Micromonospora maris AB-18-032 plasmid pVMKU, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Micromonosporales; Micromonosporaceae; Micromonospora.
Genome sequence of the abyssomicin- and proximicin-producing marine actinomycete Verrucosispora maris AB-18-032
Submitted (06-APR-2011) Computational and Synthetic Biology Laboratory, Korea University, Anam Campus, Anam-dong 5-ga, Seongbuk-gu, Seoul 136-713, The Republic of Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP002639.1.\nGenome was manually curated based on annotation generated by the\nNCBI Prokaryotic Genomes Automatic Annotation Pipeline Group.\nInformation about the Pipeline can be found here:\nhttp://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html.\nBacteria available from James E.M. Stach (School of Biology Ridley\nBuilding University of Newcastle, E-mail: jem.stach@ncl.ac.uk).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/27/2023 02:02:36\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,076\nCDSs (total) :: 6,011\nGenes (coding) :: 5,917\nCDSs (with protein) :: 5,917\nGenes (RNA) :: 65\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 3\nPseudo Genes (total) :: 94\nCDSs (without protein) :: 94\nPseudo Genes (ambiguous residues) :: 0 of 94\nPseudo Genes (frameshifted) :: 21 of 94\nPseudo Genes (incomplete) :: 80 of 94\nPseudo Genes (internal stop) :: 4 of 94\nPseudo Genes (multiple problems) :: 11 of 94\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF024816.2
GO:0005515 - protein binding [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007071086.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF012257.2
GO:0030552 - cAMP binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009677303.1
COORDINATES: similar to AA sequence:RefSeq:WP_018256047.1
COORDINATES: similar to AA sequence:RefSeq:WP_018256046.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_018833965.1
COORDINATES: similar to AA sequence:RefSeq:WP_019899959.1
COORDINATES: similar to AA sequence:RefSeq:WP_018739394.1
COORDINATES: similar to AA sequence:RefSeq:WP_018255980.1
COORDINATES: similar to AA sequence:RefSeq:WP_018255981.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0015616 - DNA translocase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019899965.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019899969.1
COORDINATES: similar to AA sequence:RefSeq:WP_018739303.1
COORDINATES: similar to AA sequence:RefSeq:WP_019899971.1
COORDINATES: similar to AA sequence:RefSeq:WP_018256030.1
COORDINATES: similar to AA sequence:RefSeq:WP_019899974.1
COORDINATES: similar to AA sequence:RefSeq:WP_019899975.1
COORDINATES: similar to AA sequence:RefSeq:WP_019899976.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0005525 - GTP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019899977.1
histone-like nucleoid-structuring protein Lsr2
COORDINATES: similar to AA sequence:RefSeq:WP_018833932.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014442149.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma factor-like helix-turn-helix DNA-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007075540.1
protein phosphatase 2C domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020420228.1
COORDINATES: similar to AA sequence:RefSeq:WP_018255962.1
COORDINATES: similar to AA sequence:RefSeq:WP_018255963.1
COORDINATES: similar to AA sequence:RefSeq:WP_019899990.1
COORDINATES: similar to AA sequence:RefSeq:WP_019899987.1
COORDINATES: protein motif:HMM:NF025561.2
COORDINATES: protein motif:HMM:NF016724.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018825692.1
COORDINATES: similar to AA sequence:RefSeq:WP_018820121.1
COORDINATES: similar to AA sequence:RefSeq:WP_018825690.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_018223859.1
COORDINATES: similar to AA sequence:RefSeq:WP_018787892.1
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018223857.1
COORDINATES: similar to AA sequence:RefSeq:WP_018223856.1
COORDINATES: similar to AA sequence:RefSeq:WP_018737485.1
COORDINATES: similar to AA sequence:RefSeq:WP_018737484.1
COORDINATES: similar to AA sequence:RefSeq:WP_018223853.1
COORDINATES: similar to AA sequence:RefSeq:WP_018223852.1
COORDINATES: similar to AA sequence:RefSeq:WP_018223851.1
COORDINATES: similar to AA sequence:RefSeq:WP_018825683.1
COORDINATES: similar to AA sequence:RefSeq:WP_016818003.1
COORDINATES: similar to AA sequence:RefSeq:WP_014441402.1
COORDINATES: similar to AA sequence:RefSeq:WP_019033888.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF024824.2