Psychrobacter alimentarius strain PAMC 27889 plasmid pPAMC27889, complete sequence.
type: Entry
definition: Psychrobacter alimentarius strain PAMC 27889 plasmid pPAMC27889, complete sequence.
sequence version: NZ_CP014946.1
sequence date: 2023-02-06
sequence: sequence
division: CON
label: NZ_CP014946.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN04549283
keyword: GSC:MIGS:2.1
keyword: RefSeq
source: Psychrobacter alimentarius
organism: Psychrobacter alimentarius
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Psychrobacter.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP014946.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Psychrobacter alimentarius PAMC 27889\nlat_lon :: -72.410000, 165.589999\ndepth :: 0 cm\nalt_elev :: 1,652 m\ncountry :: Antarctica\nenvironment :: Rock\ngeo_loc_name :: Antarctica: Northern Victoria Land\ncollection_date :: 2013.12.19\nenv_biome :: ENVO:00002026\nenv_feature :: ENVO:00000173\nenv_material :: ENVO:00001995\nploidy :: haploid\nnum_replicons :: 2\nref_biomaterial :: Missing\nsource_mat_id :: PAMC 27889\nbiotic_relationship :: free living\ntrophic_level :: chemoheterotroph\nrel_to_oxygen :: aerobic\nisol_growth_condt :: 0.1X TSB Agar, at celsius degree 10\nsequencing_meth :: PacBio RS II sequencing\nassembly :: SMRT Analysis v2.3.0\nfinishing_strategy :: complete; 185.42X coverage; 2 contigs\nannot_source :: prodigal v2.6.1\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT Analysis v. 2.3.0\nGenome Coverage :: 185.42X coverage\nSequencing Technology :: PacBio RS II with P6-C4 chemistry\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 21:30:27\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,787\nCDSs (total) :: 2,718\nGenes (coding) :: 2,699\nCDSs (with protein) :: 2,699\nGenes (RNA) :: 69\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 4\nPseudo Genes (total) :: 19\nCDSs (without protein) :: 19\nPseudo Genes (ambiguous residues) :: 0 of 19\nPseudo Genes (fram…

sequence
subclass of: SO_0000155
sequence length: 16905
topology: circular
so has quality: SO_0000988
location: 1..16905
location: region:1-16905:1
RO_0002162: 261164

NZ_CP014946
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN04549283
type: BioSample
SIO_000068: biosample

1
title: Genome sequencing of Psychrobacter alimentarius PAMC 27889
author: Lee, J.
author: Kim, O.-S.
journal: Unpublished

2
title: Direct Submission
author: Lee, J.
author: Kim, O.-S.
journal: Submitted (23-MAR-2016) Division of Life Sciences, Korea Polar Research Institute, 26, Songdomirae-ro, Yeonsu-gu, Incheon 21990, South Korea

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16905:1
position: 16905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16905:1:source
so part of: sequence
organism: Psychrobacter alimentarius
mol type: genomic DNA
strain: PAMC 27889
isolation source: rock (ENVO:00001995)
culture collection: PAMC:27889
plasmid: pPAMC27889
country: Antarctica: Northern Victoria Land
lat lon: 72.41 S 165.59000000 E
collection date: 2013-12-19

261164
type: Taxonomy
SIO_000068: taxonomy

A3K91_RS13805
type: Gene
subclass of: SO_0000704
RO_0002162: 261164
locus tag: A3K91_RS13805
old locus tag: A3K91_2737
so part of: sequence
location: 232..1167
location: region:232-1167:1
so has part: feature:232-1167:1:exon
subclass of: SO_0000010

position:232:1
position: 232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1167:1
position: 1167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:232-1167:1:exon

A3K91_RS13805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 261164
locus tag: A3K91_RS13805
old locus tag: A3K91_2737
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020444580.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MENNLVVQSNELILATYTMQKTDKELMLACISQIDSRPDAPEVTKQTEFKVSVDDIKSLFFGKKSKNEQNVYRDMENASKRLYDVDIVMSLPENKILQTRLISSIVYDPDNGEVSLSFAEKILPYLTQLRANFTKYKLLEIGELSSIHSIRLYELVVMWVNQFQYSKDFTLEEFKHAMNVKGKYKQFGHLRQFVIETAINDINENTNYSVSVEYQKKSRGKGFRGLKLSFHKKTLDKLTGADGALSQAAIQSIVDSVQFMNDYNDHPSLSYDGKMQTDAFKREMINIIQREPESFNKPNKGLESYLPKIKH
SIO_010081: A3K91_RS13805
subclass of: SO_0000673
so part of: A3K91_RS13805
location: 232..1167
location: region:232-1167:1
so has part: feature:232-1167:1:exon

