Psychrobacter alimentarius strain PAMC 27889 plasmid pPAMC27889, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Psychrobacter.
Genome sequencing of Psychrobacter alimentarius PAMC 27889
Submitted (23-MAR-2016) Division of Life Sciences, Korea Polar Research Institute, 26, Songdomirae-ro, Yeonsu-gu, Incheon 21990, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP014946.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Psychrobacter alimentarius PAMC 27889\nlat_lon :: -72.410000, 165.589999\ndepth :: 0 cm\nalt_elev :: 1,652 m\ncountry :: Antarctica\nenvironment :: Rock\ngeo_loc_name :: Antarctica: Northern Victoria Land\ncollection_date :: 2013.12.19\nenv_biome :: ENVO:00002026\nenv_feature :: ENVO:00000173\nenv_material :: ENVO:00001995\nploidy :: haploid\nnum_replicons :: 2\nref_biomaterial :: Missing\nsource_mat_id :: PAMC 27889\nbiotic_relationship :: free living\ntrophic_level :: chemoheterotroph\nrel_to_oxygen :: aerobic\nisol_growth_condt :: 0.1X TSB Agar, at celsius degree 10\nsequencing_meth :: PacBio RS II sequencing\nassembly :: SMRT Analysis v2.3.0\nfinishing_strategy :: complete; 185.42X coverage; 2 contigs\nannot_source :: prodigal v2.6.1\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT Analysis v. 2.3.0\nGenome Coverage :: 185.42X coverage\nSequencing Technology :: PacBio RS II with P6-C4 chemistry\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 21:30:27\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,787\nCDSs (total) :: 2,718\nGenes (coding) :: 2,699\nCDSs (with protein) :: 2,699\nGenes (RNA) :: 69\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 4\nPseudo Genes (total) :: 19\nCDSs (without protein) :: 19\nPseudo Genes (ambiguous residues) :: 0 of 19\nPseudo Genes (frameshifted) :: 5 of 19\nPseudo Genes (incomplete) :: 18 of 19\nPseudo Genes (internal stop) :: 3 of 19\nPseudo Genes (multiple problems) :: 4 of 19\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_020444580.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020444578.1
COORDINATES: similar to AA sequence:RefSeq:WP_005708257.1
excalibur calcium-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010197034.1
COORDINATES: similar to AA sequence:RefSeq:YP_004994878.1
COORDINATES: similar to AA sequence:RefSeq:WP_003668143.1
COORDINATES: similar to AA sequence:RefSeq:WP_020444571.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_003669743.1
COORDINATES: similar to AA sequence:RefSeq:WP_011960898.1
COORDINATES: protein motif:HMM:NF019843.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611467.1
GO:0015074 - DNA integration [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_011954799.1
COORDINATES: similar to AA sequence:RefSeq:WP_004780041.1
COORDINATES: protein motif:HMM:NF015354.2