Pukyongiella litopenaei strain SH-1 plasmid p4, complete sequence.
type: Entry
definition: Pukyongiella litopenaei strain SH-1 plasmid p4, complete sequence.
sequence version: NZ_CP043622.1
sequence date: 2023-04-26
sequence: sequence
division: CON
label: NZ_CP043622.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN08643256
keyword: RefSeq
source: Pukyongiella litopenaei
organism: Pukyongiella litopenaei
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Pukyongiella.
reference: 1
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP043622.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 06-MAR-2018\nAssembly Method :: HGAP v. 3.0\nAssembly Name :: SH-1 chromosome and plasmids\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 218.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/26/2023 06:03:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,189\nCDSs (total) :: 4,141\nGenes (coding) :: 4,049\nCDSs (with protein) :: 4,049\nGenes (RNA) :: 48\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 42\nncRNAs :: 3\nPseudo Genes (total) :: 92\nCDSs (without protein) :: 92\nPseudo Genes (ambiguous residues) :: 0 of 92\nPseudo Genes (frameshifted) :: 22 of 92\nPseudo Genes (incomplete) :: 75 of 92\nPseudo Genes (internal stop) :: 14 of 92\nPseudo Genes (multiple problems) :: 17 of 92\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 41166
topology: circular
so has quality: SO_0000988
location: 1..41166
location: region:1-41166:1
RO_0002162: 2605946

NZ_CP043622
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN08643256
type: BioSample
SIO_000068: biosample

1
title: Novel bacterium SH-1
author: Kim, Y.-S.
author: Kim, K.-H.
journal: Unpublished

2
title: Direct Submission
author: Kim, Y.-S.
author: Kim, K.-H.
journal: Submitted (11-SEP-2019) Microbiology, Pukyong National University, Yongso-Ro, Busan KS012, South Korea
comments: Annotation update by database at the request of the submitter due to the addition of plasmids to the assembly

3
title: Direct Submission
author: Kim, Y.-S.
author: Kim, K.-H.
journal: Submitted (29-AUG-2019) Microbiology, Pukyong National University, Yongso-Ro, Busan KS012, South Korea

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41166:1
position: 41166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-41166:1:source
so part of: sequence
organism: Pukyongiella litopenaei
mol type: genomic DNA
strain: SH-1
isolation source: intestine content
host: Penaeus vannamei (shrimp)
culture collection: KCTC:62276
type material: type strain of Pukyongiella litopenaei
plasmid: p4
country: South Korea
collection date: 2017-05-19

2605946
type: Taxonomy
SIO_000068: taxonomy

C6Y53_RS20595
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
gene: istA
locus tag: C6Y53_RS20595
old locus tag: C6Y53_20690
so part of: sequence
location: join(40507..41166,1..840)
location: region:1-41166:1
so has part: feature:40507-41166:1:exon
so has part: feature:1-840:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:40507-41166:1:exon

position:40507:1
position: 40507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-840:1:exon

position:840:1
position: 840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

C6Y53_RS20595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
gene: istA
locus tag: C6Y53_RS20595
old locus tag: C6Y53_20690
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014236596.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS21 family transposase
translation: MESVLKIRRWVLVEGRSIRSVARATGLSRNTIKKYLKDESPPSYQRQAPPVRHKLCNGFDLRLQELFDQDQKRPRRERRTAQKLYEQLVVEGYTGSYSPVQRFVRDLKRAGAGLGEAFIPLHFAAGDALQFDWSEERVVLGGIEQKVKVAHFRLCHSRKPFVVAYPGEAQEMVLDAFVQALSFYGGVPRRVIIDNPKTMVTYVSRSKDRIFHPRFLALMNHYVMEPVACTPAAGWEKGQVENQVQFLRGRLFVPKPAFDDLDALNDWLRLRCEELANRPHPEQSDRTIAELFEDERAELRPLGRAFDGYVEKTVRVRSTCLVQYASNRYSVPSRFAGQHVSLRAYAGRIVLVSGQDVIAEHKRRFTRNVSYFEPWHYVPLLDRKPGALRDGAPFVDWQLPEAMHRIREHYMAGKGGDREFVDLLLLAQDHGIEVVETACELAVEQNTLRLPAIINLINQLVEPVITPLSDAYTYPQLTLRPEADCKRYETLCSAEEAAA
SIO_010081: C6Y53_RS20595
subclass of: SO_0000673
so part of: C6Y53_RS20595
location: join(40507..41166,1..840)
location: region:1-41166:1
so has part: feature:40507-41166:1:exon
so has part: feature:1-840:1:exon

WP_149615794.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:40507-41166:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-840:1:exon

C6Y53_RS20600
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
gene: istB
locus tag: C6Y53_RS20600
old locus tag: C6Y53_20695
pseudo: true
so part of: sequence
location: 837..>1520
location: region:837-1520:1
so has part: feature:837-1520:1:exon
subclass of: SO_0000010

position:837:1
position: 837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1520:1
position: 1520
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:837-1520:1:exon

C6Y53_RS20600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
gene: istB
locus tag: C6Y53_RS20600
old locus tag: C6Y53_20695
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014881795.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS21-like element helper ATPase IstB
SIO_010081: C6Y53_RS20600
subclass of: SO_0000673
so part of: C6Y53_RS20600
location: 837..>1520
location: region:837-1520:1
so has part: feature:837-1520:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:837-1520:1:exon

