Bacteroides zhangwenhongii strain HF-5287 plasmid pla1, complete sequence.
Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.
Bacteroides sp. nov., isolated from feces of human
Submitted (31-JUL-2020) State Key Laboratory of Infection Disease Prevention and Control, Chinese Center for Disease Control and Prevention, 155 Changbai Road, Beijing, Beijing 102206, China
Submitted (24-SEP-2019) State Key Laboratory of Infection Disease Prevention and Control, Chinese Center for Disease Control and Prevention, 155 Changbai Road, Beijing, Beijing 102206, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP059857.1.\nBacteria and source DNA available from human faeces.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 589.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/06/2022 13:53:38\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,264\nCDSs (total) :: 4,175\nGenes (coding) :: 4,089\nCDSs (with protein) :: 4,089\nGenes (RNA) :: 89\nrRNAs :: 6, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 5, 5 (5S, 16S, 23S)\ntRNAs :: 71\nncRNAs :: 2\nPseudo Genes (total) :: 86\nCDSs (without protein) :: 86\nPseudo Genes (ambiguous residues) :: 0 of 86\nPseudo Genes (frameshifted) :: 36 of 86\nPseudo Genes (incomplete) :: 52 of 86\nPseudo Genes (internal stop) :: 11 of 86\nPseudo Genes (multiple problems) :: 12 of 86\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Bacteroides zhangwenhongi
COORDINATES: similar to AA sequence:RefSeq:WP_008777460.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005648607.1
COORDINATES: similar to AA sequence:RefSeq:WP_007659518.1
COORDINATES: similar to AA sequence:RefSeq:WP_007851284.1
COORDINATES: similar to AA sequence:RefSeq:WP_009276883.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611159.1
IS1380-like element IS613 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_008777463.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013611928.1
COORDINATES: similar to AA sequence:RefSeq:WP_010185730.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009274828.1
COORDINATES: similar to AA sequence:RefSeq:WP_008781167.1
type II toxin-antitoxin system HipA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_005868815.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005868817.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007569216.1
COORDINATES: similar to AA sequence:RefSeq:WP_008781165.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868823.1
COORDINATES: similar to AA sequence:RefSeq:WP_008781163.1
COORDINATES: similar to AA sequence:RefSeq:WP_009276868.1
COORDINATES: similar to AA sequence:RefSeq:WP_007219074.1
COORDINATES: similar to AA sequence:RefSeq:WP_004312010.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_008771414.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868870.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007564705.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_008781157.1
COORDINATES: similar to AA sequence:RefSeq:WP_007844587.1
COORDINATES: similar to AA sequence:RefSeq:WP_009276853.1
COORDINATES: similar to AA sequence:RefSeq:WP_007844590.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007844591.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868879.1
COORDINATES: similar to AA sequence:RefSeq:WP_009276850.1
COORDINATES: similar to AA sequence:RefSeq:WP_009276849.1
COORDINATES: similar to AA sequence:RefSeq:WP_009276848.1
COORDINATES: protein motif:HMM:TIGR03783.1
GO:0032991 - protein-containing complex [Evidence IEA]
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0032196 - transposition [Evidence IEA]
TraG family conjugative transposon ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_008771420.1
COORDINATES: similar to AA sequence:RefSeq:WP_008771421.1
COORDINATES: similar to AA sequence:RefSeq:WP_008771423.1
COORDINATES: similar to AA sequence:RefSeq:WP_008771424.1
COORDINATES: similar to AA sequence:RefSeq:WP_009276841.1
COORDINATES: similar to AA sequence:RefSeq:WP_009276840.1
COORDINATES: similar to AA sequence:RefSeq:WP_008771426.1
COORDINATES: similar to AA sequence:RefSeq:WP_008771427.1
COORDINATES: similar to AA sequence:RefSeq:WP_007844614.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005868902.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007844616.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008781143.1
COORDINATES: similar to AA sequence:RefSeq:WP_008771433.1
COORDINATES: similar to AA sequence:RefSeq:WP_007844621.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868910.1
COORDINATES: similar to AA sequence:RefSeq:WP_007844626.1
COORDINATES: similar to AA sequence:RefSeq:WP_008781195.1
COORDINATES: similar to AA sequence:RefSeq:WP_007564676.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868748.1
COORDINATES: similar to AA sequence:RefSeq:WP_008771460.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868750.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868751.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868753.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868755.1
COORDINATES: similar to AA sequence:RefSeq:WP_007564662.1
COORDINATES: similar to AA sequence:RefSeq:WP_007568430.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008771441.1
COORDINATES: similar to AA sequence:RefSeq:WP_008781197.1
COORDINATES: similar to AA sequence:RefSeq:WP_008771437.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868761.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868762.1
COORDINATES: similar to AA sequence:RefSeq:WP_007844644.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008771447.1
COORDINATES: similar to AA sequence:RefSeq:WP_008771448.1
COORDINATES: similar to AA sequence:RefSeq:WP_009276895.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868769.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868770.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868772.1
COORDINATES: similar to AA sequence:RefSeq:WP_007844651.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868776.1
COORDINATES: similar to AA sequence:RefSeq:WP_005799262.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008771457.1
COORDINATES: similar to AA sequence:RefSeq:WP_008781192.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868780.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868781.1
COORDINATES: similar to AA sequence:RefSeq:WP_008770288.1
COORDINATES: similar to AA sequence:RefSeq:WP_007844659.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868785.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868786.1
COORDINATES: similar to AA sequence:RefSeq:WP_008770285.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005868789.1
MobC family plasmid mobilization relaxosome protein
COORDINATES: similar to AA sequence:RefSeq:WP_005868790.1
COORDINATES: similar to AA sequence:RefSeq:WP_004329304.1
COORDINATES: similar to AA sequence:RefSeq:WP_005775886.1
COORDINATES: similar to AA sequence:RefSeq:WP_004329302.1
COORDINATES: similar to AA sequence:RefSeq:WP_004329300.1
COORDINATES: similar to AA sequence:RefSeq:WP_004329299.1
COORDINATES: similar to AA sequence:RefSeq:WP_004329298.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868794.1
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_007659510.1
COORDINATES: similar to AA sequence:RefSeq:WP_008777459.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868799.1