WP_062846038.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:232-1167:1:exon

A3K91_RS13810
type: Gene
subclass of: SO_0000704
RO_0002162: 261164
locus tag: A3K91_RS13810
old locus tag: A3K91_2738
so part of: sequence
location: complement(1192..1710)
location: region:1192-1710:-1
so has part: feature:1192-1710:-1:exon
subclass of: SO_0000010

position:1192:-1
position: 1192
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1710:-1
position: 1710
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1192-1710:-1:exon

A3K91_RS13810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 261164
locus tag: A3K91_RS13810
old locus tag: A3K91_2738
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020444578.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid replication DNA-binding protein
translation: MNISVTKAAKEWGVSRTTIYQKVNDGELSRTADKKIDVSEMLRVFGEPISKKRTERSVNTVQSTPLNSQSVQYNTDIEHLLALEKLKNEHLSQQVSDQKKLIENYQQQIGQLNKTLDKANASIQDFAQVRLLEFKQAEMSDEPPLKPEQEQEQEKKDDSIVATAKKKKRWFF
SIO_010081: A3K91_RS13810
subclass of: SO_0000673
so part of: A3K91_RS13810
location: complement(1192..1710)
location: region:1192-1710:-1
so has part: feature:1192-1710:-1:exon

WP_062846039.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1192-1710:-1:exon

A3K91_RS13815
type: Gene
subclass of: SO_0000704
RO_0002162: 261164
locus tag: A3K91_RS13815
old locus tag: A3K91_2739
so part of: sequence
location: 1931..2206
location: region:1931-2206:1
so has part: feature:1931-2206:1:exon
subclass of: SO_0000010

position:1931:1
position: 1931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2206:1
position: 2206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1931-2206:1:exon

A3K91_RS13815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 261164
locus tag: A3K91_RS13815
old locus tag: A3K91_2739
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005708257.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: excalibur calcium-binding domain-containing protein
translation: MKKVILSMALSLFALSSQAAVTVTDNPFYSDVEVEHPLFAKGAGGSQCKGLPRTCGQMVSCEQAKQALKCGNTKLDRDKDGVPCESICPGG
SIO_010081: A3K91_RS13815
subclass of: SO_0000673
so part of: A3K91_RS13815
location: 1931..2206
location: region:1931-2206:1
so has part: feature:1931-2206:1:exon

WP_062846040.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1931-2206:1:exon

A3K91_RS13820
type: Gene
subclass of: SO_0000704
RO_0002162: 261164
locus tag: A3K91_RS13820
old locus tag: A3K91_2740
so part of: sequence
location: 2179..2589
location: region:2179-2589:1
so has part: feature:2179-2589:1:exon
subclass of: SO_0000010

position:2179:1
position: 2179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2589:1
position: 2589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2179-2589:1:exon

A3K91_RS13820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 261164
locus tag: A3K91_RS13820
old locus tag: A3K91_2740
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010197034.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRINMSRWLIAVASIVMIGCSSGNTEDDLYGSGFIEVNEQTWNKDYTTPYPFTVAEGEIACASNPSFGREVFFHPKGYTDESYVGIPLNKAAVDGLKLSRLTPNVPYSVKEGADLNEAVQIGLRVCDEQENELANY
SIO_010081: A3K91_RS13820
subclass of: SO_0000673
so part of: A3K91_RS13820
location: 2179..2589
location: region:2179-2589:1
so has part: feature:2179-2589:1:exon

WP_062846041.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2179-2589:1:exon

A3K91_RS13825
type: Gene
subclass of: SO_0000704
RO_0002162: 261164
locus tag: A3K91_RS13825
old locus tag: A3K91_2741
so part of: sequence
location: 3733..4896
location: region:3733-4896:1
so has part: feature:3733-4896:1:exon
subclass of: SO_0000010

position:3733:1
position: 3733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4896:1
position: 4896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3733-4896:1:exon