C6Y53_RS20605
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20605
old locus tag: C6Y53_20700
pseudo: true
so part of: sequence
location: complement(1847..>1999)
location: region:1847-1999:-1
so has part: feature:1847-1999:-1:exon
subclass of: SO_0000010

position:1847:-1
position: 1847
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1999:-1
position: 1999
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1847-1999:-1:exon

C6Y53_RS20605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20605
old locus tag: C6Y53_20700
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009804242.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
SIO_010081: C6Y53_RS20605
subclass of: SO_0000673
so part of: C6Y53_RS20605
location: complement(1847..>1999)
location: region:1847-1999:-1
so has part: feature:1847-1999:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1847-1999:-1:exon

C6Y53_RS20610
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20610
old locus tag: C6Y53_20705
so part of: sequence
location: complement(2580..3470)
location: region:2580-3470:-1
so has part: feature:2580-3470:-1:exon
subclass of: SO_0000010

position:2580:-1
position: 2580
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3470:-1
position: 3470
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2580-3470:-1:exon

C6Y53_RS20610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20610
old locus tag: C6Y53_20705
inference: COORDINATES: protein motif:HMM:NF013235.2
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MSEAAKDTTPLRVLDLTPRRDQASKPAELIQITGHQALTLNARRSITILWHNAHMQGVEEGKDYTIEIDDLKPDDHKGYEMVEEAIIALMQTILTVKLADGRTRRVQFLGGNDLDDPDRPAGVLNYSFDKRLVEILKDSAIWGKIALPVLMAFTSKYAVSLYENVAQWTGLNRKIYQDFTLENFRSMMGVEDGKYPAFGALNKHVVKPVIMEINALAPFNVSILPIKTGKKVTRIRVGWWSKTKDEMNEAWKEVHRPKIGRKARISNQAVTVFEPTPSENRIVRNDQALRDARKDI
SIO_010081: C6Y53_RS20610
subclass of: SO_0000673
so part of: C6Y53_RS20610
location: complement(2580..3470)
location: region:2580-3470:-1
so has part: feature:2580-3470:-1:exon

WP_211299576.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2580-3470:-1:exon

C6Y53_RS20615
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20615
old locus tag: C6Y53_20710
so part of: sequence
location: complement(3550..3894)
location: region:3550-3894:-1
so has part: feature:3550-3894:-1:exon
subclass of: SO_0000010

position:3550:-1
position: 3550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3894:-1
position: 3894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3550-3894:-1:exon

C6Y53_RS20615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20615
old locus tag: C6Y53_20710
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010687710.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: stability/partitioning determinant
translation: MTKERASLGFDDELDAFNPSEWSPRKPKPAQDRPKPEAARQIAQASGFQSREPVKEKPASTQRRRRTGRNAQFNIKAKPETIDAFCAIADGQGWGFGETLEHAVELLNEKYGAR
SIO_010081: C6Y53_RS20615
subclass of: SO_0000673
so part of: C6Y53_RS20615
location: complement(3550..3894)
location: region:3550-3894:-1
so has part: feature:3550-3894:-1:exon

WP_149615796.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3550-3894:-1:exon

C6Y53_RS20620
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20620
old locus tag: C6Y53_20715
so part of: sequence
location: complement(3896..4582)
location: region:3896-4582:-1
so has part: feature:3896-4582:-1:exon
subclass of: SO_0000010

position:3896:-1
position: 3896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4582:-1
position: 4582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3896-4582:-1:exon

C6Y53_RS20620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20620
old locus tag: C6Y53_20715
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007427784.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MPVISFANPKGGAGKTTTALLLASELASKGAQVTIIDADPEKWISQWGAMPGKPDNIEIISEVTEDGIIELIEDASGRAQFVVVDLEGTASLMVANAIGMSDLVMIPTQGSSMDAKGGAKTIRLIRNQERMARRAIPYAVVLTRTSAAVRSRALRNVQEQLWKAGIEVFETAIVERAAFRDLFDYGGSLADLDPTQVSNVEKARVNAQQFTGEVLARLRAAEQIAEAV
SIO_010081: C6Y53_RS20620
subclass of: SO_0000673
so part of: C6Y53_RS20620
location: complement(3896..4582)
location: region:3896-4582:-1
so has part: feature:3896-4582:-1:exon

WP_149615797.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3896-4582:-1:exon

C6Y53_RS20630
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20630
old locus tag: C6Y53_20725
so part of: sequence
location: complement(5251..6246)
location: region:5251-6246:-1
so has part: feature:5251-6246:-1:exon
subclass of: SO_0000010

position:5251:-1
position: 5251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6246:-1
position: 6246
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5251-6246:-1:exon

C6Y53_RS20630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20630
old locus tag: C6Y53_20725
inference: COORDINATES: protein motif:HMM:NF012798.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MALFATGGLLDDQGPLTHWRAISREAMKRQYGLWLGWLSQAEPEALGLCPVERATPKRLRAWLAAMGSLAPATLLGYVGAVVRLCRSIDPDRCWTAHQIILSGLHRATKHRGSPRKTGRIFSSDVLFEAGARLVHENDGPITHPDQAVRLRDGAVICLLALMPMRRRALSELALGTSLRVEDGQMMVCLDGAMTKNGQPWEAVVPDMLRDILAIYLKTARPMLAARGPGDHDALWLGRNGAPVSVNQFTRAIRIRTKSLLGVPVSPHLFRDAAATTLSRAAPSSARMIKPILGHATTRIAEGHYIQADTIAAGRRLASALDDLRNKKVSGG
SIO_010081: C6Y53_RS20630
subclass of: SO_0000673
so part of: C6Y53_RS20630
location: complement(5251..6246)
location: region:5251-6246:-1
so has part: feature:5251-6246:-1:exon

