Chinemys reevesi mitochondrion, complete genome.
type: Entry
definition: Chinemys reevesi mitochondrion, complete genome.
sequence version: NC_006082.1
sequence date: 2010-02-01
sequence: sequence
division: VRT
label: NC_006082.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA12419
keyword: RefSeq
source: mitochondrion Mauremys reevesii (Reeves' turtle)
organism: Mauremys reevesii
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys.
reference: 1
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence was derived from AY676201.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16576
topology: circular
so has quality: SO_0000988
location: 1..16576
location: region:1-16576:1
RO_0002162: 260615

NC_006082
type: RefSeq
SIO_000068: refseq

PRJNA12419
type: BioProject
SIO_000068: bioproject

1
title: Chinemys reevesi mitochondrial DNA
author: Nie, L.
author: Pu, Y.
author: Peng, Q.
journal: Unpublished

2
title: Direct Submission
journal: Submitted (12-AUG-2004) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Nie, L.
author: Pu, Y.
author: Peng, Q.
journal: Submitted (04-JUL-2004) Anhui Normal University, College of life Science, East Beijing Road 1, Wuhu, Anhui 241000, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16576:1
position: 16576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16576:1:source
so part of: sequence
organism: Mauremys reevesii
organelle: mitochondrion
mol type: genomic DNA
common: Reeves' turtle

260615
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 260615
product: tRNA-Phe
anticodon: (pos:32..34,aa:Phe,seq:gaa)
so part of: sequence
location: 1..72
location: region:1-72:1
so has part: feature:1-72:1:region

position:72:1
position: 72
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-72:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 260615
product: s-rRNA
so part of: sequence
location: 73..1041
location: region:73-1041:1
so has part: feature:73-1041:1:region

position:73:1
position: 73
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1041:1
position: 1041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:73-1041:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 260615
product: tRNA-Val
anticodon: (pos:1073..1075,aa:Val,seq:tac)
so part of: sequence
location: 1042..1111
location: region:1042-1111:1
so has part: feature:1042-1111:1:region

position:1042:1
position: 1042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1111:1
position: 1111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1042-1111:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 260615
product: l-rRNA
so part of: sequence
location: 1112..2715
location: region:1112-2715:1
so has part: feature:1112-2715:1:region

position:1112:1
position: 1112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2715:1
position: 2715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1112-2715:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 260615
product: tRNA-Leu
anticodon: (pos:2753..2755,aa:Leu,seq:taa)
codon recognized: UUR
so part of: sequence
location: 2716..2791
location: region:2716-2791:1
so has part: feature:2716-2791:1:region

position:2716:1
position: 2716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2791:1
position: 2791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2716-2791:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 260615
gene: ND1
so part of: sequence
location: 2792..3763
location: region:2792-3763:1
so has part: feature:2792-3763:1:exon
subclass of: SO_0000010

2940637
type: Gene
SIO_000068: ncbigene

position:2792:1
position: 2792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3763:1
position: 3763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2792-3763:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 260615
gene: ND1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MKMLLINLMSPLMYMIPILIAVAFFTLIERKVLGYMQLRKGPNVVGPQGLLQPVADGVKLFIKEPIYPLNSSIMLFTISPIMALTLALSIWLPLPMPFPLADLNLGLLFLIAISSFMAYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSMILFSGGFNMQTFTTVQEPMYLMFSSWPLMTMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTTILFLNPAHINNTPELFTMSLISKAMLLSAGFLWIRTSYPRFRYDQLMHLLWKNFLPITLALCFWHMSMPIALSGLPPMP
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2792..3763
location: region:2792-3763:1
so has part: feature:2792-3763:1:exon

YP_054557.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2792-3763:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 260615
product: tRNA-Ile
anticodon: (pos:3793..3795,aa:Ile,seq:gat)
so part of: sequence
location: 3763..3832
location: region:3763-3832:1
so has part: feature:3763-3832:1:region

position:3832:1
position: 3832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3763-3832:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 260615
product: tRNA-Gln
anticodon: (pos:3868..3870,aa:Gln,seq:caa)
so part of: sequence
location: 3832..3902
location: region:3832-3902:1
so has part: feature:3832-3902:1:region

position:3902:1
position: 3902
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3832-3902:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 260615
product: tRNA-Met
anticodon: (pos:3932..3934,aa:Met,seq:cat)
so part of: sequence
location: 3902..3970
location: region:3902-3970:1
so has part: feature:3902-3970:1:region

position:3970:1
position: 3970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3902-3970:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 260615
gene: ND2
so part of: sequence
location: 3971..5011
location: region:3971-5011:1
so has part: feature:3971-5011:1:exon
subclass of: SO_0000010

