Pukyongiella litopenaei strain SH-1 plasmid p5, complete sequence.
type: Entry
definition: Pukyongiella litopenaei strain SH-1 plasmid p5, complete sequence.
sequence version: NZ_CP043623.1
sequence date: 2023-04-26
sequence: sequence
division: CON
label: NZ_CP043623.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN08643256
keyword: RefSeq
source: Pukyongiella litopenaei
organism: Pukyongiella litopenaei
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Pukyongiella.
reference: 1
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP043623.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 06-MAR-2018\nAssembly Method :: HGAP v. 3.0\nAssembly Name :: SH-1 chromosome and plasmids\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 218.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/26/2023 06:03:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,189\nCDSs (total) :: 4,141\nGenes (coding) :: 4,049\nCDSs (with protein) :: 4,049\nGenes (RNA) :: 48\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 42\nncRNAs :: 3\nPseudo Genes (total) :: 92\nCDSs (without protein) :: 92\nPseudo Genes (ambiguous residues) :: 0 of 92\nPseudo Genes (frameshifted) :: 22 of 92\nPseudo Genes (incomplete) :: 75 of 92\nPseudo Genes (internal stop) :: 14 of 92\nPseudo Genes (multiple problems) :: 17 of 92\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 16620
topology: linear
so has quality: SO_0000987
location: 1..16620
location: region:1-16620:1
RO_0002162: 2605946

NZ_CP043623
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN08643256
type: BioSample
SIO_000068: biosample

1
title: Novel bacterium SH-1
author: Kim, Y.-S.
author: Kim, K.-H.
journal: Unpublished

2
title: Direct Submission
author: Kim, Y.-S.
author: Kim, K.-H.
journal: Submitted (11-SEP-2019) Microbiology, Pukyong National University, Yongso-Ro, Busan KS012, South Korea
comments: Annotation update by database at the request of the submitter due to the addition of plasmids to the assembly

3
title: Direct Submission
author: Kim, Y.-S.
author: Kim, K.-H.
journal: Submitted (29-AUG-2019) Microbiology, Pukyong National University, Yongso-Ro, Busan KS012, South Korea

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition
type: FuzzyPosition

position:16620:1
position: 16620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition
type: FuzzyPosition

feature:1-16620:1:source
so part of: sequence
organism: Pukyongiella litopenaei
mol type: genomic DNA
strain: SH-1
isolation source: intestine content
host: Penaeus vannamei (shrimp)
culture collection: KCTC:62276
type material: type strain of Pukyongiella litopenaei
plasmid: p5
country: South Korea
collection date: 2017-05-19

2605946
type: Taxonomy
SIO_000068: taxonomy

C6Y53_RS20785
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20785
old locus tag: C6Y53_20880
pseudo: true
so part of: sequence
location: <1..239
location: region:1-239:1
so has part: feature:1-239:1:exon
subclass of: SO_0000010

position:239:1
position: 239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-239:1:exon

C6Y53_RS20785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20785
old locus tag: C6Y53_20880
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011144108.1
note: with OppABCD is involved in the transport of oligopeptides; OppF and OppD are ATP-binding proteins; incomplete; too short partial abutting assembly gap; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 3
transl table: 11
product: oligopeptide ABC transporter ATP-binding protein OppF
SIO_010081: C6Y53_RS20785
subclass of: SO_0000673
so part of: C6Y53_RS20785
location: <1..239
location: region:1-239:1
so has part: feature:1-239:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1-239:1:exon

C6Y53_RS20790
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
gene: mobQ
locus tag: C6Y53_RS20790
old locus tag: C6Y53_20885
so part of: sequence
location: complement(448..1755)
location: region:448-1755:-1
so has part: feature:448-1755:-1:exon
subclass of: SO_0000010

position:448:-1
position: 448
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1755:-1
position: 1755
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:448-1755:-1:exon

