Acholeplasma hippikon strain NCTC10172 chromosome 1, ribosomal protein l10 leader region.
Bacteria; Mycoplasmatota; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Acholeplasma.
Submitted (24-JAN-2019) WTSI, Pathogen Informatics, Wellcome Trust Sanger Institute, CB10 1SA, United Kingdom
REFSEQ INFORMATION: The reference sequence is identical to\nLR215050.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/27/2022 01:22:54\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,426\nCDSs (total) :: 1,377\nGenes (coding) :: 1,373\nCDSs (with protein) :: 1,373\nGenes (RNA) :: 49\nrRNAs :: 4, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 3, 3 (5S, 16S, 23S)\ntRNAs :: 36\nncRNAs :: 3\nPseudo Genes (total) :: 4\nCDSs (without protein) :: 4\nPseudo Genes (ambiguous residues) :: 0 of 4\nPseudo Genes (frameshifted) :: 1 of 4\nPseudo Genes (incomplete) :: 3 of 4\nPseudo Genes (internal stop) :: 0 of 4\n##Genome-Annotation-Data-END##
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012242940.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012242939.1
GO:0045148 - tripeptide aminopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021388.2
COORDINATES: protein motif:HMM:NF012869.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242934.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242933.1
COORDINATES: protein motif:HMM:NF039907.1
COORDINATES: protein motif:HMM:NF019194.2
COORDINATES: protein motif:HMM:NF013647.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242918.1
COORDINATES: protein motif:HMM:NF014092.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242914.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242913.1
COORDINATES: protein motif:HMM:TIGR00309.1
GO:0016471 - vacuolar proton-transporting V-type ATPase complex [Evidence IEA]
GO:0008553 - P-type proton-exporting transporter activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF01734
Fluoride riboswitches increase expression of downstream genes that help mitigate the toxic effects of very high levels of fluoride; They are found in a wide variety of bacteria and archaea; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_012242855.1
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF014325.2
COORDINATES: protein motif:HMM:NF014443.2
COORDINATES: protein motif:HMM:NF012402.2
2Fe-2S iron-sulfur cluster binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012242910.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242909.1
COORDINATES: protein motif:HMM:NF016121.2
COORDINATES: protein motif:HMM:NF015100.2
RnfABCDGE type electron transport complex subunit D
COORDINATES: protein motif:HMM:TIGR00400.1
GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IEA]
GO:0015693 - magnesium ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013895.2
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242904.1
GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
decarboxylating 6-phosphogluconate dehydrogenase
COORDINATES: protein motif:HMM:TIGR00871.1
GO:0004345 - glucose-6-phosphate dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014165.2
COORDINATES: protein motif:HMM:TIGR01179.1
GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IEA]
GO:0006012 - galactose metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00479.1
GO:0008649 - rRNA methyltransferase activity [Evidence IEA]
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
COORDINATES: protein motif:HMM:NF033516.0
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024908.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012955.2
COORDINATES: protein motif:HMM:NF015925.2
COORDINATES: protein motif:HMM:NF013219.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
iron chelate uptake ABC transporter family permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012242897.1
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF013648.2
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF015779.2
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
GO:0043952 - protein transport by the Sec complex [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00046.1
COORDINATES: similar to AA sequence:RefSeq:WP_011160972.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242892.1
COORDINATES: protein motif:HMM:TIGR00043.2
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004540 - ribonuclease activity [Evidence IEA]
GO:0042254 - ribosome biogenesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242890.1
GO:0004126 - cytidine deaminase activity [Evidence IEA]
GO:0008655 - pyrimidine-containing compound salvage [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00436.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00613.1
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242887.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004820 - glycine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006426 - glycyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01391.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016176834.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016689.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242883.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: protein motif:HMM:NF015321.2
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242576.1
COORDINATES: protein motif:HMM:NF021218.2
COORDINATES: protein motif:HMM:NF019542.2
COORDINATES: protein motif:HMM:NF024098.2
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: protein motif:HMM:NF018663.2
COORDINATES: protein motif:HMM:NF012514.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012621.2
COORDINATES: protein motif:HMM:NF012521.2
COORDINATES: protein motif:HMM:NF013989.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242694.1
COORDINATES: protein motif:HMM:NF013080.2
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012243342.1
COORDINATES: protein motif:HMM:NF014717.2
COORDINATES: similar to AA sequence:RefSeq:WP_012243340.1
COORDINATES: protein motif:HMM:NF012301.2
LytTR family DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF025854.2
COORDINATES: protein motif:HMM:NF024637.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242340.1
BMP family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_016289947.1
COORDINATES: protein motif:HMM:NF014684.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242342.1
COORDINATES: protein motif:HMM:NF015325.2
COORDINATES: similar to AA sequence:RefSeq:WP_012243166.1
COORDINATES: protein motif:HMM:NF017946.2
COORDINATES: protein motif:HMM:NF024812.2
COORDINATES: protein motif:HMM:NF013652.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242366.1
COORDINATES: protein motif:HMM:NF020438.2
COORDINATES: protein motif:HMM:NF015683.2
glutathionylspermidine synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012242235.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012371.2
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008680044.1
COORDINATES: protein motif:HMM:NF012579.2
COORDINATES: similar to AA sequence:RefSeq:WP_012358755.1
COORDINATES: protein motif:HMM:NF039513.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242386.1
COORDINATES: protein motif:HMM:NF024573.2
SbcC/MukB-like Walker B domain-containing protein
COORDINATES: protein motif:HMM:TIGR01417.1
GO:0008965 - phosphoenolpyruvate-protein phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]; GO:0006808 - regulation of nitrogen utilization [Evidence IEA]
phosphoenolpyruvate--protein phosphotransferase
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:TIGR00497.1
GO:0015666 - restriction endodeoxyribonuclease activity [Evidence IEA]; GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]; GO:0009307 - DNA restriction-modification system [Evidence IEA]
type I restriction-modification system subunit M
COORDINATES: protein motif:HMM:NF013579.2
COORDINATES: protein motif:HMM:TIGR00348.1
GO:0019812 - type I site-specific deoxyribonuclease complex [Evidence IEA]
GO:0009035 - type I site-specific deoxyribonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
HsdR family type I site-specific deoxyribonuclease
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: protein motif:HMM:NF013996.2
GO:0005506 - iron ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024952.2
COORDINATES: protein motif:HMM:NF024252.2
COORDINATES: protein motif:HMM:NF024698.2
COORDINATES: protein motif:HMM:NF022137.2
class I SAM-dependent rRNA methyltransferase
COORDINATES: protein motif:HMM:NF033788.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_007209263.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00254.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242702.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012242701.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012790.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242699.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF012398.2
COORDINATES: similar to AA sequence:RefSeq:WP_005902726.1
GO:0000036 - acyl carrier activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012584.2
acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012242408.1
GO:0009317 - acetyl-CoA carboxylase complex [Evidence IEA]
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]; GO:0004075 - biotin carboxylase activity [Evidence IEA]
acetyl-CoA carboxylase biotin carboxylase subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012242409.1
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]
acetyl-CoA carboxylase, carboxyltransferase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_012242410.1
acetyl-CoA carboxylase carboxyltransferase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_012242411.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242687.1
GO:0018580 - nitronate monooxygenase activity [Evidence IEA]
enoyl-[acyl-carrier-protein] reductase FabK
COORDINATES: protein motif:HMM:NF012901.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242413.1
GO:0004316 - 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity [Evidence IEA]