2940634
type: Gene
SIO_000068: ncbigene

position:3971:1
position: 3971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5011:1
position: 5011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3971-5011:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 260615
gene: ND2
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPHASTIITTSLIMGPLLTISSDHWILAWMGLEISTLAITPLIAKQHHPRAIEAATKYFLTQAVASTLILASSTTNAWQTGQWDITQMSNTPSCVILTAALAMKLGLAPFHFWLPEVLQGTTTTTAMILTTWQKLAPLSLLLMTAQSMNTFLMVMLGLASIIIGGWGGLNQTQLRKIMAFSSIAHLGWMVTILTLSPKLMMLTFYTYAIMTSTMFLMIELLETNKVSVMMTSWTKLPMLNATMMLILMSLAGLPPLTGFMPKWLIIQELSKQHMYFTATTMIIMSMLSLFFYLRTSYQATITLSPNSTSSSQQWRHKPNQTHYLTPMIMLSTTLLPIVPTLLAIT
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 3971..5011
location: region:3971-5011:1
so has part: feature:3971-5011:1:exon

YP_054558.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3971-5011:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 260615
product: tRNA-Trp
anticodon: (pos:5048..5050,aa:Trp,seq:tca)
so part of: sequence
location: 5010..5086
location: region:5010-5086:1
so has part: feature:5010-5086:1:region

position:5010:1
position: 5010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5086:1
position: 5086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5010-5086:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 260615
product: tRNA-Ala
anticodon: (pos:complement(5124..5126),aa:Ala,seq:tgc)
so part of: sequence
location: complement(5088..5156)
location: region:5088-5156:-1
so has part: feature:5088-5156:-1:region

position:5088:-1
position: 5088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5156:-1
position: 5156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5088-5156:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 260615
product: tRNA-Asn
anticodon: (pos:5195..5197,aa:Asn,seq:aac)
so part of: sequence
location: 5158..5230
location: region:5158-5230:1
so has part: feature:5158-5230:1:region

position:5158:1
position: 5158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5230:1
position: 5230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5158-5230:1:region

stem_loop
type: Stem Loop
subclass of: SO_0000313
RO_0002162: 260615
note: may function as an origion for replicating the light strand
so part of: sequence
location: 5232..5256
location: region:5232-5256:1
so has part: feature:5232-5256:1:region

position:5232:1
position: 5232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5256:1
position: 5256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5232-5256:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 260615
product: tRNA-Cys
anticodon: (pos:complement(5293..5295),aa:Cys,seq:gca)
so part of: sequence
location: complement(5258..5325)
location: region:5258-5325:-1
so has part: feature:5258-5325:-1:region

position:5258:-1
position: 5258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5325:-1
position: 5325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5258-5325:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 260615
product: tRNA-Tyr
anticodon: (pos:complement(5362..5364),aa:Tyr,seq:gta)
so part of: sequence
location: complement(5326..5396)
location: region:5326-5396:-1
so has part: feature:5326-5396:-1:region

position:5326:-1
position: 5326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5396:-1
position: 5396
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5326-5396:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 260615
gene: COX1
so part of: sequence
location: 5398..6945
location: region:5398-6945:1
so has part: feature:5398-6945:1:exon
subclass of: SO_0000010

2940632
type: Gene
SIO_000068: ncbigene

position:5398:1
position: 5398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6945:1
position: 6945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5398-6945:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 260615
gene: COX1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MFLTRWFFSTNHKDIGTLYLIFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFIMIFFMVMPVMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASSGIEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTAINMKSPAMSQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPSGGGDPILYQHLFWFFGHPEVYILILPGFGMISHVVTYYAGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGMIKWDAAMLWALGFIFLFTIGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAGFTHWFPLFTGYSLHQTWAKIHFGVMFAGVNITFFPQHFLGLAGMPRRYSDYPDAYTLWNSISSIGSLISLMAVIMMMFIIWEAFSSKRKVMTVELTTTNVEWLHGCPPPYHTYEEPAHVQTQE
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5398..6945
location: region:5398-6945:1
so has part: feature:5398-6945:1:exon