C6Y53_RS20790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
gene: mobQ
locus tag: C6Y53_RS20790
old locus tag: C6Y53_20885
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011655527.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobQ family relaxase
translation: MASYHLSVKTVKRSAGRTATAAAAYRAGERLSCAREGRVHDYTRKQGIEESFILAPADAPGWAQDRAGLWNAAEARETRRNSVTAREWELALPAELSAEGRAELARGFAQELVSRYGIAADVAIHAPHRDGDQRNHHAHVLTTTRVLGSEGLTDKTRILDAARTGGAEIAEMRGLWAQMQNAALERAEMEARVDHRSLEDQREAALSRGDELAAMALDRDPEIKLGPAASAMERKAMREAERDGVAYEPVTERGGQVHGVRQQRSLMADLLERMGRAREAYAQAREAEAGRLSAATEAARALFSGAGARDFAASFTRAYQDREAARQRALEEERAQAREAERVAALEAARGQFIEQVVVAWQDSREIANPDVAKQRQRQLVGEVEKAAERFGCTFDDIAGPANARANEIRDQRTREAEIELDRFRHRDRSDGLGL
SIO_010081: C6Y53_RS20790
subclass of: SO_0000673
so part of: C6Y53_RS20790
location: complement(448..1755)
location: region:448-1755:-1
so has part: feature:448-1755:-1:exon

WP_149615826.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:448-1755:-1:exon

C6Y53_RS20795
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20795
old locus tag: C6Y53_20890
so part of: sequence
location: 2487..2840
location: region:2487-2840:1
so has part: feature:2487-2840:1:exon
subclass of: SO_0000010

position:2487:1
position: 2487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2840:1
position: 2840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2487-2840:1:exon

C6Y53_RS20795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20795
old locus tag: C6Y53_20890
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009503752.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: mobilization protein
translation: MAETALEKLERQYEQARARLQAARARKAAKERKLDARRKIILGGALIERAGRDPEAARLMRALVTGLSRAQDRKAFENWTPPAPAPDPGAAETTGAPDSEADVPIARDKGGPAEKPS
SIO_010081: C6Y53_RS20795
subclass of: SO_0000673
so part of: C6Y53_RS20795
location: 2487..2840
location: region:2487-2840:1
so has part: feature:2487-2840:1:exon

WP_244615049.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2487-2840:1:exon

C6Y53_RS20800
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20800
old locus tag: C6Y53_20895
so part of: sequence
location: 2837..3421
location: region:2837-3421:1
so has part: feature:2837-3421:1:exon
subclass of: SO_0000010

position:2837:1
position: 2837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3421:1
position: 3421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2837-3421:1:exon

C6Y53_RS20800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20800
old locus tag: C6Y53_20895
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSRETDSEPETWDSLRDVFHREIAGNGGDSAAAFIAILDELDARMGVADDRIERNIEIVDALIGWLKLTQEQLKGLPNQVRRSTAEGVAQLGATTERAATDGARNGARASEQGLEALRAAVSAAEASRRKLARVALIGLPVAFAGALLAGVLFASFAIPTLPRSWQWPCTLIGSEFRTSVDPDSPTTFCVIVRK
SIO_010081: C6Y53_RS20800
subclass of: SO_0000673
so part of: C6Y53_RS20800
location: 2837..3421
location: region:2837-3421:1
so has part: feature:2837-3421:1:exon

WP_149615827.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2837-3421:1:exon

C6Y53_RS20805
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20805
old locus tag: C6Y53_20900
so part of: sequence
location: 3717..4748
location: region:3717-4748:1
so has part: feature:3717-4748:1:exon
subclass of: SO_0000010

position:3717:1
position: 3717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4748:1
position: 4748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3717-4748:1:exon