3-oxoacyl-[acyl-carrier-protein] reductase
COORDINATES: similar to AA sequence:RefSeq:WP_012242414.1
GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242415.1
COORDINATES: protein motif:HMM:TIGR00121.1
GO:0004077 - biotin-[acetyl-CoA-carboxylase] ligase activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014669.2
GO:0015225 - biotin transmembrane transporter activity [Evidence IEA]
GO:0015878 - biotin transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF019604.2
COORDINATES: similar to AA sequence:RefSeq:WP_012243257.1
GO:0004018 - N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011412379.1
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242423.1
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: protein motif:HMM:NF013216.2
transcription antitermination factor NusB
COORDINATES: protein motif:HMM:TIGR00237.1
GO:0009318 - exodeoxyribonuclease VII complex [Evidence IEA]
GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
GO:0006308 - DNA catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242427.1
COORDINATES: protein motif:HMM:TIGR00478.1
COORDINATES: protein motif:HMM:TIGR00634.1
COORDINATES: protein motif:HMM:NF002677.0
GO:0003684 - damaged DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012492.2
COORDINATES: similar to AA sequence:RefSeq:WP_011160805.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF027552.2
COORDINATES: protein motif:HMM:NF012692.2
COORDINATES: protein motif:HMM:NF019322.2
COORDINATES: protein motif:HMM:NF021507.2
phosphodiester glycosidase family protein
COORDINATES: protein motif:HMM:NF012931.2
COORDINATES: protein motif:HMM:NF013697.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242228.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242229.1
COORDINATES: protein motif:HMM:NF013595.2
COORDINATES: protein motif:HMM:NF016764.2
COORDINATES: protein motif:HMM:NF039504.1
COORDINATES: protein motif:HMM:NF024863.2
GDSL-type esterase/lipase family protein
COORDINATES: protein motif:HMM:NF024941.2
COORDINATES: protein motif:HMM:NF013866.2
COORDINATES: protein motif:HMM:NF024240.2
COORDINATES: protein motif:HMM:NF002231.0
N-acetylmannosamine-6-phosphate 2-epimerase
COORDINATES: similar to AA sequence:RefSeq:WP_012359012.1
GO:0004814 - arginine-tRNA ligase activity [Evidence IEA]
GO:0006420 - arginyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00374.1
lysylphosphatidylglycerol synthase transmembrane domain-containing protein
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: similar to AA sequence:RefSeq:WP_004182348.1
COORDINATES: protein motif:HMM:NF024091.2
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF024760.2
GO:0070007 - glutamic-type endopeptidase activity [Evidence IEA]
PrsW family glutamic-type intramembrane protease
COORDINATES: protein motif:HMM:NF019928.2
COORDINATES: similar to AA sequence:RefSeq:WP_008863800.1
COORDINATES: protein motif:HMM:NF024699.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242441.1
GO:0004516 - nicotinate phosphoribosyltransferase activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00797.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242443.1
tRNA (cytidine(34)-2'-O)-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011160533.1
COORDINATES: similar to AA sequence:RefSeq:WP_017192088.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242452.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242458.1
COORDINATES: protein motif:HMM:TIGR00367.1
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF033542.1
COORDINATES: protein motif:HMM:NF013053.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242076.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242461.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242462.1
COORDINATES: protein motif:HMM:NF024852.2
COORDINATES: similar to AA sequence:RefSeq:WP_012243178.1
COORDINATES: similar to AA sequence:RefSeq:WP_004995093.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024854.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012243168.1
COORDINATES: similar to AA sequence:RefSeq:WP_012243167.1
COORDINATES: protein motif:HMM:NF015820.2
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: protein motif:HMM:NF013488.2
COORDINATES: protein motif:HMM:NF025054.2
COORDINATES: protein motif:HMM:NF038065.1
COORDINATES: protein motif:HMM:TIGR02734.1
GO:0016166 - phytoene dehydrogenase activity [Evidence IEA]
GO:0016117 - carotenoid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012705.2
phytoene/squalene synthase family protein
COORDINATES: protein motif:HMM:NF014049.2
COORDINATES: protein motif:HMM:NF020397.2
COORDINATES: protein motif:HMM:NF018644.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
prolyl oligopeptidase family serine peptidase
COORDINATES: protein motif:HMM:NF021471.2
COORDINATES: protein motif:HMM:NF014135.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242477.1
glycogen/starch/alpha-glucan phosphorylase
COORDINATES: similar to AA sequence:RefSeq:WP_012242478.1
GO:0003844 - 1,4-alpha-glucan branching enzyme activity [Evidence IEA]; GO:0043169 - cation binding [Evidence IEA]; GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO:0005978 - glycogen biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012742.2
LacI family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:NF012356.2
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF007251.0
GO:0019200 - carbohydrate kinase activity [Evidence IEA]
GO:0019316 - D-allose catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: protein motif:HMM:TIGR01297.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]; GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00115.1
GO:0005854 - nascent polypeptide-associated complex [Evidence IEA]
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0051083 - 'de novo' cotranslational protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242485.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03598.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
ribosome biogenesis GTP-binding protein YihA/YsxC
COORDINATES: protein motif:HMM:NF014679.2
COORDINATES: protein motif:HMM:NF000824.0
GO:0004459 - L-lactate dehydrogenase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00230
T-box leader; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_012242490.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004832 - valine-tRNA ligase activity [Evidence IEA]
GO:0006438 - valyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01499.1
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF023568.2
COORDINATES: protein motif:HMM:TIGR00023.1
GO:0008374 - O-acyltransferase activity [Evidence IEA]
GO:0006654 - phosphatidic acid biosynthetic process [Evidence IEA]
glycerol-3-phosphate 1-O-acyltransferase PlsY
COORDINATES: protein motif:HMM:TIGR00331.1
GO:0009408 - response to heat [Evidence IEA]
heat-inducible transcriptional repressor HrcA
COORDINATES: protein motif:HMM:NF010738.0
GO:0000774 - adenyl-nucleotide exchange factor activity [Evidence IEA]; GO:0051087 - chaperone binding [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017192198.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242500.1
GO:0005515 - protein binding [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]; GO:0009408 - response to heat [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015637853.1
GO:0017118 - lipoyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242503.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000315 - organellar large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242504.1
GO:0016434 - rRNA (cytosine) methyltransferase activity [Evidence IEA]
16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
COORDINATES: protein motif:HMM:NF013702.2
lysophospholipid acyltransferase family protein
COORDINATES: protein motif:HMM:TIGR00482.1
GO:0000309 - nicotinamide-nucleotide adenylyltransferase activity [Evidence IEA]; GO:0004515 - nicotinate-nucleotide adenylyltransferase activity [Evidence IEA]
nicotinate (nicotinamide) nucleotide adenylyltransferase
COORDINATES: protein motif:HMM:NF002730.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0004359 - glutaminase activity [Evidence IEA]; GO:0003952 - NAD+ synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]; GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242508.1
GO:0016783 - sulfurtransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01448.1
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014305.2
COORDINATES: protein motif:HMM:NF012998.2
prephenate dehydratase domain-containing protein
COORDINATES: protein motif:HMM:NF013098.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242513.1
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012243189.1
COORDINATES: similar to AA sequence:RefSeq:WP_012243188.1
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242689.1
COORDINATES: protein motif:HMM:NF014647.2
COORDINATES: protein motif:HMM:TIGR00112.1
GO:0004735 - pyrroline-5-carboxylate reductase activity [Evidence IEA]
GO:0006561 - proline biosynthetic process [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00168
Lysine riboswitch is most abundant in Firmicutes and Gammaproteobacteria where they are found upstream of a number of genes involved in lysine biosynthesis, transport and catabolism; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF012707.2
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003716979.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_005380196.1
amino acid ABC transporter substrate-binding protein
sensor domain-containing diguanylate cyclase
COORDINATES: protein motif:HMM:NF021075.2
COORDINATES: protein motif:HMM:NF015573.2
COORDINATES: protein motif:HMM:NF019474.2
COORDINATES: protein motif:HMM:TIGR00005.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611387.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012242594.1
GO:0009982 - pseudouridine synthase activity [Evidence IEA]
GO:0001522 - pseudouridine synthesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242595.1