YP_054559.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5398-6945:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 260615
product: tRNA-Ser
anticodon: (pos:complement(6973..6975),aa:Ser,seq:tga)
codon recognized: UCN
so part of: sequence
location: complement(6937..7007)
location: region:6937-7007:-1
so has part: feature:6937-7007:-1:region

position:6937:-1
position: 6937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7007:-1
position: 7007
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6937-7007:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 260615
product: tRNA-Asp
anticodon: (pos:7041..7043,aa:Asp,seq:gtc)
so part of: sequence
location: 7010..7079
location: region:7010-7079:1
so has part: feature:7010-7079:1:region

position:7010:1
position: 7010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7079:1
position: 7079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7010-7079:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 260615
gene: COX2
so part of: sequence
location: 7080..7769
location: region:7080-7769:1
so has part: feature:7080-7769:1:exon
subclass of: SO_0000010

2940638
type: Gene
SIO_000068: ncbigene

position:7080:1
position: 7080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7769:1
position: 7769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7080-7769:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 260615
gene: COX2
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHPFQLGFQDAMSPIMEELHHFHDHTLMIVFLISTLVLYIITLMMTTKLTYTNTMNAQEVEMIWTVLPAIVLITIALPSLRVLYLMDEINNPHLTIKAMGHQWYWTYEYTDYKNLEFDSYMIPTQNLPNGHFRLLEVDHRVVMPMESPIRMLISAEDVLHSWAIPSLGVKVDAVPGRLNQSTFIMARPGVFYGQCSEICGANHSFMPIVVESVPLKHFENWSSLMLSS
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7080..7769
location: region:7080-7769:1
so has part: feature:7080-7769:1:exon

YP_054560.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7080-7769:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 260615
product: tRNA-Lys
anticodon: (pos:7804..7806,aa:Lys,seq:ttt)
so part of: sequence
location: 7771..7843
location: region:7771-7843:1
so has part: feature:7771-7843:1:region

position:7771:1
position: 7771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7843:1
position: 7843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7771-7843:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 260615
gene: ATP8
so part of: sequence
location: 7845..8012
location: region:7845-8012:1
so has part: feature:7845-8012:1:exon
subclass of: SO_0000010

2940643
type: Gene
SIO_000068: ncbigene

position:7845:1
position: 7845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8012:1
position: 8012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7845-8012:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 260615
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNLDPWFLILSSTWLAYTMVLQPKISSYMSANSPANKDNKMTNTNPWTWPWT
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7845..8012
location: region:7845-8012:1
so has part: feature:7845-8012:1:exon

YP_054561.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7845-8012:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 260615
gene: ATP6
so part of: sequence
location: 8003..8686
location: region:8003-8686:1
so has part: feature:8003-8686:1:exon
subclass of: SO_0000010

2940635
type: Gene
SIO_000068: ncbigene

position:8003:1
position: 8003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8686:1
position: 8686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8003-8686:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 260615
gene: ATP6
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MNLTFFDQFMSPQILGMPLIILALLMPSIIFPAPNNRWLTNRLTTLQVWTINLFTKQLMLPINKTGHKWAIILTSLMAMLLMTNLLGLLPYTFTPTTQLSMNMGLAIPMWLATVLTGLRNQLTTSLGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVRLTANLTAGHLLIQLTSTAVLALLPTMTTLSLMTATILLLLTILELAVAMIQAYVFVLLLCLYLQENI
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 8003..8686
location: region:8003-8686:1
so has part: feature:8003-8686:1:exon

YP_054562.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8003-8686:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 260615
gene: COX3
so part of: sequence
location: 8686..9468
location: region:8686-9468:1
so has part: feature:8686-9468:1:exon
subclass of: SO_0000010

2940641
type: Gene
SIO_000068: ncbigene

position:9468:1
position: 9468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8686-9468:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 260615
gene: COX3
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit III
translation: MAHQTHAYHMVDPSPWPLTGAAAALFTTSGLAMWFHYNSMLLMILGLSIMLLTMFQWWRDVVREGTFQGHHTPPVQKGLRYGMILFITSEVFFFIGFFWAFYHSSLAPTPDLGGCWPPTGITPLNPFEVPLLNTAVLLASGVTITWAHHSLMEANRSQTTQALSLTILLGLYFTALQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLIVCLLRQIKYHFTSTHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8686..9468
location: region:8686-9468:1
so has part: feature:8686-9468:1:exon

YP_054563.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8686-9468:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 260615
product: tRNA-Gly
anticodon: (pos:9499..9501,aa:Gly,seq:tcc)
so part of: sequence
location: 9470..9537
location: region:9470-9537:1
so has part: feature:9470-9537:1:region

position:9470:1
position: 9470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9537:1
position: 9537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9470-9537:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 260615
gene: ND3
so part of: sequence
location: 9538..9887
location: region:9538-9887:1
so has part: feature:9538-9887:1:exon
subclass of: SO_0000010