C6Y53_RS20805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20805
old locus tag: C6Y53_20900
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010505209.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiator protein A
translation: MVTENTNLAPLLPDRHPQHDLFICDVADAVLKDVMQHMEHPFYSLSKKPETSVKRYKNGEHWLEITPSVKGLATIYDKDILIFCISQLMAALKRGEQVSPRVRINSRELLIFTNRGTSGREYLSLLDALDRLEGTRIRTNIVTGDEEQIDGFGLIDASSIRRKHGMDGRLLWCEVKLSDWVFNAIRNEEVLTLHRDYFRLRKPVERRVYELARKHCGQQKTWKITLAKLLLKSGSQSPEKRFRQMIKELAKHDHLPDYEVDFDEAADMVIFTNRGSMAPAPLVEGRVPPLKSETYEYAREVAPGWDIYHLEREWRDWIIEPPRDTDRAFIGFCRKWFEKRGRP
SIO_010081: C6Y53_RS20805
subclass of: SO_0000673
so part of: C6Y53_RS20805
location: 3717..4748
location: region:3717-4748:1
so has part: feature:3717-4748:1:exon

WP_149615828.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3717-4748:1:exon

C6Y53_RS20810
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20810
old locus tag: C6Y53_20905
so part of: sequence
location: 4861..5529
location: region:4861-5529:1
so has part: feature:4861-5529:1:exon
subclass of: SO_0000010

position:4861:1
position: 4861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5529:1
position: 5529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4861-5529:1:exon

C6Y53_RS20810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20810
old locus tag: C6Y53_20905
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011655537.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MPVIVMASPKGGVGKSTCAVLLASEFARMGAEVTVLDCDPNKSLTRWASHGTPEGVTLKGDIGRSEIVPTIRSADGDGRIVIVDLEGVASQLVSRAISQADLVIVPMQPTALDAEIGSEALALVREEEEALGRSIRHAVVLTKTSAAVKSRVQKELEQQLSGARIDVIEPSLVARAAFSELFAYGGDLTAMMNDPDMMTGGKVDKALQNAQSFTEAVYERLK
SIO_010081: C6Y53_RS20810
subclass of: SO_0000673
so part of: C6Y53_RS20810
location: 4861..5529
location: region:4861-5529:1
so has part: feature:4861-5529:1:exon

WP_149615829.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4861-5529:1:exon

C6Y53_RS20820
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20820
old locus tag: C6Y53_20915
so part of: sequence
location: 5861..6115
location: region:5861-6115:1
so has part: feature:5861-6115:1:exon
subclass of: SO_0000010

position:5861:1
position: 5861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6115:1
position: 6115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5861-6115:1:exon

C6Y53_RS20820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20820
old locus tag: C6Y53_20915
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012556062.1
GO function: GO:0003729 - mRNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system HicA family toxin
translation: MNSKHRKTLAAVFTDPVSGTIEWSAVERLLVAAGAQVIEGRGSRVRFEKDGEVETFHRPHPAKEAKRYQVRAARAFLERIGVTP
SIO_010081: C6Y53_RS20820
subclass of: SO_0000673
so part of: C6Y53_RS20820
location: 5861..6115
location: region:5861-6115:1
so has part: feature:5861-6115:1:exon

WP_073145958.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5861-6115:1:exon

C6Y53_RS20825
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20825
old locus tag: C6Y53_20920
so part of: sequence
location: 6112..6444
location: region:6112-6444:1
so has part: feature:6112-6444:1:exon
subclass of: SO_0000010

position:6112:1
position: 6112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6444:1
position: 6444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6112-6444:1:exon

C6Y53_RS20825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20825
old locus tag: C6Y53_20920
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007427348.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system HicB family antitoxin
translation: MTNSMTYKGYSARIEYDDEDGIFTGRIAGIRDGIGFHADTVEGLRDAFHEAVEDYIETCTKVGKEPQKAFSGQVMFRVDPEVHRKAALAAELSGKSLNQWAEEVLDRATR
SIO_010081: C6Y53_RS20825
subclass of: SO_0000673
so part of: C6Y53_RS20825
location: 6112..6444
location: region:6112-6444:1
so has part: feature:6112-6444:1:exon