WP_211299577.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5251-6246:-1:exon

C6Y53_RS20635
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20635
old locus tag: C6Y53_20730
so part of: sequence
location: complement(6300..7994)
location: region:6300-7994:-1
so has part: feature:6300-7994:-1:exon
subclass of: SO_0000010

position:6300:-1
position: 6300
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7994:-1
position: 7994
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6300-7994:-1:exon

C6Y53_RS20635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20635
old locus tag: C6Y53_20730
inference: COORDINATES: protein motif:HMM:NF012798.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MSKYSKISLDGIFVPPATPSFADLIAQLKTDTVLKPARRKDLMSGLRRVAEALHRTPAQVPADPRWLQPRLARIAPAAVGITTKTWQNTVSNARNAMVACGIVSKRQRRVSDLSPEWRELWDMVRASKDKSLLNPLPRFIFFLNRINVMPKDVRSDHALLYLDAVELNEISKAPRATYKQAVMGWNLAINRLPAWPRQRLEFPSQAKRVMLPEKDHAPGFITDVDRYLEMRMRPDLLATEERFNPITASSAATYRYMLLRFASHVAGAGVPINQIASLEDMLQPAHVERGLRRMLDGNTGKTSASISDIAGLLLTMASHLDLPETTRSALARFKSRLIVRDTGGMTAKNRDRLRALRNPGVLGRLLRLPEQIMARPLGQHRFRALRTREDAIAIGILLYCPLRIANLSTLEVDRHLHRSGKGLMFLVIPANEVKNNRPLEFELPPHLVKMIDEFLASRAPILCTPDCPYLFPATRKDGPVAANGLSERIKRRVLTEIGVEMNAHLFRHLAVMIYLDANPGGYEVARQMLGHSSVSRTISVYSGLETISATQAFAAVVDKLRDGV
SIO_010081: C6Y53_RS20635
subclass of: SO_0000673
so part of: C6Y53_RS20635
location: complement(6300..7994)
location: region:6300-7994:-1
so has part: feature:6300-7994:-1:exon

WP_211299578.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6300-7994:-1:exon

C6Y53_RS20640
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20640
old locus tag: C6Y53_20735
so part of: sequence
location: complement(8158..8388)
location: region:8158-8388:-1
so has part: feature:8158-8388:-1:exon
subclass of: SO_0000010

position:8158:-1
position: 8158
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8388:-1
position: 8388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8158-8388:-1:exon

C6Y53_RS20640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20640
old locus tag: C6Y53_20735
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007803874.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MSRHKIPPNTALSNPSATPSHLKTVRDVAAEDQVSEKSVRRAIAAGLLDVIRVGPGKRLIRIHPDAHAAYRRAING
SIO_010081: C6Y53_RS20640
subclass of: SO_0000673
so part of: C6Y53_RS20640
location: complement(8158..8388)
location: region:8158-8388:-1
so has part: feature:8158-8388:-1:exon

WP_149615801.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8158-8388:-1:exon

C6Y53_RS20645
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20645
old locus tag: C6Y53_20740
so part of: sequence
location: complement(8582..9391)
location: region:8582-9391:-1
so has part: feature:8582-9391:-1:exon
subclass of: SO_0000010

position:8582:-1
position: 8582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9391:-1
position: 9391
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8582-9391:-1:exon

C6Y53_RS20645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20645
old locus tag: C6Y53_20740
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSSRPPLTLRDTRAEVLSAVRPDQTLYLQFDDYGCGPSWPVADYEEKGFFTAAQELKLASEHDLTPVLVSRLSLYVGNTLDIESLMNLVRVSRNKTVKAAEVALRRAVKHARQDARRQKQLADVLLGCSALFAETRADATLLGEAHAVARNPECSLADLLEIADAILTRPGSAAILAPADRRKVYDGRRDHIVRSCCYVWMDAGRPLTYTTRPDRLSGERRAGPLFDLIRAVMRMVLPKGGQPSDETIRKDIDQFRVLIVRYPELLDGR
SIO_010081: C6Y53_RS20645
subclass of: SO_0000673
so part of: C6Y53_RS20645
location: complement(8582..9391)
location: region:8582-9391:-1
so has part: feature:8582-9391:-1:exon

WP_149615802.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8582-9391:-1:exon

C6Y53_RS20650
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20650
old locus tag: C6Y53_20745
so part of: sequence
location: complement(9469..9705)
location: region:9469-9705:-1
so has part: feature:9469-9705:-1:exon
subclass of: SO_0000010

position:9469:-1
position: 9469
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9705:-1
position: 9705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9469-9705:-1:exon