2940639
type: Gene
SIO_000068: ncbigene

position:9538:1
position: 9538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9887:1
position: 9887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9538-9887:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 260615
gene: ND3
exception: RNA editing
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNLMISISMIYLALPTILTLLNYWFTLTKPDNEKLSPYECGFDPLKTTRPPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPHPTYTFTWAFIIMSLLTLGLLYEWIQGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: join(9538..9710,9712..9887)
location: region:9538-9887:1
so has part: feature:9538-9710:1:exon
so has part: feature:9712-9887:1:exon

YP_054564.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9538-9710:1:exon

position:9710:1
position: 9710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:9712-9887:1:exon

position:9712:1
position: 9712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 260615
product: tRNA-Arg
anticodon: (pos:9910..9912,aa:Arg,seq:caa)
so part of: sequence
location: 9888..9957
location: region:9888-9957:1
so has part: feature:9888-9957:1:region

position:9888:1
position: 9888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9957:1
position: 9957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9888-9957:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 260615
gene: ND4L
so part of: sequence
location: 9958..10257
location: region:9958-10257:1
so has part: feature:9958-10257:1:exon
subclass of: SO_0000010

2940640
type: Gene
SIO_000068: ncbigene

position:9958:1
position: 9958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10257:1
position: 10257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9958-10257:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 260615
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MITFMHFTPFCAFTISTLGFLLHQAHLIPTLLCLEGMMLSLFMALSMWSIQLEVSSFMLTPMLMLTFSACEAGMGLSLLVASSRTHGSSHLQNLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 9958..10257
location: region:9958-10257:1
so has part: feature:9958-10257:1:exon

YP_054565.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9958-10257:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 260615
gene: ND4
so part of: sequence
location: 10251..11636
location: region:10251-11636:1
so has part: feature:10251-11636:1:exon
subclass of: SO_0000010

2940642
type: Gene
SIO_000068: ncbigene

position:10251:1
position: 10251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11636:1
position: 11636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10251-11636:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 260615
gene: ND4
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKILLPTIMLLPTITLCKPKQLWLSTLTHSLMIAILSLQWFKPSMEPTMTSPIITLGVDQISAPLLILSCWLTPYPPNNGQNNMTMEPTPRKRTFIFITILLQISLILAFSTTELIMFFIAFESTLLPTLVIITRWGGQMERLNAGTYFLFYTLIGSLPLLVALLTTQTFSGTLSICTLQLSTYPSMMNPWTHTMWWLALFTAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRMTMTLAPPLKMLSYPFMMLALWGVIMTGFICLRQTDLKSLIAYSSVGHMGLVIAAALTRTEWACTGAITLMIAHGLTSSMLFCLANTNYERTNSRTLLLARNMQLLLPLMGLWWFSASLTNMALPPTINLMGELTIIVSLFNWSNTTILMTGLGTLLTAAYTLYMLITTQWGETPSYTKTIPPTHTREHLLMMLHMLPMALLMAKPELIWGSFH
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10251..11636
location: region:10251-11636:1
so has part: feature:10251-11636:1:exon

YP_054566.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10251-11636:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 260615
product: tRNA-His
anticodon: (pos:11666..11668,aa:His,seq:gtg)
so part of: sequence
location: 11637..11704
location: region:11637-11704:1
so has part: feature:11637-11704:1:region

position:11637:1
position: 11637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11704:1
position: 11704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11637-11704:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 260615
product: tRNA-Ser
anticodon: (pos:11731..11733,aa:Ser,seq:gct)
codon recognized: AGY
so part of: sequence
location: 11705..11770
location: region:11705-11770:1
so has part: feature:11705-11770:1:region

position:11705:1
position: 11705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11770:1
position: 11770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11705-11770:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 260615
product: tRNA-Leu
anticodon: (pos:11802..11804,aa:Leu,seq:tag)
codon recognized: CUN
so part of: sequence
location: 11770..11840
location: region:11770-11840:1
so has part: feature:11770-11840:1:region

position:11840:1
position: 11840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11770-11840:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 260615
gene: ND5
so part of: sequence
location: 11841..13682
location: region:11841-13682:1
so has part: feature:11841-13682:1:exon
subclass of: SO_0000010