WP_149615831.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6112-6444:1:exon

C6Y53_RS20830
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20830
old locus tag: C6Y53_20925
so part of: sequence
location: 6526..6801
location: region:6526-6801:1
so has part: feature:6526-6801:1:exon
subclass of: SO_0000010

position:6526:1
position: 6526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6801:1
position: 6801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6526-6801:1:exon

C6Y53_RS20830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20830
old locus tag: C6Y53_20925
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009381671.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transcriptional regulator
translation: MQTFGAELLQSLAEAVAHAKGQGPATIHHPIDPQQVRKKTALSQEQVALLMGMSLSDYREWEQDPHNISGPAAILLRVIEKDPDAVRRALE
SIO_010081: C6Y53_RS20830
subclass of: SO_0000673
so part of: C6Y53_RS20830
location: 6526..6801
location: region:6526-6801:1
so has part: feature:6526-6801:1:exon

WP_149615832.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6526-6801:1:exon

C6Y53_RS20835
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20835
old locus tag: C6Y53_20930
so part of: sequence
location: complement(6826..7413)
location: region:6826-7413:-1
so has part: feature:6826-7413:-1:exon
subclass of: SO_0000010

position:6826:-1
position: 6826
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7413:-1
position: 7413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6826-7413:-1:exon

C6Y53_RS20835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20835
old locus tag: C6Y53_20930
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006871427.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MLRRQIVKSDDDHAADAHERGRDYLGPVQIDRLLAAARKGRHGIRDHLLILMMFRHGLRVSEAIALRRADADLAQARLWVARLKNGLSVEHPVAGDELRALRRWLAARDDALPWLFVSERRQPLTRQAVNYIIGAAAKRAGIGPVHPHMLRHSCGFALANRGYDLRLIQDYLGHRDPRHTAHYTRTAASRFDGLW
SIO_010081: C6Y53_RS20835
subclass of: SO_0000673
so part of: C6Y53_RS20835
location: complement(6826..7413)
location: region:6826-7413:-1
so has part: feature:6826-7413:-1:exon

WP_149615833.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6826-7413:-1:exon

C6Y53_RS20840
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20840
old locus tag: C6Y53_20935
so part of: sequence
location: complement(7667..8293)
location: region:7667-8293:-1
so has part: feature:7667-8293:-1:exon
subclass of: SO_0000010

position:7667:-1
position: 7667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8293:-1
position: 8293
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7667-8293:-1:exon

C6Y53_RS20840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20840
old locus tag: C6Y53_20935
inference: COORDINATES: protein motif:HMM:NF019498.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cupin domain-containing protein
translation: MARNDDAEDKDSVPHAGDPSASVGSRIKHLRQKKKLSIQTLSRLAGVSAGMLSQVERDLANPSLKLLTKIQVALGTSAGSLFPGENDVAEGVPDPIFVRRKGKRPFCELDYLTKELLSDGAAQRLELMLLHLPPNGSSGPTPLTSPAEKGGLVLEGTISMSVDGVEASLTEGDSFTFDGRLPHAFRNIGGAPAQILWVVSNFPMERHL
SIO_010081: C6Y53_RS20840
subclass of: SO_0000673
so part of: C6Y53_RS20840
location: complement(7667..8293)
location: region:7667-8293:-1
so has part: feature:7667-8293:-1:exon

WP_149615834.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7667-8293:-1:exon

C6Y53_RS20845
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20845
old locus tag: C6Y53_20940
so part of: sequence
location: 8564..9484
location: region:8564-9484:1
so has part: feature:8564-9484:1:exon
subclass of: SO_0000010

position:8564:1
position: 8564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9484:1
position: 9484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8564-9484:1:exon