C6Y53_RS20650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20650
old locus tag: C6Y53_20745
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015224431.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CopG family transcriptional regulator
translation: MSVMTIRLPDAQHERLRQLAKTRGVSINKVIEELTTRALTEFDLETRFHTRAARGDPDAALHLLDRMDQQDASEENRT
SIO_010081: C6Y53_RS20650
subclass of: SO_0000673
so part of: C6Y53_RS20650
location: complement(9469..9705)
location: region:9469-9705:-1
so has part: feature:9469-9705:-1:exon

WP_149615803.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9469-9705:-1:exon

C6Y53_RS20655
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20655
old locus tag: C6Y53_20750
so part of: sequence
location: complement(9702..10133)
location: region:9702-10133:-1
so has part: feature:9702-10133:-1:exon
subclass of: SO_0000010

position:9702:-1
position: 9702
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10133:-1
position: 10133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9702-10133:-1:exon

C6Y53_RS20655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20655
old locus tag: C6Y53_20750
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002708894.1
GO function: GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: putative toxin-antitoxin system toxin component, PIN family
translation: MRVVLDTNIIVSALLTGGTAPRRIIRLCLEGALTPLIGAALYAEYEDVLGRRDLFKRSVLDVTERDALFDALISVSAWTPIYFLWRPNLPDAGDDHLIELAVAGGAEWIVTANLRDLRRGELRFPYLSIGTADDFLKTQEPSS
SIO_010081: C6Y53_RS20655
subclass of: SO_0000673
so part of: C6Y53_RS20655
location: complement(9702..10133)
location: region:9702-10133:-1
so has part: feature:9702-10133:-1:exon

WP_149615804.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9702-10133:-1:exon

C6Y53_RS20660
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20660
old locus tag: C6Y53_20755
so part of: sequence
location: 10306..11859
location: region:10306-11859:1
so has part: feature:10306-11859:1:exon
subclass of: SO_0000010

position:10306:1
position: 10306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11859:1
position: 11859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10306-11859:1:exon

C6Y53_RS20660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20660
old locus tag: C6Y53_20755
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011749544.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ISL3 family transposase
translation: MRGCFDTRLLPEGLRATEHSVDGAVLTIDAEVLAAEVICPGCGQGSTRRHGRYVRHLTDFPAHGRSVQVRLSVRRFRCVASHCPTITFSESVPDCLACRHGRRTGRFQNLVAYLGRAMGGRPAQALGRRMRIGVSKDTFLRSAATGARTMEFEPRVIGIDDWAWRKGQRYGTLICDLERRAVIDLLPDREPATVAAWLRQHPQIEVVARDRNGGYRQAISEALPDATQVADRWHLLQNASDAFLAAVRRAMPAIRRTACSAALDPGILTAAERLQFEGFQRRQQTNVMIQRMGSEGVPIKRIVRITGLSRGLIRRVLRGEREDVFRLRQSSLTPWFPLLEQHWHDGCRNGAELWRRLRSHGFRGGLRVVGEWATRQRRAEAAIAHGSGKCPPSRKVARMMASGRYHLSKTDSIFVAQVEHALPQLAQDRRLLDAFTSMVRNGDEDELAAWLDQAKASGLAAFARGLSADLDAVAAALREPWSNGQTEGQINRLKMLKRQMYGAAGIDLLLARLQHSA
SIO_010081: C6Y53_RS20660
subclass of: SO_0000673
so part of: C6Y53_RS20660
location: 10306..11859
location: region:10306-11859:1
so has part: feature:10306-11859:1:exon

WP_149615824.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10306-11859:1:exon

C6Y53_RS20665
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20665
old locus tag: C6Y53_20760
so part of: sequence
location: 11989..12579
location: region:11989-12579:1
so has part: feature:11989-12579:1:exon
subclass of: SO_0000010

position:11989:1
position: 11989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12579:1
position: 12579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11989-12579:1:exon

C6Y53_RS20665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20665
old locus tag: C6Y53_20760
inference: COORDINATES: protein motif:HMM:NF033542.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS110 family transposase
translation: MLVVETIAKIRRAHFIQGKSIKQICRELRVSRNTVREMGVLYLDQISRLTELIEQMSDELECASKTDDELRRLCTVPGIGPVTAGAIAAFAPDLSTFDSGRNFAAWLGLVPRQRSSGGKARLGAVSKMGQCDIRKLLIVGAMSVIRWVVRKGGSANRWLANLVARKPRMVAAVALANKMARMIWAMTTKQENYRMA
SIO_010081: C6Y53_RS20665
subclass of: SO_0000673
so part of: C6Y53_RS20665
location: 11989..12579
location: region:11989-12579:1
so has part: feature:11989-12579:1:exon

WP_280178369.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11989-12579:1:exon

C6Y53_RS20670
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20670
old locus tag: C6Y53_20765
so part of: sequence
location: complement(13381..13986)
location: region:13381-13986:-1
so has part: feature:13381-13986:-1:exon
subclass of: SO_0000010

position:13381:-1
position: 13381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13986:-1
position: 13986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13381-13986:-1:exon

C6Y53_RS20670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20670
old locus tag: C6Y53_20765
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001549957.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MGQRAAIYARVSTADQSCDRQVLELTGFAERGGYEVIGVFKETASGASANRAARNRILDLAQARQIDAVLVSELSRWGRSTQDLLDTLNKLAGWKVSVVAMSGMTFELDTPHGRMMATMLAGIAQFERDLLSERVKSGLAAARARGKKLGRQPGQRSKSDKLAPKVVQAVAKGRSYRWIARDLGISKNTVLDIMKRHRENS
SIO_010081: C6Y53_RS20670
subclass of: SO_0000673
so part of: C6Y53_RS20670
location: complement(13381..13986)
location: region:13381-13986:-1
so has part: feature:13381-13986:-1:exon