A3K91_RS13825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 261164
locus tag: A3K91_RS13825
old locus tag: A3K91_2741
EC number: 1.1.1.-
inference: COORDINATES: similar to AA sequence:RefSeq:YP_004994878.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: zinc-dependent alcohol dehydrogenase
translation: MRALTYHGAKDVRVDNVPEPKLQEKDDVILRVTATAICGSDLHLYRGKMPATEEGDIFGHEFMGVVEEVGSEVTAVKKGDRVVIPFVIACGNCFFCQHDLMSACETTNTGPGAAINKKIIPPPAALFGFSHLYGGIPGGQAEFVRVPKGNFNPFKVNGSLSDEKVLFLSDILPTAWQAVTNANITKGSTVAIYGAGPVGLLSAACAKMLGAEQIFVVDHNDYRLQYAKDTYGAIPVNFDKVDAAEFIIEQTKGHRGVDGVIDAIGFEAKGSMLETIMTNLKIEGSSGAALRQCIAAVRRGGVVSVPGVYAGPIHGFLFGDAFDKGLTFKMGQTHVHKYLPQLLEYIENGDLSPEAIITHRMNLSDAAKGYEIFEKREEECRKVILTP
SIO_010081: A3K91_RS13825
subclass of: SO_0000673
so part of: A3K91_RS13825
location: 3733..4896
location: region:3733-4896:1
so has part: feature:3733-4896:1:exon

WP_025645663.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3733-4896:1:exon

A3K91_RS14255
type: Gene
subclass of: SO_0000704
RO_0002162: 261164
locus tag: A3K91_RS14255
so part of: sequence
location: complement(5112..5315)
location: region:5112-5315:-1
so has part: feature:5112-5315:-1:exon
subclass of: SO_0000010

position:5112:-1
position: 5112
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5315:-1
position: 5315
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5112-5315:-1:exon

A3K91_RS14255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 261164
locus tag: A3K91_RS14255
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003668143.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVQWEDRTKTIKELIKELQSFEDQNLIVMITNDEGETFNSVTLVSKGFVANKDDPDKYEKVYCALHF
SIO_010081: A3K91_RS14255
subclass of: SO_0000673
so part of: A3K91_RS14255
location: complement(5112..5315)
location: region:5112-5315:-1
so has part: feature:5112-5315:-1:exon

WP_062846042.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5112-5315:-1:exon

A3K91_RS13835
type: Gene
subclass of: SO_0000704
RO_0002162: 261164
locus tag: A3K91_RS13835
old locus tag: A3K91_2742
so part of: sequence
location: 5445..6035
location: region:5445-6035:1
so has part: feature:5445-6035:1:exon
subclass of: SO_0000010

position:5445:1
position: 5445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6035:1
position: 6035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5445-6035:1:exon

A3K91_RS13835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 261164
locus tag: A3K91_RS13835
old locus tag: A3K91_2742
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020444571.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MTVRIYVRASTKDQDAKRALSDLISFSQSYDDIYAEYIEHFSGTKLDRPVLAKLLKDAEQGDILLVESVDRLSRLSQDDFAILKQRIKDKGLRLVVADLPTTHTVSKGMTGDILTVINHMLIDLLATMAKLDNDKRRERIKQGLANSGYKPTGKKPNTTKHNRIKELASKNNMTKEEIAKAVGVGVATVYRVLKQG
SIO_010081: A3K91_RS13835
subclass of: SO_0000673
so part of: A3K91_RS13835
location: 5445..6035
location: region:5445-6035:1
so has part: feature:5445-6035:1:exon

WP_062846043.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5445-6035:1:exon

A3K91_RS13840
type: Gene
subclass of: SO_0000704
RO_0002162: 261164
locus tag: A3K91_RS13840
old locus tag: A3K91_2743
so part of: sequence
location: complement(6150..6416)
location: region:6150-6416:-1
so has part: feature:6150-6416:-1:exon
subclass of: SO_0000010

position:6150:-1
position: 6150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6416:-1
position: 6416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6150-6416:-1:exon

A3K91_RS13840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 261164
locus tag: A3K91_RS13840
old locus tag: A3K91_2743
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQNIKKQTAISSLDFNNLRKLMDALINLKKIDDLDSLDTDYSFEWQEDANEMIDGINKYVEQTLASLEAESYQNAHNHLKLSYLEQLG
SIO_010081: A3K91_RS13840
subclass of: SO_0000673
so part of: A3K91_RS13840
location: complement(6150..6416)
location: region:6150-6416:-1
so has part: feature:6150-6416:-1:exon

WP_157769657.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6150-6416:-1:exon