COORDINATES: protein motif:HMM:NF013397.2
formate/nitrite transporter family protein
COORDINATES: protein motif:HMM:NF019559.2
COORDINATES: similar to AA sequence:RefSeq:WP_000913315.1
GO:0033743 - peptide-methionine (R)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (R)-S-oxide reductase MsrB
COORDINATES: similar to AA sequence:RefSeq:WP_012242602.1
GO:0004134 - 4-alpha-glucanotransferase activity [Evidence IEA]
GO:0005980 - glycogen catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02104.1
GO:0051060 - pullulanase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019292901.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: protein motif:HMM:NF013741.2
COORDINATES: protein motif:HMM:TIGR02095.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242468.1
GO:0008878 - glucose-1-phosphate adenylyltransferase activity [Evidence IEA]
GO:0005978 - glycogen biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017193407.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00539.1
GO:0051989 - coproporphyrinogen dehydrogenase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242626.1
GO:0009009 - site-specific recombinase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242627.1
GO:0008973 - phosphopentomutase activity [Evidence IEA]
GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012913.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242628.1
COORDINATES: protein motif:HMM:TIGR00095.1
GO:0052913 - 16S rRNA (guanine(966)-N(2))-methyltransferase activity [Evidence IEA]
GO:0031167 - rRNA methylation [Evidence IEA]
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD
COORDINATES: similar to AA sequence:RefSeq:WP_012242630.1
GO:0016154 - pyrimidine-nucleoside phosphorylase activity [Evidence IEA]
GO:0006213 - pyrimidine nucleoside metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024754.2
COORDINATES: protein motif:HMM:NF024117.2
COORDINATES: similar to AA sequence:RefSeq:WP_017193289.1
GO:0004146 - dihydrofolate reductase activity [Evidence IEA]
GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011412711.1
GO:0004799 - thymidylate synthase activity [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF005591.0
GO:0016805 - dipeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00621.2
COORDINATES: protein motif:HMM:NF017044.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242645.1
GO:0004731 - purine-nucleoside phosphorylase activity [Evidence IEA]
GO:0043096 - purine nucleobase salvage [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242646.1
GO:0004139 - deoxyribose-phosphate aldolase activity [Evidence IEA]
GO:0009264 - deoxyribonucleotide catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00087.1
GO:0008254 - 3'-nucleotidase activity [Evidence IEA]; GO:0008253 - 5'-nucleotidase activity [Evidence IEA]
GO:0006950 - response to stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242649.1
GO:0004822 - isoleucine-tRNA ligase activity [Evidence IEA]
GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF016363.2
COORDINATES: protein motif:HMM:TIGR00044.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
YggS family pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_019469841.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242653.1
GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242654.1
GO:0008479 - queuine tRNA-ribosyltransferase activity [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
COORDINATES: protein motif:HMM:NF017941.2
COORDINATES: protein motif:HMM:TIGR01084.1
GO:0004844 - uracil DNA N-glycosylase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF013077.2
COORDINATES: protein motif:HMM:NF014036.2
ABC transporter ATP-binding protein/permease
COORDINATES: protein motif:HMM:NF024811.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242680.1
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024242.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242355.1
GO:0008929 - methylglyoxal synthase activity [Evidence IEA]
GO:0019242 - methylglyoxal biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013413.2
GO:0070573 - metallodipeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025895.2
COORDINATES: protein motif:HMM:NF012593.2
dicarboxylate/amino acid:cation symporter
COORDINATES: protein motif:HMM:NF021483.2
COORDINATES: protein motif:HMM:NF024875.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014373.2
COORDINATES: protein motif:HMM:NF013188.2
COORDINATES: protein motif:HMM:NF027483.2
COORDINATES: protein motif:HMM:NF024898.2
COORDINATES: protein motif:HMM:NF027718.2
COORDINATES: protein motif:HMM:NF020522.2
COORDINATES: protein motif:HMM:NF015971.2
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: protein motif:HMM:NF024743.2
DUF4097 family beta strand repeat-containing protein
COORDINATES: protein motif:HMM:NF019618.2
COORDINATES: similar to AA sequence:RefSeq:WP_012243304.1
COORDINATES: protein motif:HMM:NF016854.2
COORDINATES: protein motif:HMM:NF024487.2
COORDINATES: protein motif:HMM:NF024742.2
GO:0015486 - glycoside-pentoside-hexuronide:cation symporter activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0006812 - monoatomic cation transport [Evidence IEA]
glycoside-pentoside-hexuronide (GPH):cation symporter
COORDINATES: protein motif:HMM:NF014026.2
glycoside hydrolase family 3 C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF019632.2
ClbS/DfsB family four-helix bundle protein
COORDINATES: protein motif:HMM:TIGR01990.1
GO:0008801 - beta-phosphoglucomutase activity [Evidence IEA]
GO:0046352 - disaccharide catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: protein motif:HMM:NF019846.2
COORDINATES: protein motif:HMM:NF013753.2
COORDINATES: protein motif:HMM:NF023806.2
COORDINATES: protein motif:HMM:NF015944.2
COORDINATES: protein motif:HMM:NF019021.2
COORDINATES: protein motif:HMM:NF017663.2
GO:0000287 - magnesium ion binding [Evidence IEA]
RusA family crossover junction endodeoxyribonuclease
COORDINATES: protein motif:HMM:NF012870.2
DDE-type integrase/transposase/recombinase
COORDINATES: protein motif:HMM:NF013828.2
COORDINATES: protein motif:HMM:NF024642.2
COORDINATES: protein motif:HMM:NF024700.2
COORDINATES: protein motif:HMM:NF037892.2
type I restriction endonuclease subunit R
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: nucleotide motif:Rfam:14.4:RF00023
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF024231.2
COORDINATES: protein motif:HMM:TIGR01891.1
COORDINATES: protein motif:HMM:NF012376.2
GO:0009166 - nucleotide catabolic process [Evidence IEA]
5'-nucleotidase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012242739.1
GO:0003920 - GMP reductase activity [Evidence IEA]
GO:0015950 - purine nucleotide interconversion [Evidence IEA]
COORDINATES: protein motif:HMM:NF013782.2
GO:0016790 - thiolester hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025063.2
COORDINATES: protein motif:HMM:TIGR02151.1
GO:0004452 - isopentenyl-diphosphate delta-isomerase activity [Evidence IEA]
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
type 2 isopentenyl-diphosphate Delta-isomerase
COORDINATES: protein motif:HMM:TIGR01220.1
GO:0004631 - phosphomevalonate kinase activity [Evidence IEA]
GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway [Evidence IEA]; GO:0016126 - sterol biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01240.1
GO:0004163 - diphosphomevalonate decarboxylase activity [Evidence IEA]
GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242746.1
GO:0004496 - mevalonate kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242747.1
COORDINATES: protein motif:HMM:NF012515.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242748.1
COORDINATES: protein motif:HMM:NF012905.2
COORDINATES: nucleotide motif:Rfam:14.4:RF00011
COORDINATES: similar to AA sequence:RefSeq:WP_012242753.1
GO:0004654 - polyribonucleotide nucleotidyltransferase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO:0006402 - mRNA catabolic process [Evidence IEA]; GO:0006396 - RNA processing [Evidence IEA]
polyribonucleotide nucleotidyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_004933502.1
COORDINATES: similar to AA sequence:RefSeq:WP_017192524.1
COORDINATES: protein motif:HMM:NF004162.0
GO:0003919 - FMN adenylyltransferase activity [Evidence IEA]
bifunctional riboflavin kinase/FAD synthetase
COORDINATES: similar to AA sequence:RefSeq:WP_011412764.1
GO:0004730 - pseudouridylate synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242758.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01069.1
GO:0030983 - mismatched DNA binding [Evidence IEA]
GO:0006259 - DNA metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242760.1
GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]
GO:0006401 - RNA catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242762.1
COORDINATES: protein motif:HMM:TIGR00077.1
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: protein motif:HMM:NF017200.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242766.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242767.1
GO:0033744 - L-methionine:thioredoxin-disulfide S-oxidoreductase activity [Evidence IEA]; GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
peptide-methionine (S)-S-oxide reductase MsrA
COORDINATES: similar to AA sequence:RefSeq:WP_012242768.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00442.1
GO:0004821 - histidine-tRNA ligase activity [Evidence IEA]
GO:0006427 - histidyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013740.2
COORDINATES: protein motif:HMM:NF014621.2
GO:0004045 - aminoacyl-tRNA hydrolase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242773.1
bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_002295813.1
GO:0003999 - adenine phosphoribosyltransferase activity [Evidence IEA]
GO:0006168 - adenine salvage [Evidence IEA]; GO:0009116 - nucleoside metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF023428.2
replication-associated recombination protein A