WP_149615825.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13381-13986:-1:exon

C6Y53_RS20675
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20675
old locus tag: C6Y53_20770
so part of: sequence
location: 14081..16969
location: region:14081-16969:1
so has part: feature:14081-16969:1:exon
subclass of: SO_0000010

position:14081:1
position: 14081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16969:1
position: 16969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14081-16969:1:exon

C6Y53_RS20675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20675
old locus tag: C6Y53_20770
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009807927.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Tn3 family transposase
translation: MPRRSILTERQRSALFDLPTDETLMLRHYTLADDDIEHINERRRPENKIGFALQLCALRYPGRLLSSGEVIPEKVLRFIAAQLGLTGDDVLPYAARRQTRQQHLHTLRQIYGFKMFSGQGARSLKAWLENEAETAQSNEDLARRFFEECRRSQVILPGISVIERLCADALVSAERQTESRITNRIDDETKERLDALLTEIVDSNVTRFIWLRRFEAGSNSAGASRLLDRLEFLQELDLSPDILADVPPHRITRLRRQGERYFADGLRDITSDRRLAILAVCAVEWKAAIADAVIETHDRIVGKTWRDAKRLSDARIADARSSLRETLRSFKDLGAALLEAKADGAPLDAAVEVACGWSHLESMVITAAELTDMMAADALSHVVHGYHRFRRYAPRMLRALDICSAPVAAPLMQATKVIAHDQTDAPRQVGFLRRTSKWHRHLNAQDLGDNRLWEVAVLFQVREAFRSGDIWLPHSRRYADLKQALVPIETAKACPRLTMPFEPETWLDDRKARLAEGMKRLAKAARAGAIPGGSIENGVLKVDRLTAAIPADADGMVLDLYGRLPAVRITDLLQEVDDDIGFTETFTHLRTGVPCKDRIGLLNVLLAEGLNLGLSKMAEATSSHDYFQLSRLSRWHVESDAINRALAKVIEAQANLPMAQFWGGGMTASSDGQFFPTTRHGEAMNLINAKYGQEPGLKAYTHVSDQFGPFATQNIPATVNEAPYILDGLLMNEVGKKIKEQYADTGGFTDHVFAATALLSYRFVPRIRDLPSKRLYLFDPAVAPKEIRGLVGGKIREKPITENWPDILRAVATMAAGVMPPSQLLRKFASYPRQHELAVALREIGRIERTLFIIDWLLDADMQRRAQIGLNKGEAHHALKNALRIGRQGEIRDRTSEGQHYRMAGLNLLAAIIIYWNTKHLGHAVTTRKRAGLDCSPQLLAHISPLGWAHVLLTGEYRWKNR
SIO_010081: C6Y53_RS20675
subclass of: SO_0000673
so part of: C6Y53_RS20675
location: 14081..16969
location: region:14081-16969:1
so has part: feature:14081-16969:1:exon

WP_149615805.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14081-16969:1:exon

C6Y53_RS20680
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20680
old locus tag: C6Y53_20775
pseudo: true
so part of: sequence
location: complement(<17015..17134)
location: region:17015-17134:-1
so has part: feature:17015-17134:-1:exon
subclass of: SO_0000010

position:17015:-1
position: 17015
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:17134:-1
position: 17134
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17015-17134:-1:exon

C6Y53_RS20680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20680
old locus tag: C6Y53_20775
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012554517.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS481 family transposase
SIO_010081: C6Y53_RS20680
subclass of: SO_0000673
so part of: C6Y53_RS20680
location: complement(<17015..17134)
location: region:17015-17134:-1
so has part: feature:17015-17134:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17015-17134:-1:exon

C6Y53_RS20685
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20685
old locus tag: C6Y53_20780
so part of: sequence
location: complement(17206..18105)
location: region:17206-18105:-1
so has part: feature:17206-18105:-1:exon
subclass of: SO_0000010

position:17206:-1
position: 17206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18105:-1
position: 18105
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17206-18105:-1:exon

C6Y53_RS20685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20685
old locus tag: C6Y53_20780
inference: COORDINATES: protein motif:HMM:NF015431.2
GO function: GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LysR family transcriptional regulator
translation: MNSRQIEAFRAILHYGTLTRAAEVLNVSQSALSQLLLRTEDQTGPLFERVKGRLVPTALARRLSPEVDRTYEDLERLRKLILDLRDADTAPIRIGASSPLMLAYVPILMRMINDGELDLRIEVAVNPVATIYANLGKGEYDLGLTMMPSSTFDLQTEVIGQTEMVCLLHEDHPLAERDTISIADLKDQPIISYRPSIEFGAAIARTFRIEGVDYRPVFEVDLSIAAPVFVQQALGVAVVEGASPWWRFVGIRQRPLVPRITMPICFVTNAHTRTSSDVEALEMALRRIVNDAPDTGTGR
SIO_010081: C6Y53_RS20685
subclass of: SO_0000673
so part of: C6Y53_RS20685
location: complement(17206..18105)
location: region:17206-18105:-1
so has part: feature:17206-18105:-1:exon