A3K91_RS13845
type: Gene
subclass of: SO_0000704
RO_0002162: 261164
locus tag: A3K91_RS13845
old locus tag: A3K91_2744
so part of: sequence
location: complement(6614..7822)
location: region:6614-7822:-1
so has part: feature:6614-7822:-1:exon
subclass of: SO_0000010

position:6614:-1
position: 6614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7822:-1
position: 7822
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6614-7822:-1:exon

A3K91_RS13845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 261164
locus tag: A3K91_RS13845
old locus tag: A3K91_2744
EC number: 1.-.-.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003669743.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: alpha-hydroxy acid oxidase
translation: MKDLSKITNIEDLRQVAERKVPRMFYDYVDSGSWTETTYHNNETDFDRIKLRQRVMINMEGRSLATEMLGMPVNMPVAIAPTGFTGMMWADGEIHAARAAEKFGVPFSLSTMSICSIEDVATHTSAPFWFQLYMMRDQEFIANLIRRAKEANCSALILTADLQVLGQRHKDIKNGLSAPPKPTLANILNLMTKPQWCMNMLGTKRRTFGNIVGHAKNVEDISSLSAWTAEQFDPALSWDDVARIKDMWGGKLIIKGIMEPEDAIMAARSGADALVVSNHGGRQLDGAPSSIAALSDIIQAVHAENSDIEVWLDSGIRSGQDVLKAISLGAKGTLIGRAFLYGLGAYGEDGVRRALEIIYKECDISMAFCGHTNIQEVTDDILVNGTYEQLKSALPYIAPMRW
SIO_010081: A3K91_RS13845
subclass of: SO_0000673
so part of: A3K91_RS13845
location: complement(6614..7822)
location: region:6614-7822:-1
so has part: feature:6614-7822:-1:exon

WP_062846045.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6614-7822:-1:exon

A3K91_RS13850
type: Gene
subclass of: SO_0000704
RO_0002162: 261164
locus tag: A3K91_RS13850
old locus tag: A3K91_2745
so part of: sequence
location: complement(7954..9714)
location: region:7954-9714:-1
so has part: feature:7954-9714:-1:exon
subclass of: SO_0000010

position:7954:-1
position: 7954
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9714:-1
position: 9714
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7954-9714:-1:exon

A3K91_RS13850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 261164
locus tag: A3K91_RS13850
old locus tag: A3K91_2745
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011960898.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: L-lactate permease
translation: MYTFLALAPILVVFLLLVVLRLPAKISMSAAYLATALLAFFVWHASGAQVAAATVNGIIVALTILFIVFAAILLLNTLKESGAIIAIRKGFMDISPDRRVQAIIVAWLFCSLVEGSSGFGTPSAIGTPLLLALGFPAMASVMVMLIIQSTPVSFGAVGTPILLGVWSGISDKQDLAQSIAPTSAENYLLQITANIGLLHALVGFLIPLILSAFLTRFFGEKRSFIEGLKVWPFALFAGLSFTIPYFLVAKYLGPEFPSLVGGFIGLLIVLPAAKRGFLMPKDIFDFAPRDDWDKDWLGTLDEEQYDDSIAPKFTLIRAFSPYIIVIGLLIVSRVVTPLKNFLVGDFTTINLANLFGTTISSKIQLAYSPGTILIITSLLCILLFKMNRQAVKRSWINSAKTMIAAAPALLFSVPMVQVFINSGSAADVATSLPAMPILLAESAAGAFQNAWPLVSPWIGAMGAFIAGSNTISNMMFSYFQWSTASQIGLDSSHAAQVVALQAVGGAAGNMISVHNVVAACAVVGLIDKEGYVIRKTLLAMIYYVIQAGLIGMGIIFGDFWWWILAIIWPVVFFVLMSLTSRKKAIN
SIO_010081: A3K91_RS13850
subclass of: SO_0000673
so part of: A3K91_RS13850
location: complement(7954..9714)
location: region:7954-9714:-1
so has part: feature:7954-9714:-1:exon

WP_062846046.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7954-9714:-1:exon

A3K91_RS13855
type: Gene
subclass of: SO_0000704
RO_0002162: 261164
locus tag: A3K91_RS13855
old locus tag: A3K91_2746
so part of: sequence
location: complement(10594..11028)
location: region:10594-11028:-1
so has part: feature:10594-11028:-1:exon
subclass of: SO_0000010

position:10594:-1
position: 10594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11028:-1
position: 11028
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10594-11028:-1:exon