COORDINATES: protein motif:HMM:NF012927.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242777.1
COORDINATES: similar to AA sequence:RefSeq:WP_012504361.1
GO:0004518 - nuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF021062.2
GO:0015234 - thiamine transmembrane transporter activity [Evidence IEA]
GO:0015888 - thiamine transport [Evidence IEA]
energy-coupled thiamine transporter ThiT
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF014062.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242782.1
COORDINATES: similar to AA sequence:RefSeq:WP_017191895.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242784.1
UTP--glucose-1-phosphate uridylyltransferase
COORDINATES: protein motif:HMM:NF011109.0
GO:0019843 - rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001830767.1
COORDINATES: protein motif:HMM:TIGR00168.2
GO:0003743 - translation initiation factor activity [Evidence IEA]
GO:0006413 - translational initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242789.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242790.1
COORDINATES: protein motif:HMM:NF012766.2
COORDINATES: protein motif:HMM:NF014877.2
COORDINATES: protein motif:HMM:TIGR00671.1
GO:0004594 - pantothenate kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001265708.1
ABC-F family ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018764411.1
GO:0015267 - channel activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015534.2
Type 1 glutamine amidotransferase-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012242808.1
COORDINATES: protein motif:HMM:NF013775.2
COORDINATES: protein motif:HMM:NF024258.2
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00042.1
GO:0016462 - pyrophosphatase activity [Evidence IEA]
RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
COORDINATES: protein motif:HMM:NF014566.2
CPBP family intramembrane metalloprotease
COORDINATES: protein motif:HMM:NF024206.2
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015900354.1
COORDINATES: similar to AA sequence:RefSeq:WP_011412760.1
NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_012242818.1
COORDINATES: protein motif:HMM:NF012784.2
GO:0003676 - nucleic acid binding [Evidence IEA]
S1 RNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012242820.1
GO:0004127 - cytidylate kinase activity [Evidence IEA]
GO:0015949 - nucleobase-containing small molecule interconversion [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00093.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242822.1
GO:0003746 - translation elongation factor activity [Evidence IEA]
GO:0006414 - translational elongation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242823.1
COORDINATES: protein motif:HMM:NF013375.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242825.1
GO:0052381 - tRNA dimethylallyltransferase activity [Evidence IEA]
tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA
COORDINATES: protein motif:HMM:TIGR00585.2
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0006298 - mismatch repair [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01070.1
COORDINATES: similar to AA sequence:RefSeq:WP_017192693.1
GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242830.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
GO:0006402 - mRNA catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242832.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242833.1
COORDINATES: similar to AA sequence:RefSeq:WP_004994777.1
GO:0008094 - ATP-dependent activity, acting on DNA [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00560.1
GO:0008444 - CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity [Evidence IEA]
GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011160456.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000312 - plastid small ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:NF013122.2
COORDINATES: protein motif:HMM:TIGR01128.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF024245.2
COORDINATES: protein motif:HMM:NF013382.2
COORDINATES: protein motif:HMM:TIGR00090.1
GO:0043022 - ribosome binding [Evidence IEA]
GO:0017148 - negative regulation of translation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00488.1
bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK
COORDINATES: protein motif:HMM:TIGR01668.1
GO:0008962 - phosphatidylglycerophosphatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012504395.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0070063 - RNA polymerase binding [Evidence IEA]
GO:0032784 - regulation of DNA-templated transcription elongation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013980.2
COORDINATES: protein motif:HMM:NF013742.2
COORDINATES: protein motif:HMM:NF018633.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242849.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242850.1
GO:0004813 - alanine-tRNA ligase activity [Evidence IEA]
GO:0006419 - alanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013718.2
COORDINATES: protein motif:HMM:NF013862.2
patatin-like phospholipase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012242358.1
COORDINATES: protein motif:HMM:TIGR00358.1
GO:0008997 - ribonuclease R activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016972.2
COORDINATES: similar to AA sequence:RefSeq:WP_017466665.1
GO:0004634 - phosphopyruvate hydratase activity [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00050
FMN riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_011412717.1
GO:0046537 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity [Evidence IEA]
2,3-bisphosphoglycerate-independent phosphoglycerate mutase
COORDINATES: protein motif:HMM:NF001567.0
GO:0004047 - aminomethyltransferase activity [Evidence IEA]
GO:0019464 - glycine decarboxylation via glycine cleavage system [Evidence IEA]
glycine cleavage system aminomethyltransferase GcvT
COORDINATES: similar to AA sequence:RefSeq:WP_012242349.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242348.1
GO:0004375 - glycine dehydrogenase (decarboxylating) activity [Evidence IEA]
GO:0006546 - glycine catabolic process [Evidence IEA]
aminomethyl-transferring glycine dehydrogenase subunit GcvPA
COORDINATES: similar to AA sequence:RefSeq:WP_012242347.1
aminomethyl-transferring glycine dehydrogenase subunit GcvPB
COORDINATES: protein motif:HMM:NF013530.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF012697.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242333.1
GO:0009340 - DNA topoisomerase IV complex [Evidence IEA]
GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242332.1
COORDINATES: protein motif:HMM:NF012472.2
COORDINATES: protein motif:HMM:NF017181.2
COORDINATES: protein motif:HMM:TIGR00091.1
GO:0008176 - tRNA (guanine-N7-)-methyltransferase activity [Evidence IEA]
tRNA (guanosine(46)-N7)-methyltransferase TrmB
COORDINATES: protein motif:HMM:NF015951.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242327.1
GO:0008982 - protein-N(PI)-phosphohistidine-sugar phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
COORDINATES: protein motif:HMM:NF014703.2
COORDINATES: protein motif:HMM:NF001140.0
GO:0016853 - isomerase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
COORDINATES: similar to AA sequence:RefSeq:WP_012242323.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0009378 - four-way junction helicase activity [Evidence IEA]
Holliday junction branch migration DNA helicase RuvB
COORDINATES: protein motif:HMM:TIGR00084.1
GO:0009379 - Holliday junction helicase complex [Evidence IEA]
GO:0009378 - four-way junction helicase activity [Evidence IEA]
Holliday junction branch migration protein RuvA
COORDINATES: similar to AA sequence:RefSeq:WP_012242318.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242317.1
COORDINATES: similar to AA sequence:RefSeq:WP_012359065.1
ribosomal-processing cysteine protease Prp
COORDINATES: similar to AA sequence:RefSeq:WP_012242315.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000311 - plastid large ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:NF016983.2
COORDINATES: protein motif:HMM:TIGR00608.1
COORDINATES: protein motif:HMM:NF039407.1
COORDINATES: protein motif:HMM:NF022077.2
COORDINATES: protein motif:HMM:NF024110.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242308.1
COORDINATES: similar to AA sequence:RefSeq:WP_017193127.1
GO:0004829 - threonine-tRNA ligase activity [Evidence IEA]
GO:0006435 - threonyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF018914.2
COORDINATES: protein motif:HMM:NF002211.1
GO:0008534 - oxidized purine nucleobase lesion DNA N-glycosylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF004397.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0006261 - DNA-templated DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242302.1
GO:0048501 - signal recognition particle, plasma membrane targeting [Evidence IEA]
GO:0003924 - GTPase activity [Evidence IEA]; GO:0005048 - signal sequence binding [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]
COORDINATES: protein motif:HMM:NF016205.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242300.1
GO:0003924 - GTPase activity [Evidence IEA]; GO:0005047 - signal recognition particle binding [Evidence IEA]
signal recognition particle-docking protein FtsY
COORDINATES: similar to AA sequence:RefSeq:WP_012242299.1
GO:0016684 - oxidoreductase activity, acting on peroxide as acceptor [Evidence IEA]; GO:0008379 - thioredoxin peroxidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013316.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242292.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242291.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242290.1
COORDINATES: protein motif:HMM:NF013727.2
COORDINATES: protein motif:HMM:TIGR00099.1
COORDINATES: protein motif:HMM:NF014668.2
GO:0006282 - regulation of DNA repair [Evidence IEA]
COORDINATES: protein motif:HMM:NF014627.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242284.1
GO:0003747 - translation release factor activity [Evidence IEA]