C6Y53_RS20845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20845
old locus tag: C6Y53_20940
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013177445.1
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter permease
translation: MTQYIFRRFAQSLIVLLGALLISFVILRIVPGDPAMMMLSDLATPEEIERMRSSLGVDKSIWTQLAIFAKQIATGDFGMSYRNQVPALGLVLSYLPATFELAGAALVLTVTISVPLGAYAAVRKGSWVDNMLSGFALVGQSVPVFWLGIMLILVFSVHFRWLPTSGRGDLSHLVLPAITLAAAQVALVSRIMRSSMLEVMRQDYIRTARAKGLSEWSVIFGHALRNAFAPVVTVLGLQIGTLLGGAIITETVFAWPGAGNLLVNSIGARDYPVVQAMVVISALVFVITNLIVDIIYVLLDPRVSYG
SIO_010081: C6Y53_RS20845
subclass of: SO_0000673
so part of: C6Y53_RS20845
location: 8564..9484
location: region:8564-9484:1
so has part: feature:8564-9484:1:exon

WP_149615835.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8564-9484:1:exon

C6Y53_RS20850
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20850
old locus tag: C6Y53_20945
so part of: sequence
location: 9495..10496
location: region:9495-10496:1
so has part: feature:9495-10496:1:exon
subclass of: SO_0000010

position:9495:1
position: 9495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10496:1
position: 10496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9495-10496:1:exon

C6Y53_RS20850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20850
old locus tag: C6Y53_20945
inference: COORDINATES: protein motif:HMM:NF012738.2
GO function: GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter permease
translation: MTFLKILHARPMFAFATVVLTALIVTALLAPWLTQGSVEAQSLSARLKPPGWVDASGHMYLAGTDHLGRDVLARLIYGSRLSLAVGTLAVAFGGAVGLVLGLISGYYGGKVDAVIMRFTDMQLAFPFMLLALALVTILGPSVINVILVLAITSWIVYAKVVRGDVLQLRNREFIEAARVLGIPDRRIIFRHILPNIFSSFLVVASFQVAALIIAESSLSFLGLGVPSNIPTWGTMLADGREYVRDAWWLSVFPGVAIMLAALSFNLLGDGLRDLLDPTMRASSPTRKRRIRFFSPRNGPPATPDPHTAVKEIGPLGNESNSLEIKNVDQSRKC
SIO_010081: C6Y53_RS20850
subclass of: SO_0000673
so part of: C6Y53_RS20850
location: 9495..10496
location: region:9495-10496:1
so has part: feature:9495-10496:1:exon

WP_244615050.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9495-10496:1:exon

C6Y53_RS20855
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20855
old locus tag: C6Y53_20950
so part of: sequence
location: 10471..11454
location: region:10471-11454:1
so has part: feature:10471-11454:1:exon
subclass of: SO_0000010

position:10471:1
position: 10471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11454:1
position: 11454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10471-11454:1:exon

C6Y53_RS20855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20855
old locus tag: C6Y53_20950
inference: COORDINATES: protein motif:HMM:NF016817.2
GO function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: succinylglutamate desuccinylase/aspartoacylase family protein
translation: MSIKVGNVEAKAGKLERGELRVGSMADGSPIELPVFIACGRKDGPIVWLEGCIHGEEYGGAASIIQFMRNLDLSTLSGTIIGIPVANPASFNFRSRVSSIDGQNLNRIFPGDLAGSHSVQLAAVIGEHLEKHADFLIDLHSGGIGAEVPFYVIYKDDGTQNATRSKDLAKRVGVETIWRVPEAQGMGGTVTAEALRHNIPSVTVECGGGTFTQKHLDDYLVSINGFLQATGNLSGNAPVRDGYTIISGGSFIHNREGGLFVPECKVGDILPKGRMIGRLINLHGETVEEIPNPYEDSYIAALRCNYFPTHAGEICAEAIPVEAREGL
SIO_010081: C6Y53_RS20855
subclass of: SO_0000673
so part of: C6Y53_RS20855
location: 10471..11454
location: region:10471-11454:1
so has part: feature:10471-11454:1:exon