A3K91_RS13855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 261164
locus tag: A3K91_RS13855
old locus tag: A3K91_2746
inference: COORDINATES: protein motif:HMM:NF019843.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tetratricopeptide repeat protein
translation: MQLLKNIVTNGLMVLGLSFGLMVSSTAMEHVKPTAQKISKAEAEKVEATKYLAEQGVAKWQYVLSVRYRLGSGVPKDREKHLYWLNKAIDQDYIFAQLEMGQIYEAGDFVRQNKSTAKEWYGKACDGGYVYGCQSYRRLNEQGY
SIO_010081: A3K91_RS13855
subclass of: SO_0000673
so part of: A3K91_RS13855
location: complement(10594..11028)
location: region:10594-11028:-1
so has part: feature:10594-11028:-1:exon

WP_062846047.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10594-11028:-1:exon

A3K91_RS13860
type: Gene
subclass of: SO_0000704
RO_0002162: 261164
locus tag: A3K91_RS13860
old locus tag: A3K91_2747
so part of: sequence
location: 11160..11609
location: region:11160-11609:1
so has part: feature:11160-11609:1:exon
subclass of: SO_0000010

position:11160:1
position: 11160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11609:1
position: 11609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11160-11609:1:exon

A3K91_RS13860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 261164
locus tag: A3K91_RS13860
old locus tag: A3K91_2747
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKYIKHFVNSYGEHTWDFTYYYHEVVPKILKHRDELSPILSSDLNGIDNREKTLNKGIIQTIYYDLENDRISLKIEQRQGKDLIEIIYSGIVNVNINCCILPITIMVHEVDVTPDSNIIHSLFLLGDTEIVFECKKIELKTIPLEKVTS
SIO_010081: A3K91_RS13860
subclass of: SO_0000673
so part of: A3K91_RS13860
location: 11160..11609
location: region:11160-11609:1
so has part: feature:11160-11609:1:exon

WP_062846048.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11160-11609:1:exon

A3K91_RS13865
type: Gene
subclass of: SO_0000704
RO_0002162: 261164
locus tag: A3K91_RS13865
old locus tag: A3K91_2748
pseudo: true
so part of: sequence
location: <11699..12031
location: region:11699-12031:1
so has part: feature:11699-12031:1:exon
subclass of: SO_0000010

position:11699:1
position: 11699
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:12031:1
position: 12031
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11699-12031:1:exon

A3K91_RS13865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 261164
locus tag: A3K91_RS13865
old locus tag: A3K91_2748
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611467.1
GO process: GO:0015074 - DNA integration [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DDE-type integrase/transposase/recombinase
SIO_010081: A3K91_RS13865
subclass of: SO_0000673
so part of: A3K91_RS13865
location: <11699..12031
location: region:11699-12031:1
so has part: feature:11699-12031:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11699-12031:1:exon

A3K91_RS13870
type: Gene
subclass of: SO_0000704
RO_0002162: 261164
locus tag: A3K91_RS13870
old locus tag: A3K91_2749
so part of: sequence
location: complement(12350..12796)
location: region:12350-12796:-1
so has part: feature:12350-12796:-1:exon
subclass of: SO_0000010

position:12350:-1
position: 12350
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12796:-1
position: 12796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12350-12796:-1:exon

A3K91_RS13870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 261164
locus tag: A3K91_RS13870
old locus tag: A3K91_2749
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011954799.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRSLLLTTMCLTGSLALVACNNHRADTTDLSKQPTIEVPVASAAFTAFGNTAKEKIWRIVIEGNELSIEANFLKPTTATVIVEGSGSVNTEGVEYASTINGQPIVVNIKNNLCIDDNGYQNELTAILTYAGEVYQGCAVAGAIEIAPT
SIO_010081: A3K91_RS13870
subclass of: SO_0000673
so part of: A3K91_RS13870
location: complement(12350..12796)
location: region:12350-12796:-1
so has part: feature:12350-12796:-1:exon

WP_062846050.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12350-12796:-1:exon

A3K91_RS13875
type: Gene
subclass of: SO_0000704
RO_0002162: 261164
locus tag: A3K91_RS13875
old locus tag: A3K91_2750
so part of: sequence
location: 13050..13469
location: region:13050-13469:1
so has part: feature:13050-13469:1:exon
subclass of: SO_0000010

position:13050:1
position: 13050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13469:1
position: 13469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13050-13469:1:exon