GO:0006415 - translational termination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242283.1
GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF022779.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242281.1
GO:0004478 - methionine adenosyltransferase activity [Evidence IEA]
GO:0006556 - S-adenosylmethionine biosynthetic process [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00162
SAM riboswitch class I; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF016489.2
GO:0006629 - lipid metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00460.1
GO:0004479 - methionyl-tRNA formyltransferase activity [Evidence IEA]
GO:0006431 - methionyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00595.1
GO:0005658 - alpha DNA polymerase:primase complex [Evidence IEA]
GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0003688 - DNA replication origin binding [Evidence IEA]; GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012359081.1
GO:0019843 - rRNA binding [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242273.1
COORDINATES: protein motif:HMM:NF013417.2
ribosomal L7Ae/L30e/S12e/Gadd45 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012242271.1
COORDINATES: protein motif:HMM:TIGR01953.1
GO:0006353 - DNA-templated transcription termination [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01510.1
GO:0004595 - pantetheine-phosphate adenylyltransferase activity [Evidence IEA]
GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]
pantetheine-phosphate adenylyltransferase
COORDINATES: protein motif:HMM:NF019887.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242262.1
COORDINATES: protein motif:HMM:NF016146.2
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013945.2
COORDINATES: similar to AA sequence:RefSeq:WP_012243247.1
GO:0003935 - GTP cyclohydrolase II activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010735800.1
COORDINATES: protein motif:HMM:NF022521.2
COORDINATES: protein motif:HMM:NF024673.2
COORDINATES: protein motif:HMM:NF018649.2
COORDINATES: protein motif:HMM:NF021462.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242714.1
COORDINATES: protein motif:HMM:NF024788.2
PLDc N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF021386.2
COORDINATES: protein motif:HMM:TIGR00221.1
GO:0008448 - N-acetylglucosamine-6-phosphate deacetylase activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]
N-acetylglucosamine-6-phosphate deacetylase
COORDINATES: protein motif:HMM:NF025422.2
COORDINATES: protein motif:HMM:NF024107.2
COORDINATES: protein motif:HMM:NF014691.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242445.1
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242455.1
acetyl-CoA hydrolase/transferase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012242454.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242453.1
COORDINATES: protein motif:HMM:NF024850.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242449.1
branched-chain amino acid ABC transporter permease
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:TIGR00194.1
GO:0009380 - excinuclease repair complex [Evidence IEA]
GO:0009381 - excinuclease ABC activity [Evidence IEA]
GO:0006289 - nucleotide-excision repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242258.1
GO:0000345 - cytosolic DNA-directed RNA polymerase complex [Evidence IEA]
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]
DNA-directed RNA polymerase subunit omega
COORDINATES: similar to AA sequence:RefSeq:WP_012242257.1
GO:0004385 - guanylate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017633.2
COORDINATES: similar to AA sequence:RefSeq:WP_013352894.1
COORDINATES: protein motif:HMM:NF013661.2
COORDINATES: protein motif:HMM:TIGR00741.1
GO:0022626 - cytosolic ribosome [Evidence IEA]; GO:0005840 - ribosome [Evidence IEA]
GO:0045182 - translation regulator activity [Evidence IEA]
GO:0009386 - translational attenuation [Evidence IEA]
ribosome-associated translation inhibitor RaiA
COORDINATES: similar to AA sequence:RefSeq:WP_012242251.1
COORDINATES: protein motif:HMM:NF013932.2
membrane protein insertion efficiency factor YidD
COORDINATES: protein motif:HMM:NF012958.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242249.1
GO:0004827 - proline-tRNA ligase activity [Evidence IEA]
GO:0006433 - prolyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024899.2
S1-like domain-containing RNA-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015900294.1
COORDINATES: protein motif:HMM:NF016338.2
COORDINATES: protein motif:HMM:NF017686.2
COORDINATES: protein motif:HMM:NF022019.2
COORDINATES: protein motif:HMM:NF014244.2
COORDINATES: protein motif:HMM:NF024835.2
COORDINATES: protein motif:HMM:NF024363.2
COORDINATES: protein motif:HMM:NF024758.2
COORDINATES: protein motif:HMM:NF014537.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
replication initiation factor domain-containing protein
COORDINATES: protein motif:HMM:NF024783.2
COORDINATES: similar to AA sequence:RefSeq:WP_012243045.1
COORDINATES: protein motif:HMM:NF015729.2
COORDINATES: protein motif:HMM:NF016141.2
GlsB/YeaQ/YmgE family stress response membrane protein
COORDINATES: protein motif:HMM:NF013180.2
COORDINATES: protein motif:HMM:NF015451.2
aminoacetone oxidase family FAD-binding enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_012243209.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242243.1
alpha/beta hydrolase fold domain-containing protein
COORDINATES: protein motif:HMM:NF015000.2
GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]
glycerophosphodiester phosphodiesterase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012242242.1
COORDINATES: protein motif:HMM:NF014573.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242239.1
GO:0004342 - glucosamine-6-phosphate deaminase activity [Evidence IEA]
GO:0006046 - N-acetylglucosamine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242237.1
GO:0016835 - carbon-oxygen lyase activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009254 - peptidoglycan turnover [Evidence IEA]
N-acetylmuramic acid 6-phosphate etherase
COORDINATES: protein motif:HMM:NF013986.2
BadF/BadG/BcrA/BcrD ATPase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012242234.1
COORDINATES: protein motif:HMM:NF016726.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242232.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242227.1
COORDINATES: protein motif:HMM:NF014675.2
COORDINATES: protein motif:HMM:NF023401.2
catalyzes the fromation of N-acetyl-D-glucosamine and N-acetyl-D-glucosamine-6-phosphate from diacetylchitobiose-6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012242219.1
GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
anhydro-N-acetylmuramic acid kinase AnmK
COORDINATES: protein motif:HMM:NF013539.2
MurR/RpiR family transcriptional regulator
COORDINATES: protein motif:HMM:NF014910.2
COORDINATES: protein motif:HMM:TIGR00720.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003941 - L-serine ammonia-lyase activity [Evidence IEA]
GO:0009063 - amino acid catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242373.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242213.1
COORDINATES: similar to AA sequence:RefSeq:WP_011160481.1
COORDINATES: protein motif:HMM:TIGR01378.1
GO:0004788 - thiamine diphosphokinase activity [Evidence IEA]
GO:0006772 - thiamine metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242210.1
GO:0004750 - D-ribulose-phosphate 3-epimerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011160557.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
ribosome small subunit-dependent GTPase A
COORDINATES: similar to AA sequence:RefSeq:WP_012242208.1
GO:0016433 - rRNA (adenine) methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
COORDINATES: protein motif:HMM:TIGR00472.1
GO:0009328 - phenylalanine-tRNA ligase complex [Evidence IEA]
GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA]
GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242206.1
phenylalanine--tRNA ligase subunit alpha
COORDINATES: protein motif:HMM:NF024221.2
COORDINATES: protein motif:HMM:NF001688.0
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018406.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242202.1
GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
This family includes YhcC from E. coli K-12, an uncharacterized radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF018645.2
COORDINATES: protein motif:HMM:NF015513.2
COORDINATES: protein motif:HMM:NF010378.0
GO:0004022 - alcohol dehydrogenase (NAD+) activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0006066 - alcohol metabolic process [Evidence IEA]; GO:0015976 - carbon utilization [Evidence IEA]
bifunctional acetaldehyde-CoA/alcohol dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_019235960.1
GO:0004823 - leucine-tRNA ligase activity [Evidence IEA]
GO:0006429 - leucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242198.1
COORDINATES: protein motif:HMM:NF015509.2
COORDINATES: protein motif:HMM:NF021778.2
beta-propeller fold lactonase family protein
COORDINATES: protein motif:HMM:NF013232.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242194.1
COORDINATES: protein motif:HMM:TIGR00594.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242192.1
GO:0009055 - electron transfer activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242190.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242187.1
GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017192874.1
GO:0004525 - ribonuclease III activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00182.1
GO:0043811 - phosphate:acyl-[acyl carrier protein] acyltransferase activity [Evidence IEA]
GO:0008610 - lipid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF016724.2
COORDINATES: protein motif:HMM:NF014116.2
GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
carbohydrate binding domain-containing protein
COORDINATES: protein motif:HMM:NF008183.0
