Nitrincola iocasae strain KXZD1103 plasmid unnamed1, complete sequence.
Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Oceanospirillaceae; Nitrincola.
Nitrincola iocasae sp. nov., a bacterium isolated from the sediment collected at a cold seep field in South China Sea
Submitted (20-SEP-2019) Center of Deep Sea Research, Institute of Oceanology, Chinese Academy of Sciences, 7 Nanhai Road, Qingdao, Shandong 266071, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP044223.1.\nBacteria and source DNA available from Center of Deep Sea Research,\nInstitute of Oceanology, Chinese Academy of Sciences.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 15-SEP-2019\nAssembly Method :: SMRT Link v. 5.0.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 406.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/08/2022 05:27:31\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,888\nCDSs (total) :: 3,811\nGenes (coding) :: 3,773\nCDSs (with protein) :: 3,773\nGenes (RNA) :: 77\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 55\nncRNAs :: 7\nPseudo Genes (total) :: 38\nCDSs (without protein) :: 38\nPseudo Genes (ambiguous residues) :: 0 of 38\nPseudo Genes (frameshifted) :: 4 of 38\nPseudo Genes (incomplete) :: 33 of 38\nPseudo Genes (internal stop) :: 3 of 38\nPseudo Genes (multiple problems) :: 2 of 38\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008929975.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000086826.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0008233 - peptidase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
conjugative transfer signal peptidase TraF
COORDINATES: similar to AA sequence:RefSeq:WP_011655356.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011137971.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014708279.1
conjugal transfer transcriptional regulator TraJ
COORDINATES: similar to AA sequence:RefSeq:WP_001127128.1
COORDINATES: similar to AA sequence:RefSeq:WP_011304098.1
COORDINATES: similar to AA sequence:RefSeq:WP_008929982.1
COORDINATES: similar to AA sequence:RefSeq:WP_014708282.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798727.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF023168.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008929986.1
COORDINATES: similar to AA sequence:RefSeq:WP_008929987.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_014579475.1
COORDINATES: similar to AA sequence:RefSeq:WP_008929989.1
COORDINATES: similar to AA sequence:RefSeq:WP_014579473.1
COORDINATES: similar to AA sequence:RefSeq:WP_008929991.1
COORDINATES: similar to AA sequence:RefSeq:WP_008929992.1
COORDINATES: similar to AA sequence:RefSeq:WP_014579470.1
COORDINATES: similar to AA sequence:RefSeq:WP_014579469.1
COORDINATES: similar to AA sequence:RefSeq:WP_014708245.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229657.1
COORDINATES: similar to AA sequence:RefSeq:WP_001516695.1
quinolone resistance pentapeptide repeat protein QnrS2
COORDINATES: similar to AA sequence:RefSeq:WP_008929949.1
COORDINATES: similar to AA sequence:RefSeq:WP_008929950.1
COORDINATES: similar to AA sequence:RefSeq:WP_008929951.1
COORDINATES: similar to AA sequence:RefSeq:WP_008929952.1
COORDINATES: similar to AA sequence:RefSeq:WP_011171719.1
COORDINATES: similar to AA sequence:RefSeq:WP_010676131.1
COORDINATES: similar to AA sequence:RefSeq:WP_011013264.1
VirB4 family type IV secretion/conjugal transfer ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_008929956.1
COORDINATES: similar to AA sequence:RefSeq:WP_008929957.1
GO:0009291 - unidirectional conjugation [Evidence IEA]
P-type conjugative transfer protein TrbG
COORDINATES: similar to AA sequence:RefSeq:WP_011798704.1
COORDINATES: similar to AA sequence:RefSeq:WP_014579508.1
COORDINATES: similar to AA sequence:RefSeq:WP_014579507.1
P-type conjugative transfer protein TrbJ
COORDINATES: similar to AA sequence:RefSeq:WP_008929961.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0009292 - horizontal gene transfer [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014579505.1
P-type conjugative transfer protein TrbL
COORDINATES: similar to AA sequence:RefSeq:WP_020405870.1
COORDINATES: similar to AA sequence:RefSeq:WP_008929963.1
COORDINATES: similar to AA sequence:RefSeq:WP_014579502.1
COORDINATES: similar to AA sequence:RefSeq:WP_008929965.1
COORDINATES: similar to AA sequence:RefSeq:WP_014708264.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008929969.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012850371.1
COORDINATES: similar to AA sequence:RefSeq:WP_014317772.1
COORDINATES: similar to AA sequence:RefSeq:WP_014579490.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014579489.1