WP_211299579.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10471-11454:1:exon

C6Y53_RS20860
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20860
old locus tag: C6Y53_20955
so part of: sequence
location: 11522..13051
location: region:11522-13051:1
so has part: feature:11522-13051:1:exon
subclass of: SO_0000010

position:11522:1
position: 11522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13051:1
position: 13051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11522-13051:1:exon

C6Y53_RS20860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20860
old locus tag: C6Y53_20955
inference: COORDINATES: protein motif:HMM:NF012706.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter substrate-binding protein
translation: MQMKPLRTLTLASSLVLSTALMGTALVGSAMPAQAFELTVASGADPTTLDPRKTWVAQGYTMNAHVFEPIAFRTEKDGNVVLTPVLAESWEQISPTELEVKLREDITFHNGEPFNAEAVAYTISSIQAEDFVTNLKLWVRDITEVEVKSEYVLILRTTSPTRGLVNVLAQVPIVAPEAAKSPDFEKNPIGTGPYEIVSYVPSGQVVLERNPDYWGEPGKADKITFRIMPETSTRLAALESGEAQIAENLPPDKLSSLRENEEIDVVFTPTLRVDYMVLNHNNRLIQNKKFREALSLAIDRKGIVDNLLAGTTKVANSISPPGTIGYDASLPAYGYDPVRARELLEEVGYNGEVIKVGGPIGRYSMDKQVTEAIGGMLQAVGINVTVETLAFSSYIPKYYEPAYDLAFIGQTDFTVSPHKHWGAIFYSPTARHGYANDEMDRLIATATVELDDEKAAALFREGQALQRKEFGGALPLYYEPQLIGISAKYEGFVPRLDEYIIVSGVQPKP
SIO_010081: C6Y53_RS20860
subclass of: SO_0000673
so part of: C6Y53_RS20860
location: 11522..13051
location: region:11522-13051:1
so has part: feature:11522-13051:1:exon

WP_149615837.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11522-13051:1:exon

C6Y53_RS20865
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20865
old locus tag: C6Y53_20960
so part of: sequence
location: 13127..14287
location: region:13127-14287:1
so has part: feature:13127-14287:1:exon
subclass of: SO_0000010

position:13127:1
position: 13127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14287:1
position: 14287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13127-14287:1:exon

C6Y53_RS20865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20865
old locus tag: C6Y53_20960
inference: COORDINATES: protein motif:HMM:NF014081.2
GO function: GO:0016787 - hydrolase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: amidohydrolase family protein
translation: MTKYVICGTLIDATGAEPAKGKAIVVDDDKIKSIIEAKEVPSGAEVIDLSDRTVMPGLIDSHEHLIVDIGDEEAQCSETVPYLAMKAMWNAKAILRAGITTMRDVGERYFIDVDAKRCIEAGLIQGPRLLISGHPIIRTGGHAHFLGREADGVGDMRKAVREQLKRGVDLIKIMASGGMSTKGSLPDSQEFSDEEIIACVDEARRNGRKVAAHLHGGPALKVCIDAGVHSVEHGILYTEEDVKLVAGSDTWLVFTTGVGQAAMESPNAPPHFVAKASAAQAKSLNVRKWAKQYGAKIAVGTDTYHGRMDVEAKALVEAGWTPMEAIQICTIKGAELCGLEDKVGTLETGKLADIIALDGDPIADLGNLRNVTFVMKGGKIEFDEIA
SIO_010081: C6Y53_RS20865
subclass of: SO_0000673
so part of: C6Y53_RS20865
location: 13127..14287
location: region:13127-14287:1
so has part: feature:13127-14287:1:exon

WP_149615838.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13127-14287:1:exon