WP_149615806.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17206-18105:-1:exon

C6Y53_RS20690
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20690
old locus tag: C6Y53_20785
so part of: sequence
location: complement(18133..19128)
location: region:18133-19128:-1
so has part: feature:18133-19128:-1:exon
subclass of: SO_0000010

position:18133:-1
position: 18133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19128:-1
position: 19128
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18133-19128:-1:exon

C6Y53_RS20690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20690
old locus tag: C6Y53_20785
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019402432.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding cassette domain-containing protein
translation: MPSDVVLEARDIERVFRTDASWFRGTRELHALRGVSVKLQRGGTLGIVGESGSGKSTLARILLGLDRPDAGEVFLDAKPVGQVGRIPFARRVQPVFQDPYSSLNPKRTVAETVAYPLVVHGVRSSAERERRTREILDRVGLTQRHAGSYPAQLSGGQRQRVAIARALILQPEVVICDEPTSALDVSIQAQVLNLLRELQSEMGVSYVLISHNLAVVENLATDLAIMYLGRIVESGPAERILRRPGHPYTSALLDSALTPARVGQLPDLELGIGAPDPMRRASGCAFEPRCMWHKTGACAKLAPPTRAIDGVEIECHHPLPPTESEDRKVIG
SIO_010081: C6Y53_RS20690
subclass of: SO_0000673
so part of: C6Y53_RS20690
location: complement(18133..19128)
location: region:18133-19128:-1
so has part: feature:18133-19128:-1:exon

WP_149615807.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18133-19128:-1:exon

C6Y53_RS20695
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20695
old locus tag: C6Y53_20790
so part of: sequence
location: complement(19118..20110)
location: region:19118-20110:-1
so has part: feature:19118-20110:-1:exon
subclass of: SO_0000010

position:19118:-1
position: 19118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20110:-1
position: 20110
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19118-20110:-1:exon

C6Y53_RS20695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20695
old locus tag: C6Y53_20790
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013209791.1
GO function: GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: MSLVEIEDLHVELPVRAGTVHAVRGVSLTVERGETLCIVGESGCGKSTAALAAMGLLPRHARLRAGRFSFQGKDLTHAGRRQLAALRGNRMGMIFQDAMTSLNPSYTVANQLCEVYRRHQGGSRKDAWDRALFLLDRVGMTNAAERMEQYPHQLSGGLRQRVMIAMALMCGPDLLIADEPTSALDVTIQIQILRLLRDLQQEFGMGMLFITHDLGVVAGIADRVAVMYAGEVIEIGSAEDVLRRAAHPYSQGLLHSAPVLGAGRGAPLESIPGVVPSLLERPQGCAFHGRCPHARAECIAAPVAMRRADEGHCARCILIDSPAMETAHAV
SIO_010081: C6Y53_RS20695
subclass of: SO_0000673
so part of: C6Y53_RS20695
location: complement(19118..20110)
location: region:19118-20110:-1
so has part: feature:19118-20110:-1:exon

WP_149615808.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19118-20110:-1:exon

C6Y53_RS20700
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20700
old locus tag: C6Y53_20795
so part of: sequence
location: complement(20107..21000)
location: region:20107-21000:-1
so has part: feature:20107-21000:-1:exon
subclass of: SO_0000010

position:20107:-1
position: 20107
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21000:-1
position: 21000
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20107-21000:-1:exon

C6Y53_RS20700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20700
old locus tag: C6Y53_20795
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017454718.1
GO function: GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter permease
translation: MKSLPLSAHPGVSRRLSSLRGKLRHLGFSIGAGIIALIVICAVFAPWLATADPYLQNVSQRMIPPVWHEGGSMAHPLGTDQLGRDYYSRLVYGSRISLVIGIGTVLISSVIGITLGALAGFFGGKIDAAVSFVLSVRLAIPVILVALAVSALAGSSLVTVILTLGFLLWDRFAVVARSLFQQLRAQDYVAAARAIGCSSWRIVLHEILPNAANALVVVATLEMAHAILLEAALSFLGLGVRPPTPSWGLMISEGKSYMFFSPWVIAIPGAALFLLVLAINLLGDGIRDLSEAKGRGR
SIO_010081: C6Y53_RS20700
subclass of: SO_0000673
so part of: C6Y53_RS20700
location: complement(20107..21000)
location: region:20107-21000:-1
so has part: feature:20107-21000:-1:exon

WP_149615809.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20107-21000:-1:exon

C6Y53_RS20705
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20705
old locus tag: C6Y53_20800
so part of: sequence
location: complement(21005..21919)
location: region:21005-21919:-1
so has part: feature:21005-21919:-1:exon
subclass of: SO_0000010

position:21005:-1
position: 21005
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21919:-1
position: 21919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21005-21919:-1:exon

C6Y53_RS20705
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20705
old locus tag: C6Y53_20800
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011537208.1
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter permease
translation: MLQFALKRLALAVLVAFMVSMVSFSLLRLTGDAAVALAGASASEETIAAVRHEHGLDRPLAVQYVTWLGNVLRGDLGKSYFFGTPVSSILAEYLPVTLTLGASAIVLAILVAVPLGVVSGLNPNSAIDRIALFFAVAGQAIPSFWLALLCIIWFGVRLQWFPISGDGTARHFVMPAVVLAYYAMPALMRMTRAGMIDVMESDYVRTARAKGLSEASVLIKHALRNAILPVVALAAVQFGFMLGGSVVVESVFALHGVGYLAWESIQRADIPMVQSIVLVVATIFVFMNLGADILNAALNPRLRT
SIO_010081: C6Y53_RS20705
subclass of: SO_0000673
so part of: C6Y53_RS20705
location: complement(21005..21919)
location: region:21005-21919:-1
so has part: feature:21005-21919:-1:exon

