferredoxin oxidoreductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011323837.1
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: similar to AA sequence:RefSeq:WP_005038983.1
COORDINATES: similar to AA sequence:RefSeq:WP_007693354.1
gamma-glutamyltransferase family protein
COORDINATES: protein motif:HMM:NF013706.2
COORDINATES: similar to AA sequence:RefSeq:WP_007741875.1
putative sulfate exporter family transporter
COORDINATES: protein motif:HMM:NF014164.2
GO:0004177 - aminopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013132.2
COORDINATES: similar to AA sequence:RefSeq:WP_005557219.1
COORDINATES: similar to AA sequence:RefSeq:WP_006076645.1
COORDINATES: protein motif:HMM:NF018979.2
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006111277.1
tripartite tricarboxylate transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_007997842.1
GO:0042597 - periplasmic space [Evidence IEA]
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007689587.1
COORDINATES: similar to AA sequence:RefSeq:WP_005042076.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009378097.1
COORDINATES: protein motif:HMM:NF015216.2
GO:0018836 - alkylmercury lyase activity [Evidence IEA]
GO:0046413 - organomercury catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013446652.1
COORDINATES: similar to AA sequence:RefSeq:WP_006053329.1
COORDINATES: similar to AA sequence:RefSeq:WP_004059187.1
COORDINATES: similar to AA sequence:RefSeq:WP_006076977.1
COORDINATES: similar to AA sequence:RefSeq:WP_004059183.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004059181.1
GO:0016829 - lyase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007274178.1
COORDINATES: similar to AA sequence:RefSeq:WP_014052795.1
COORDINATES: similar to AA sequence:RefSeq:WP_008573057.1
COORDINATES: similar to AA sequence:RefSeq:WP_015789100.1
COORDINATES: similar to AA sequence:RefSeq:WP_007345502.1
COORDINATES: similar to AA sequence:RefSeq:WP_007543159.1
DUF2080 family transposase-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_005533339.1
COORDINATES: similar to AA sequence:RefSeq:WP_007981092.1
COORDINATES: protein motif:HMM:NF024502.2
phage integrase SAM-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006054537.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - DNA transposition [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006667849.1
GO:0019239 - deaminase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005043281.1
COORDINATES: similar to AA sequence:RefSeq:WP_004047740.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_007980881.1
COORDINATES: similar to AA sequence:RefSeq:WP_007980879.1
COORDINATES: similar to AA sequence:RefSeq:WP_007980877.1
GO:0019213 - deacetylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007693657.1
COORDINATES: similar to AA sequence:RefSeq:WP_012807590.1
COORDINATES: similar to AA sequence:RefSeq:WP_007980871.1
COORDINATES: similar to AA sequence:RefSeq:WP_007980867.1
COORDINATES: similar to AA sequence:RefSeq:WP_007980865.1
COORDINATES: similar to AA sequence:RefSeq:WP_018129018.1
COORDINATES: similar to AA sequence:RefSeq:WP_007980860.1
COORDINATES: similar to AA sequence:RefSeq:WP_007980858.1
COORDINATES: similar to AA sequence:RefSeq:WP_007980856.1
COORDINATES: similar to AA sequence:RefSeq:WP_007980854.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_007131751.1
COORDINATES: similar to AA sequence:RefSeq:WP_008320811.1
COORDINATES: similar to AA sequence:RefSeq:WP_007980849.1
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007980848.1
COORDINATES: similar to AA sequence:RefSeq:WP_007980847.1
COORDINATES: similar to AA sequence:RefSeq:WP_004056416.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]