COORDINATES: protein motif:HMM:NF021596.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242181.1
GO:0004421 - hydroxymethylglutaryl-CoA synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00532.1
GO:0004420 - hydroxymethylglutaryl-CoA reductase (NADPH) activity [Evidence IEA]
GO:0016054 - organic acid catabolic process [Evidence IEA]
hydroxymethylglutaryl-CoA reductase, degradative
COORDINATES: protein motif:HMM:NF023156.2
COORDINATES: protein motif:HMM:NF013432.2
COORDINATES: protein motif:HMM:NF020090.2
COORDINATES: protein motif:HMM:NF013939.2
COORDINATES: protein motif:HMM:NF012497.2
GO:0003866 - 3-phosphoshikimate 1-carboxyvinyltransferase activity [Evidence IEA]
GO:0009423 - chorismate biosynthetic process [Evidence IEA]
3-phosphoshikimate 1-carboxyvinyltransferase
COORDINATES: protein motif:HMM:TIGR01357.1
GO:0003856 - 3-dehydroquinate synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014234.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242172.1
GO:0003849 - 3-deoxy-7-phosphoheptulonate synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00220.1
GO:0008381 - mechanosensitive monoatomic ion channel activity [Evidence IEA]
large conductance mechanosensitive channel protein MscL
COORDINATES: similar to AA sequence:RefSeq:WP_006785401.1
GO:0008168 - methyltransferase activity [Evidence IEA]
GO:0006364 - rRNA processing [Evidence IEA]
23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH
COORDINATES: protein motif:HMM:NF024118.2
COORDINATES: similar to AA sequence:RefSeq:WP_000121211.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012242166.1
COORDINATES: protein motif:HMM:NF009814.0
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
GO:0001680 - tRNA 3'-terminal CCA addition [Evidence IEA]
COORDINATES: protein motif:HMM:NF013378.2
COORDINATES: protein motif:HMM:NF018335.2
COORDINATES: similar to AA sequence:RefSeq:WP_002883819.1
GO:0004845 - uracil phosphoribosyltransferase activity [Evidence IEA]
GO:0009116 - nucleoside metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242162.1
GO:0004751 - ribose-5-phosphate isomerase activity [Evidence IEA]
GO:0009052 - pentose-phosphate shunt, non-oxidative branch [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242161.1
GO:0006950 - response to stress [Evidence IEA]; GO:0006412 - translation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00536.1
GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0018364 - peptidyl-glutamine methylation [Evidence IEA]; GO:0006412 - translation [Evidence IEA]
peptide chain release factor N(5)-glutamine methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_012358747.1
GO:0016149 - translation release factor activity, codon specific [Evidence IEA]
COORDINATES: protein motif:HMM:NF012436.2
DNA starvation/stationary phase protection protein
COORDINATES: protein motif:HMM:TIGR00665.1
GO:0003678 - DNA helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF011110.0
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242152.1
COORDINATES: similar to AA sequence:RefSeq:WP_010717553.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242150.1
COORDINATES: protein motif:HMM:NF014517.2
trypsin-like peptidase domain-containing protein
COORDINATES: protein motif:HMM:TIGR00010.1
COORDINATES: similar to AA sequence:RefSeq:WP_001040566.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242144.1
COORDINATES: similar to AA sequence:RefSeq:WP_013054923.1
COORDINATES: similar to AA sequence:RefSeq:WP_011160636.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242129.1
DNA-directed RNA polymerase subunit beta'
COORDINATES: similar to AA sequence:RefSeq:WP_012504536.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]; GO:0032549 - ribonucleoside binding [Evidence IEA]
DNA-directed RNA polymerase subunit beta
COORDINATES: protein motif:HMM:NF017026.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242126.1
COORDINATES: protein motif:HMM:NF000955.1
GO:0015934 - large ribosomal subunit [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00557
ribosomal protein L10 leader region; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_012242124.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242123.1
COORDINATES: similar to AA sequence:RefSeq:WP_012243044.1
COORDINATES: similar to AA sequence:RefSeq:WP_011303841.1
transcription termination/antitermination protein NusG
COORDINATES: protein motif:HMM:NF012793.2
COORDINATES: protein motif:HMM:TIGR02937.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_012242103.1
GO:0008173 - RNA methyltransferase activity [Evidence IEA]
GO:0009451 - RNA modification [Evidence IEA]
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB
COORDINATES: protein motif:HMM:TIGR01494.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012843.2
ribonuclease III domain-containing protein
COORDINATES: protein motif:HMM:TIGR00435.1
GO:0004817 - cysteine-tRNA ligase activity [Evidence IEA]
GO:0006423 - cysteinyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF022525.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242096.1
GO:0009332 - glutamate-tRNA ligase complex [Evidence IEA]
GO:0004818 - glutamate-tRNA ligase activity [Evidence IEA]
GO:0006424 - glutamyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002942223.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242094.1
COORDINATES: protein motif:HMM:NF014599.2
GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0051262 - protein tetramerization [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01511.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242089.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004825 - methionine-tRNA ligase activity [Evidence IEA]; GO:0000049 - tRNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00096.1
GO:0008649 - rRNA methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0000451 - rRNA 2'-O-methylation [Evidence IEA]
16S rRNA (cytidine(1402)-2'-O)-methyltransferase
COORDINATES: protein motif:HMM:NF014442.2
COORDINATES: protein motif:HMM:NF024575.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242084.1
GO:0004798 - thymidylate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00071.1
COORDINATES: protein motif:HMM:NF014420.2
energy-coupling factor transporter transmembrane component T
COORDINATES: similar to AA sequence:RefSeq:WP_012242081.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
energy-coupling factor transporter ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_041639900.1
COORDINATES: protein motif:HMM:NF012314.2
COORDINATES: similar to AA sequence:RefSeq:WP_007085264.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0005762 - mitochondrial large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242071.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
DNA-directed RNA polymerase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_017192473.1
COORDINATES: similar to AA sequence:RefSeq:WP_010262446.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011160599.1
COORDINATES: similar to AA sequence:RefSeq:WP_003130554.1
COORDINATES: similar to AA sequence:RefSeq:WP_017191432.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242065.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019205 - nucleobase-containing compound kinase activity [Evidence IEA]; GO:0016776 - phosphotransferase activity, phosphate group as acceptor [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00967.1
COORDINATES: similar to AA sequence:RefSeq:WP_012359040.1
COORDINATES: similar to AA sequence:RefSeq:WP_011412783.1
COORDINATES: similar to AA sequence:RefSeq:WP_012504504.1
COORDINATES: similar to AA sequence:RefSeq:WP_012359043.1
COORDINATES: similar to AA sequence:RefSeq:WP_017722933.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009754342.1
COORDINATES: similar to AA sequence:RefSeq:WP_004924130.1
COORDINATES: similar to AA sequence:RefSeq:WP_001096198.1
COORDINATES: similar to AA sequence:RefSeq:WP_011412790.1
COORDINATES: similar to AA sequence:RefSeq:WP_007073026.1
COORDINATES: similar to AA sequence:RefSeq:WP_011160584.1
COORDINATES: similar to AA sequence:RefSeq:WP_002288664.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242051.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242050.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242049.1
COORDINATES: similar to AA sequence:RefSeq:WP_000533767.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242047.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242046.1
COORDINATES: similar to AA sequence:RefSeq:WP_011160576.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242044.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242043.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006784556.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242039.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242038.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
COORDINATES: similar to AA sequence:RefSeq:WP_016397288.1
COORDINATES: protein motif:HMM:NF014575.2
GO:0005575 - cellular_component [Evidence IEA]
GO:0046118 - 7-methylguanosine biosynthetic process [Evidence IEA]; GO:0031167 - rRNA methylation [Evidence IEA]
16S rRNA (guanine(527)-N(7))-methyltransferase RsmG
COORDINATES: similar to AA sequence:RefSeq:WP_012242035.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]; GO:0002098 - tRNA wobble uridine modification [Evidence IEA]
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG
COORDINATES: similar to AA sequence:RefSeq:WP_012242034.1
GO:0004802 - transketolase activity [Evidence IEA]
signal recognition particle sRNA small type
COORDINATES: nucleotide motif:Rfam:14.4:RF00169
COORDINATES: similar to AA sequence:RefSeq:WP_012359174.1
GO:0008251 - tRNA-specific adenosine deaminase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0002100 - tRNA wobble adenosine to inosine editing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242031.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004797 - thymidine kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242030.1