C6Y53_RS20870
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20870
old locus tag: C6Y53_20965
so part of: sequence
location: 14284..15276
location: region:14284-15276:1
so has part: feature:14284-15276:1:exon
subclass of: SO_0000010

position:14284:1
position: 14284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15276:1
position: 15276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14284-15276:1:exon

C6Y53_RS20870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20870
old locus tag: C6Y53_20965
inference: COORDINATES: protein motif:HMM:NF016817.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: succinylglutamate desuccinylase/aspartoacylase family protein
translation: MMDDQSETTFEIGTARADPGETSTGDLNVAVGMDSRTVTIPICIVNGARPGPVVLVEGGLHGIEIGTVEVCRQLKDKVDPTDMAGTLVLAPQVNPWAFLASSRFTPQDSLDMNRVFPGAPGGSLTHQVARVVSRELLDRADVVIDCHSCNPPSLLFTIIGEEGDAETRRQSIEIAKAFGYPVVLANTAYSGTLSGYCLEQGKPTITPEFLFSRRFDDTSIQTGVTGVLNVLRHLGMLDGDVQPIKVEGGFDEVRTYRSIAATSGGFCFFEQECGAVVSRGDTLAVLCDYWGCETERITAPEDGIVIAFPLQGNQAAGSGDKIAYLAYRVE
SIO_010081: C6Y53_RS20870
subclass of: SO_0000673
so part of: C6Y53_RS20870
location: 14284..15276
location: region:14284-15276:1
so has part: feature:14284-15276:1:exon

WP_149615839.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14284-15276:1:exon

C6Y53_RS20875
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20875
old locus tag: C6Y53_20970
so part of: sequence
location: 15280..16293
location: region:15280-16293:1
so has part: feature:15280-16293:1:exon
subclass of: SO_0000010

position:15280:1
position: 15280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16293:1
position: 16293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15280-16293:1:exon

C6Y53_RS20875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20875
old locus tag: C6Y53_20970
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012870874.1
GO function: GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: MSHLLEVRNLQTHFHTPGGGLVRAVNGVSFCLDRGETLGIVGESGSGKSVTSLSIMRLLPRPAGFIAGGEIKLEGRDLLAMSEREMRRVRSKDIAMIFQDPMTSLNPVVPVGRQITESLKLHMDMNSRQAHNHAIELMEMVGIPEPHRRIDEYPHQFSGGMRQRVMIAIALTCNPRVLIADEPTTALDVTIQAQILELIKRLQQELDMAVIIITHDLGVVAGVADRVNVMYGGRMVESGPTDEIFERPRMPYTIGLLRSVPRVDDDRKQRLVPIRGTPPDMDKPIPGCAFAPRCDFSKPVCREEAPALRCVAPSHKTACHFDVSLDSPTENVTREVG
SIO_010081: C6Y53_RS20875
subclass of: SO_0000673
so part of: C6Y53_RS20875
location: 15280..16293
location: region:15280-16293:1
so has part: feature:15280-16293:1:exon

WP_149615840.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15280-16293:1:exon

C6Y53_RS20880
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20880
old locus tag: C6Y53_20975
so part of: sequence
location: 16328..>16620
location: region:16328-16620:1
so has part: feature:16328-16620:1:exon
subclass of: SO_0000010

position:16328:1
position: 16328
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16328-16620:1:exon

C6Y53_RS20880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20880
old locus tag: C6Y53_20975
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014432391.1
GO function: GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: MQPLVQVSNLKMHFPVRRGIVVKRQVGSVKAVDGISFDIDEGETLGLVGESGCGKSTAARAILQVYSPTAGSVRFRSKDLVGLGKKQMAPYRRKLQMV
SIO_010081: C6Y53_RS20880
subclass of: SO_0000673
so part of: C6Y53_RS20880
location: 16328..>16620
location: region:16328-16620:1
so has part: feature:16328-16620:1:exon

WP_149615841.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16328-16620:1:exon