2940636
type: Gene
SIO_000068: ncbigene

position:11841:1
position: 11841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13682:1
position: 13682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11841-13682:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 260615
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MTSLMMNSTLLLTLLMLTLPLMMPMHPIKEWLVTKTKTTVKTAFFTSLIPLIIFIHLDIESIITNLHWLNMFTFNINMSFKFDQYSIMFVPIALYVTWSILEFAHWYMSADPYITKFFKYLLTFLVVMMILVTANNMLQLFIGWEGVGIMSFLLIGWWRGRTEANLSALQAILYNRTGDIGLILSMSWLAMNMNTWELQQIFANPNPIPLLPLLGLILAATGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRIHPILTTSNLALSICLCLGATTTLFTAFCALPKWHKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHISMHAFFKAMLFLCSGSIIHNLNDEQDIRKMGGLHKPLPITSSCLTIGNMALTGMPFMTGFYSKDIIIEVMNTSYLNAWALLLTLIATSFTTIYSLRIMTFVQTGQPRYPSTMLLNENNPTVINPITRLAMGSIIAGLIISLNTMPLKTPPTTMPTYMKTAALTMTILGLLVALELISMTHKMSTKPSNIHNFSNSLAYFNTLIHRLFPTINLKFSQNTATHLIDLSWYENIGPKGLVKSQITPITLISSQKGLIKVYMTSFILSIILLFIMTLIARSTPRDSPRF
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11841..13682
location: region:11841-13682:1
so has part: feature:11841-13682:1:exon

YP_054567.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11841-13682:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 260615
gene: ND6
so part of: sequence
location: complement(13684..14154)
location: region:13684-14154:-1
so has part: feature:13684-14154:-1:exon
subclass of: SO_0000010

2940633
type: Gene
SIO_000068: ncbigene

position:13684:-1
position: 13684
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14154:-1
position: 14154
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13684-14154:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 260615
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MMYFMFLFGFSLYWMMGVSCNPSSLLWGVSLIFGALIWSGVLLYGYWLFLLIHLRWKSLILLLGEVKVEWMAEPYPVAWGSQGGVVYVVSYVLVVLVYGMMCYWLWSMEGYGSVTVDAGGLFVVRLDFSGVAGFYGVENGLLLMLVEGYCWRCLLC
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13684..14154)
location: region:13684-14154:-1
so has part: feature:13684-14154:-1:exon

YP_054568.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13684-14154:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 260615
product: tRNA-Glu
anticodon: (pos:complement(14185..14187),aa:Glu,seq:ttc)
so part of: sequence
location: complement(14149..14216)
location: region:14149-14216:-1
so has part: feature:14149-14216:-1:region

position:14149:-1
position: 14149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14216:-1
position: 14216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14149-14216:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 260615
gene: CYTB
so part of: sequence
location: 14218..15360
location: region:14218-15360:1
so has part: feature:14218-15360:1:exon
subclass of: SO_0000010

2940631
type: Gene
SIO_000068: ncbigene

position:14218:1
position: 14218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15360:1
position: 15360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14218-15360:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 260615
gene: CYTB
codon start: 1
transl table: 2
product: cytochrome b
translation: MYDTNLRKTHPMKIINNSFIDLPSPSNISAWWNFGSLLGTCLILQITTGIFLAMHYSPDISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLFLTMATAFVGYVLPWGQMSFWGATVITNLLSATPYIGNTLVQWIWGGFSVDNATLTRFFTFHFLLPFAIAGLAAVHLLFLHETGSNNPTGLNSNADKIPFHPYFSYKDLLGLILMLTLLLILALFFPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALMASILVLFMMPILHTSKQRTASFRPLTQTLFWCLTADLLVLTWIGGQPVENPFITIGQAASILYFMILLTLIPLIGLIENKMLNQ
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14218..15360
location: region:14218-15360:1
so has part: feature:14218-15360:1:exon

YP_054569.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14218-15360:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 260615
product: tRNA-Thr
anticodon: (pos:15396..15398,aa:Thr,seq:tgt)
so part of: sequence
location: 15362..15434
location: region:15362-15434:1
so has part: feature:15362-15434:1:region

position:15362:1
position: 15362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15434:1
position: 15434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15362-15434:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 260615
product: tRNA-Pro
anticodon: (pos:complement(15472..15474),aa:Pro,seq:tgg)
so part of: sequence
location: complement(15436..15504)
location: region:15436-15504:-1
so has part: feature:15436-15504:-1:region

position:15436:-1
position: 15436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15504:-1
position: 15504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15436-15504:-1:region

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 260615
note: control region
so part of: sequence
location: 15505..16576
location: region:15505-16576:1
so has part: feature:15505-16576:1:region

position:15505:1
position: 15505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15505-16576:1:region