COORDINATES: protein motif:HMM:NF019099.2
COORDINATES: protein motif:HMM:NF018685.2
COORDINATES: protein motif:HMM:NF014477.2
GO:0017013 - protein flavinylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014557.2
COORDINATES: protein motif:HMM:TIGR01945.1
RnfABCDGE type electron transport complex subunit C
COORDINATES: similar to AA sequence:RefSeq:WP_012242020.1
COORDINATES: similar to AA sequence:RefSeq:WP_012242017.1
YebC/PmpR family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015637900.1
COORDINATES: protein motif:HMM:NF014608.2
COORDINATES: protein motif:HMM:TIGR00057.1
GO:0061710 - L-threonylcarbamoyladenylate synthase [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242007.1
bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase
COORDINATES: protein motif:HMM:NF010030.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0004329 - formate-tetrahydrofolate ligase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242003.1
GO:0043365 - [formate-C-acetyltransferase]-activating enzyme activity [Evidence IEA]
pyruvate formate-lyase-activating protein
COORDINATES: protein motif:HMM:TIGR01255.1
GO:0008861 - formate C-acetyltransferase activity [Evidence IEA]
GO:0006113 - fermentation [Evidence IEA]; GO:0015942 - formate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR04265.1
GO:0008808 - cardiolipin synthase activity [Evidence IEA]
GO:0032049 - cardiolipin biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012382.2
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:NF002223.0
GO:0004019 - adenylosuccinate synthase activity [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]
GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00580.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003690 - double-stranded DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012241993.1
COORDINATES: similar to AA sequence:RefSeq:WP_012241992.1
COORDINATES: similar to AA sequence:RefSeq:WP_012241991.1
GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]
COORDINATES: protein motif:HMM:NF012616.2
GO:0000179 - rRNA (adenine-N6,N6-)-dimethyltransferase activity [Evidence IEA]
16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
COORDINATES: protein motif:HMM:NF024727.2
COORDINATES: similar to AA sequence:RefSeq:WP_012504374.1
COORDINATES: similar to AA sequence:RefSeq:WP_012241987.1
COORDINATES: similar to AA sequence:RefSeq:WP_017191663.1
COORDINATES: protein motif:HMM:NF012722.2
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_012241984.1
COORDINATES: similar to AA sequence:RefSeq:WP_011412910.1
GO:0004828 - serine-tRNA ligase activity [Evidence IEA]
GO:0006434 - seryl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012241981.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]; GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
GO:0006259 - DNA metabolic process [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016293117.1
GO:0009330 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
DNA topoisomerase (ATP-hydrolyzing) subunit B
COORDINATES: protein motif:HMM:TIGR00611.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
All proteins in this family for which functions are known are DNA-binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024672.2
RNA-binding S4 domain-containing protein
COORDINATES: protein motif:HMM:TIGR00663.1
COORDINATES: similar to AA sequence:RefSeq:WP_011160376.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003688 - DNA replication origin binding [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]; GO:0006275 - regulation of DNA replication [Evidence IEA]
chromosomal replication initiator protein DnaA
COORDINATES: similar to AA sequence:RefSeq:WP_000831329.1
COORDINATES: protein motif:HMM:TIGR00188.1
GO:0004526 - ribonuclease P activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03592.1
YidC/Oxa1 family membrane protein insertase
COORDINATES: protein motif:HMM:NF013583.2
RNA-binding cell elongation regulator Jag/EloR
COORDINATES: protein motif:HMM:NF014680.2
COORDINATES: similar to AA sequence:RefSeq:WP_012243349.1
GO:0004816 - asparagine-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0006421 - asparaginyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013125.2
COORDINATES: protein motif:HMM:NF013528.2
bifunctional oligoribonuclease/PAP phosphatase NrnA
COORDINATES: similar to AA sequence:RefSeq:WP_011412943.1
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE
COORDINATES: protein motif:HMM:NF004046.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012243323.1
YbaB/EbfC family nucleoid-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_012243322.1
COORDINATES: protein motif:HMM:TIGR04567.1
DNA-directed RNA polymerase subunit delta
COORDINATES: similar to AA sequence:RefSeq:WP_012243318.1
GO:0003883 - CTP synthase activity [Evidence IEA]
GO:0006241 - CTP biosynthetic process [Evidence IEA]; GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016292213.1
GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]
class II fructose-1,6-bisphosphate aldolase
COORDINATES: similar to AA sequence:RefSeq:WP_002359081.1
COORDINATES: similar to AA sequence:RefSeq:WP_012243310.1
GO:0004824 - lysine-tRNA ligase activity [Evidence IEA]
GO:0006430 - lysyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012243309.1
COORDINATES: similar to AA sequence:RefSeq:WP_012243308.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0051301 - cell division [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017722022.1
GO:0006166 - purine ribonucleoside salvage [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02432.1
GO:0016879 - ligase activity, forming carbon-nitrogen bonds [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00172.1
COORDINATES: protein motif:HMM:NF001033.0
COORDINATES: similar to AA sequence:RefSeq:WP_012243300.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013056.2
COORDINATES: nucleotide motif:Rfam:14.4:RF00167
purine riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:TIGR03156.1
COORDINATES: similar to AA sequence:RefSeq:WP_012358695.1
GO:0004016 - adenylate cyclase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02727.1
GO:0030272 - 5-formyltetrahydrofolate cyclo-ligase activity [Evidence IEA]
GO:0006730 - one-carbon metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF018022.2
COORDINATES: similar to AA sequence:RefSeq:WP_015759013.1
COORDINATES: protein motif:HMM:NF014711.2
COORDINATES: similar to AA sequence:RefSeq:WP_012504523.1
GO:0004347 - glucose-6-phosphate isomerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00150.1
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE
COORDINATES: protein motif:HMM:TIGR03725.1
GO:0003725 - double-stranded RNA binding [Evidence IEA]
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB
COORDINATES: protein motif:HMM:TIGR01575.1
GO:0008999 - peptide-alanine-alpha-N-acetyltransferase activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]; GO:0042254 - ribosome biogenesis [Evidence IEA]
ribosomal protein S18-alanine N-acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_012243277.1
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD
COORDINATES: similar to AA sequence:RefSeq:WP_017193432.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004819 - glutamine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006425 - glutaminyl-tRNA aminoacylation [Evidence IEA]
glutamine--tRNA ligase/YqeY domain fusion protein
COORDINATES: protein motif:HMM:NF024991.2
COORDINATES: similar to AA sequence:RefSeq:WP_012243271.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003911 - DNA ligase (NAD+) activity [Evidence IEA]
GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012243270.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF015953.2
COORDINATES: similar to AA sequence:RefSeq:WP_012243268.1
GO:0016791 - phosphatase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00544.1
GO:0008961 - phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity [Evidence IEA]
GO:0009249 - protein lipoylation [Evidence IEA]
prolipoprotein diacylglyceryl transferase
COORDINATES: protein motif:HMM:TIGR00647.1
GO:0043937 - regulation of sporulation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013786.2
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012243262.1
COORDINATES: protein motif:HMM:NF013444.2
COORDINATES: similar to AA sequence:RefSeq:WP_012243242.1
GO:0008783 - agmatinase activity [Evidence IEA]
GO:0008295 - spermidine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02384.1
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_012243238.1
GO:0045250 - cytosolic pyruvate dehydrogenase complex [Evidence IEA]
GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity [Evidence IEA]
GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IEA]
pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_012243237.1
alpha-ketoacid dehydrogenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_012243236.1
GO:0016746 - acyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012243235.1
GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0051068 - dihydrolipoamide metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF025616.2
COORDINATES: protein motif:HMM:TIGR00545.1
biotin/lipoate A/B protein ligase family protein
COORDINATES: protein motif:HMM:TIGR00147.1
GO:0001727 - lipid kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012243231.1
COORDINATES: protein motif:HMM:NF013245.2
COORDINATES: protein motif:HMM:NF037997.1
COORDINATES: similar to AA sequence:RefSeq:WP_012243219.1
GO:0008998 - ribonucleoside-triphosphate reductase activity [Evidence IEA]
anaerobic ribonucleoside triphosphate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_012243218.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]; GO:0051353 - positive regulation of oxidoreductase activity [Evidence IEA]
anaerobic ribonucleoside-triphosphate reductase activating protein
COORDINATES: similar to AA sequence:RefSeq:WP_012243217.1
GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]
class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI
COORDINATES: similar to AA sequence:RefSeq:WP_012243216.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_012243215.1
GO:0005971 - ribonucleoside-diphosphate reductase complex [Evidence IEA]
GO:0030145 - manganese ion binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit beta
COORDINATES: protein motif:HMM:NF012907.2
COORDINATES: protein motif:HMM:NF017880.2
COORDINATES: protein motif:HMM:TIGR00011.1
GO:0002161 - aminoacyl-tRNA editing activity [Evidence IEA]
GO:0043039 - tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012318.2
COORDINATES: protein motif:HMM:NF019976.2
nuclease-related domain-containing protein
COORDINATES: protein motif:HMM:NF013156.2
GO:0030246 - carbohydrate binding [Evidence IEA]
GO:0000272 - polysaccharide catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012311.2
COORDINATES: protein motif:HMM:NF016763.2
COORDINATES: similar to AA sequence:RefSeq:WP_012242776.1
type 1 glutamine amidotransferase domain-containing protein
COORDINATES: protein motif:HMM:NF012706.2
COORDINATES: protein motif:HMM:NF024438.2
COORDINATES: protein motif:HMM:NF015531.2
COORDINATES: similar to AA sequence:RefSeq:WP_012243147.1
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF013614.2
SufD family Fe-S cluster assembly protein
COORDINATES: similar to AA sequence:RefSeq:WP_012243145.1
COORDINATES: similar to AA sequence:RefSeq:WP_012243144.1
GO:0005198 - structural molecule activity [Evidence IEA]
SUF system NifU family Fe-S cluster assembly protein
COORDINATES: similar to AA sequence:RefSeq:WP_012243143.1
COORDINATES: protein motif:HMM:NF018087.2
GO:0030420 - establishment of competence for transformation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011160549.1
COORDINATES: similar to AA sequence:RefSeq:WP_016291155.1
COORDINATES: protein motif:HMM:TIGR01003.1
COORDINATES: similar to AA sequence:RefSeq:WP_012243136.1
GO:0004807 - triose-phosphate isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019165370.1
GO:0015935 - small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012243129.1
COORDINATES: similar to AA sequence:RefSeq:WP_011160518.1
GO:0009228 - thiamine biosynthetic process [Evidence IEA]; GO:0006400 - tRNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017192950.1
COORDINATES: similar to AA sequence:RefSeq:WP_012243124.1
GO:0042586 - peptide deformylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021426.2
COORDINATES: similar to AA sequence:RefSeq:WP_012243121.1
COORDINATES: similar to AA sequence:RefSeq:WP_012243120.1
COORDINATES: protein motif:HMM:TIGR02273.1
Essential for efficient processing of 16S rRNA; Essential for efficient processing of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012243118.1
GO:0052906 - tRNA (guanine(37)-N(1))-methyltransferase activity [Evidence IEA]
tRNA (guanosine(37)-N1)-methyltransferase TrmD
COORDINATES: similar to AA sequence:RefSeq:WP_011412589.1
COORDINATES: similar to AA sequence:RefSeq:WP_012243116.1
COORDINATES: similar to AA sequence:RefSeq:WP_012243115.1
GO:0004831 - tyrosine-tRNA ligase activity [Evidence IEA]
GO:0006437 - tyrosyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF039905.1
GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012243112.1
GO:0004830 - tryptophan-tRNA ligase activity [Evidence IEA]
GO:0006436 - tryptophanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00181.1
COORDINATES: similar to AA sequence:RefSeq:WP_012243110.1
COORDINATES: protein motif:HMM:NF014038.2
COORDINATES: similar to AA sequence:RefSeq:WP_000279412.1
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0019682 - glyceraldehyde-3-phosphate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
type I glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_004995031.1
GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds [Evidence IEA]; GO:0004844 - uracil DNA N-glycosylase activity [Evidence IEA]
GO:0006284 - base-excision repair [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF01831
THF riboswitches regulate genes encoding folate transporters and folate metabolism; They are most commonly found in Clostridiales and Lactobacillales; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:TIGR04518.1
GO:0005215 - transporter activity [Evidence IEA]
folate family ECF transporter S component
COORDINATES: similar to AA sequence:RefSeq:WP_012243091.1
methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO
COORDINATES: similar to AA sequence:RefSeq:WP_012243090.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012243088.1
GO:0004170 - dUTP diphosphatase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
GO:0006226 - dUMP biosynthetic process [Evidence IEA]; GO:0046081 - dUTP catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012243087.1
COORDINATES: similar to AA sequence:RefSeq:WP_012243086.1
COORDINATES: similar to AA sequence:RefSeq:WP_012358990.1
GO:0033862 - UMP kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012243084.1
GO:0008135 - translation factor activity, RNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF009897.0
GO:0004084 - branched-chain-amino-acid transaminase activity [Evidence IEA]
GO:0009081 - branched-chain amino acid metabolic process [Evidence IEA]
branched-chain amino acid aminotransferase
COORDINATES: protein motif:HMM:TIGR00055.1
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013327.2
COORDINATES: similar to AA sequence:RefSeq:WP_012243075.1
GO:0004849 - uridine kinase activity [Evidence IEA]
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
COORDINATES: protein motif:HMM:NF014068.2
COORDINATES: protein motif:HMM:NF014587.2
COORDINATES: similar to AA sequence:RefSeq:WP_012243064.1
COORDINATES: similar to AA sequence:RefSeq:WP_017192728.1
COORDINATES: protein motif:HMM:NF013607.2
low molecular weight protein-tyrosine-phosphatase
COORDINATES: protein motif:HMM:NF021028.2
dockerin type I repeat-containing protein
COORDINATES: protein motif:HMM:NF024144.2
cadherin-like beta sandwich domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012243057.1
bifunctional diguanylate cyclase/phosphodiesterase
COORDINATES: protein motif:HMM:NF024702.2
COORDINATES: protein motif:HMM:NF016144.2
COORDINATES: protein motif:HMM:NF017536.2
pirin-like C-terminal cupin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012243016.1
COORDINATES: protein motif:HMM:TIGR00589.1
methylated-DNA--[protein]-cysteine S-methyltransferase
COORDINATES: protein motif:HMM:NF013465.2
metal ABC transporter substrate-binding protein
metal ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF013143.2
COORDINATES: protein motif:HMM:NF013629.2
COORDINATES: similar to AA sequence:RefSeq:WP_012243036.1
GO:0000286 - alanine dehydrogenase activity [Evidence IEA]
GO:0006522 - alanine metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF019843.2
COORDINATES: protein motif:HMM:NF016800.2
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_012243033.1
COORDINATES: similar to AA sequence:RefSeq:WP_012243032.1
COORDINATES: similar to AA sequence:RefSeq:WP_012243031.1
GO:0004743 - pyruvate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014740.2
nucleoside-diphosphate sugar epimerase/dehydratase
COORDINATES: similar to AA sequence:RefSeq:WP_012242977.1
GO:0019134 - glucosamine-1-phosphate N-acetyltransferase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0003977 - UDP-N-acetylglucosamine diphosphorylase activity [Evidence IEA]
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]; GO:0006048 - UDP-N-acetylglucosamine biosynthetic process [Evidence IEA]
bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU
COORDINATES: protein motif:HMM:NF013431.2
COORDINATES: similar to AA sequence:RefSeq:WP_003127365.1
GO:0004356 - glutamate-ammonia ligase activity [Evidence IEA]
GO:0006542 - glutamine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012863.2
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: protein motif:HMM:NF020337.2
COORDINATES: protein motif:HMM:NF024804.2
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002312259.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0003979 - UDP-glucose 6-dehydrogenase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF027681.2
COORDINATES: protein motif:HMM:NF014453.2
NAD-dependent epimerase/dehydratase family protein
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: similar to AA sequence:RefSeq:WP_002221803.1
GO:0008879 - glucose-1-phosphate thymidylyltransferase activity [Evidence IEA]
GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
glucose-1-phosphate thymidylyltransferase RfbA
COORDINATES: similar to AA sequence:RefSeq:WP_001764656.1
GO:0008830 - dTDP-4-dehydrorhamnose 3,5-epimerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020801803.1
GO:0008460 - dTDP-glucose 4,6-dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002381675.1
GO:0008831 - dTDP-4-dehydrorhamnose reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011160782.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013591.2
COORDINATES: protein motif:HMM:NF014732.2
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
Wzz/FepE/Etk N-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR01007.1
CpsD/CapB family tyrosine-protein kinase
COORDINATES: protein motif:HMM:NF039343.1
COORDINATES: similar to AA sequence:RefSeq:WP_012504436.1
COORDINATES: protein motif:HMM:NF018877.2
COORDINATES: protein motif:HMM:NF012377.2
GO:0071704 - organic substance metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF025182.2
COORDINATES: protein motif:HMM:NF013408.2
COORDINATES: nucleotide motif:Rfam:14.4:RF01051
cyclic di-GMP riboswitch class I; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:TIGR02228.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012242950.1
COORDINATES: protein motif:HMM:NF013117.2
COORDINATES: protein motif:HMM:NF015159.2
MetQ/NlpA family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012242942.1