WP_149615810.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21005-21919:-1:exon

C6Y53_RS20710
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20710
old locus tag: C6Y53_20805
so part of: sequence
location: complement(21976..23496)
location: region:21976-23496:-1
so has part: feature:21976-23496:-1:exon
subclass of: SO_0000010

position:21976:-1
position: 21976
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23496:-1
position: 23496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21976-23496:-1:exon

C6Y53_RS20710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20710
old locus tag: C6Y53_20805
inference: COORDINATES: protein motif:HMM:NF012706.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter substrate-binding protein
translation: MNLRSLLTGALLGVCCLSVAPAPADAGKDDDTLNFVWRRDPQTLDFYNVLESSGLTLGVNVWDTLIYTNTETGEFEPLLAATWEWISPTELRFTLRKDVTFHNGEPFNADDVVYTVDMVTDKDNPVINQQMVAWIDRAEKIDDYTVSIFLKKPFAAALAYLAIGVPIYPNEYGAAVGKEGMATEPVGTGPYKVVSFEAGKQYTLEKWDGYFDGVKPKATIGTVVLRTLKDAQLRVAELMGGTADMAWDVDFDQAKQMDQMPNLTFRPVGTMRTQFLVLEPNGMKGPHPLTDIRVRQAIAHAINREAIVDNLLSKGSELTDVVCHPGMFGCVSDAEAYAYDPEEARRLLAEAGFADGFTVEMWETSSHTISEAIAGDLRNVGITANLHTVTWPAMYDAWTSGESLIAQSSTTHWSIKDVSITMSAYFGGNPQDIARDEELHALIDQANESIDPEERKAIYSQALARITENVYWVPLWNLSNNYVLNSDLDFTGAFDEIIRFNEASWK
SIO_010081: C6Y53_RS20710
subclass of: SO_0000673
so part of: C6Y53_RS20710
location: complement(21976..23496)
location: region:21976-23496:-1
so has part: feature:21976-23496:-1:exon

WP_149615811.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21976-23496:-1:exon

C6Y53_RS20715
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20715
old locus tag: C6Y53_20810
so part of: sequence
location: complement(23652..24536)
location: region:23652-24536:-1
so has part: feature:23652-24536:-1:exon
subclass of: SO_0000010

position:23652:-1
position: 23652
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24536:-1
position: 24536
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23652-24536:-1:exon

C6Y53_RS20715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20715
old locus tag: C6Y53_20810
inference: COORDINATES: protein motif:HMM:NF019474.2
GO function: GO:0016787 - hydrolase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: alpha/beta hydrolase
translation: MGAAAERARLDYDFNLRERCPNYGRDFAFWESESAVFRRAWPASQCDLAYGPHSLERYDLFLPSGDAGPVPFCLYLHPGSWQRLDKSLFSMIAPPLLDRGIAVAAVNYPLVPEVTIGGIVGRVRACLAEMRRDADRLGLDPDRIGMIGHSAGGHLAAMIHARASELDPGLRRAIRVVASVGGFYDLEPVRRSFMNMALGLDPETARDLSPISGEDRLDCPFVLVVGERETGEFRDQQRRMAEVLRRQGADPLELILPGQDHFSLVAELASRPNPVMTAVADALLAGVNSSGPGL
SIO_010081: C6Y53_RS20715
subclass of: SO_0000673
so part of: C6Y53_RS20715
location: complement(23652..24536)
location: region:23652-24536:-1
so has part: feature:23652-24536:-1:exon

WP_211299575.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23652-24536:-1:exon

C6Y53_RS20720
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20720
old locus tag: C6Y53_20815
so part of: sequence
location: complement(24556..25761)
location: region:24556-25761:-1
so has part: feature:24556-25761:-1:exon
subclass of: SO_0000010

position:24556:-1
position: 24556
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25761:-1
position: 25761
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24556-25761:-1:exon

C6Y53_RS20720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20720
old locus tag: C6Y53_20815
EC number: 1.-.-.-
inference: COORDINATES: protein motif:HMM:NF012517.2
GO function: GO:0016491 - oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LLM class flavin-dependent oxidoreductase
translation: MRVYHFTESPYTPAWKHADTMPIRNVMPGKYLDPMEASRLMNERLDEWALADEIGLDIMVNEHHATATSLNVSGSLPLAILARETSRARLLVLGIPLGMRHDPLLVAEELAYADVVSGGRLEMGLVKGGGVELGPTNSSPAELYARFWEAHDLILAAMTRHDAPFNFEGEHFHYRQVNLWPRPVQQPHPPVWMTCFSPASAIEVADHGYVVAATLSAVIAKQIFETYRKRCAELGRPEPGNDRFSYMAQVAVGHTEEEGLARLGQVRRYAWASSLSPEHFGSPAGYRPAEMVAKALRTPPKGSMFTNIPGRNGPAVNPVVCDPRDLIDPGVGFGGTPDQVYEQIVEFYRYCGGFGHLTAMMQGGPLNHADTSDSLRLFAAEVLPRLQDFVKSETGAAVETA
SIO_010081: C6Y53_RS20720
subclass of: SO_0000673
so part of: C6Y53_RS20720
location: complement(24556..25761)
location: region:24556-25761:-1
so has part: feature:24556-25761:-1:exon