A3K91_RS13875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 261164
locus tag: A3K91_RS13875
old locus tag: A3K91_2750
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004780041.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PPC domain-containing protein
translation: MKNLTAAILIALPVLMVSPTVMAASSDAVAKTVDVQFKKGASSANYYGKLKGSKYDSYTFYAKKNQKLSVKTTGGNVDSYLFNKNLSDSVNVGEYSSELDNQGYYKLPYSGKYELRILQPRSQASKGKTPPYWLELSIL
SIO_010081: A3K91_RS13875
subclass of: SO_0000673
so part of: A3K91_RS13875
location: 13050..13469
location: region:13050-13469:1
so has part: feature:13050-13469:1:exon

WP_062846051.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13050-13469:1:exon

A3K91_RS13880
type: Gene
subclass of: SO_0000704
RO_0002162: 261164
locus tag: A3K91_RS13880
old locus tag: A3K91_2751
so part of: sequence
location: complement(13791..14309)
location: region:13791-14309:-1
so has part: feature:13791-14309:-1:exon
subclass of: SO_0000010

position:13791:-1
position: 13791
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14309:-1
position: 14309
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13791-14309:-1:exon

A3K91_RS13880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 261164
locus tag: A3K91_RS13880
old locus tag: A3K91_2751
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSVSNNKAPVSIFDNQDSNELKERQRLEELKRQAKVQQVKLEKRLNKQKILMGAFLGQVLATDGESEQMIREYFAIHFPDFLTRKSDKELFKSMIESLGGDMGLGEEEGPFVANAKENNQEDFDQNTGFESNQPSSSHQTQSDSMANYGEQDSLLDDNSYATGVNNPDLRGQ
SIO_010081: A3K91_RS13880
subclass of: SO_0000673
so part of: A3K91_RS13880
location: complement(13791..14309)
location: region:13791-14309:-1
so has part: feature:13791-14309:-1:exon

WP_062846052.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13791-14309:-1:exon

A3K91_RS13885
type: Gene
subclass of: SO_0000704
RO_0002162: 261164
locus tag: A3K91_RS13885
old locus tag: A3K91_2752
so part of: sequence
location: 14598..16763
location: region:14598-16763:1
so has part: feature:14598-16763:1:exon
subclass of: SO_0000010

position:14598:1
position: 14598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16763:1
position: 16763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14598-16763:1:exon

A3K91_RS13885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 261164
locus tag: A3K91_RS13885
old locus tag: A3K91_2752
inference: COORDINATES: protein motif:HMM:NF015354.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobA/MobL family protein
translation: MTMVHIATKAISRKAGQSAVACAAYRAGDVLDDAKYGKTHDYSKKSGVMSSDIVLPFSLKALGVSVDRETLWNTAEAAETRSDSRVAREWLINLPHELSEEERHSLAINFAQKLCDDMDVIADVCIHRPVMKLPFDPNVPPSSKYLREDEENPDPRNFHAHILVTTRAPTIGPNKTLAFDPKLKTPFEWSNKKRKAHDLPSSMQEIKRIREMWVDTANKVLAEYHLPLMDARSYKDQGLDQQPTIKMGVEATAMERRGITTEKGNTNRAIKARNNLVADNHIKQEADNERRISALRKGLAWATEKNARLPGSIGGTKQRADFAKHLSGSSEYYITYCTKQSHRTAIRVDDTKRCVEEAKSGIAWAAKQCEDLPKRCDDTKQRINDTKQENNKLTQRIDDTKQAIEGITEAIGKSNIEINKATERSARPAPSPFDDDARRARAARLDRQEGRIDRDTRANRFEDERIFEYAERMKLHLAMRLIQRHREAMAINWAQGETAADAPDKFDQRQVALLSEFAQRHGIEDHDKAVEFTAHLRQVAKRFDYTLVENNKAIIKLLRDPNAEREQYLALTKHFTDFRDNIDQKRAAFNTSIIDKLGGSAGEVGRMTRDIISSSSYIEGLNHYINNDSHSVEARDVAKEYLADTLDKTCQQFKLALRDVNSLPPTQRKTYSEALKATLETFTEQYGKELSESQHKALQGGLESYKHQVNKTHSPSRGFSL
SIO_010081: A3K91_RS13885
subclass of: SO_0000673
so part of: A3K91_RS13885
location: 14598..16763
location: region:14598-16763:1
so has part: feature:14598-16763:1:exon

WP_062846053.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14598-16763:1:exon