WP_149615813.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24556-25761:-1:exon

C6Y53_RS20725
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20725
old locus tag: C6Y53_20820
so part of: sequence
location: complement(25758..26594)
location: region:25758-26594:-1
so has part: feature:25758-26594:-1:exon
subclass of: SO_0000010

position:25758:-1
position: 25758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26594:-1
position: 26594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25758-26594:-1:exon

C6Y53_RS20725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20725
old locus tag: C6Y53_20820
inference: COORDINATES: protein motif:HMM:NF024109.2
GO function: GO:0016787 - hydrolase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: alpha/beta hydrolase
translation: MTETLKETTPIRRETVSLAGREVDLCRAGQGGELLFLHSGPSPVYDSRSFLERLARDHTVFAPGHPGLGRLPRPAEFRRIDDLVYFYLDLVDELGLRGRPVVAASVGGWIAAEMALRDPGLFSAMVLINPLGLRVGAPMDRPIADIWAMPRTDRRALQFARAEFQSDDPAGRSDEELLELARFEENLSRYAWKPFLHNPVLARWLGRIRTRTLVIRGAEDRFVAEAVHRALAEGLPNAHLALVSGAGHQPHVEDPVAVALVIDDFLNDCRSTEGSAPR
SIO_010081: C6Y53_RS20725
subclass of: SO_0000673
so part of: C6Y53_RS20725
location: complement(25758..26594)
location: region:25758-26594:-1
so has part: feature:25758-26594:-1:exon

WP_149615814.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25758-26594:-1:exon

C6Y53_RS20730
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20730
old locus tag: C6Y53_20825
so part of: sequence
location: complement(26617..28593)
location: region:26617-28593:-1
so has part: feature:26617-28593:-1:exon
subclass of: SO_0000010

position:26617:-1
position: 26617
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28593:-1
position: 28593
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26617-28593:-1:exon

C6Y53_RS20730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20730
old locus tag: C6Y53_20825
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015934130.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hydantoinase B/oxoprolinase family protein
translation: MTDRTELQVFSNYCTAAADAMGYTLMRTAHSTFVKETEDFSCGLLTPQGLTFASPRGFGATWFIGLDYGPVIDQPGGYRDGDIWITNDPYAGGVATHTPDFHIWKPVFLDGDLICFAAGHIHNTDVGGAVPASLSRTLTEIQQEGIRVPPTRLMRDGELNTELLRIIENNVRVPSQNRGDLLAQIASVNVGARKVLDLAERMGAEAFGRSVEGILDYAHEQARAIVAAIPDGDYFHTEFADEDAPGGDPCRVALTLKVRGDTLEMDFTGSDPQLSSSLNMPTAGRERHALAMTGLGYVLYSLDRNLLLNAGALKVARAILPEGTVVNATFPAAVGMRSLICKHVQVVTLGAFARALPDRMCAAPAGSQSLVNVRSAGADGRTVMASVGPVGGGAGGSRAGDGDDGSGSVSGFLKNTPLEFSETELPVRFLRYGLVPGSGGPGRYRGGVGMEMAFEVLAPQTMVTARNRDHSRFAAWGLAGGAAGAVSTFSRIRPDGTEIELANSDIVHLDPGDVLRLRGPGGGGWGDPFERDPERVRRDVADRLLSADAARTQYGVVLDAEGAVDAAATTTERAGRTRPEGVVSHNAAQRAFESTWNPERYAALTEVLRQTAVPWRHWVKREIFAAIGEGREGADPAAEVFGTFEAIRARFPHLAVGA
SIO_010081: C6Y53_RS20730
subclass of: SO_0000673
so part of: C6Y53_RS20730
location: complement(26617..28593)
location: region:26617-28593:-1
so has part: feature:26617-28593:-1:exon

WP_244615045.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26617-28593:-1:exon

C6Y53_RS20735
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20735
old locus tag: C6Y53_20830
so part of: sequence
location: complement(28602..30641)
location: region:28602-30641:-1
so has part: feature:28602-30641:-1:exon
subclass of: SO_0000010

position:28602:-1
position: 28602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30641:-1
position: 30641
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28602-30641:-1:exon

C6Y53_RS20735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20735
old locus tag: C6Y53_20830
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003813978.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hydantoinase/oxoprolinase family protein
translation: MGYRVGVDIGGSFTDFAVLDEATGRFDALKVFSRPDAPGAEILAGLAELDARYGVKPEEIAHFTHGTTVGVNTVIQRSGLKLALLTTDGFEDVLELARLKSPDMYDLFSTRPEPLVARANVHGVVERLDASGKEIAPVDSGSVAAALDAALAAGCEGIVVSLLHSHTSGAHERAVREALVAAGCALPVFLSHEVWPIIREYERTTTAVINGYVQPRVAHYLTSMQAALKSVGVGPELLVTRSNGGVMTAEQGKDECVQMVLSGTASGVIGAAFLARAARVDKVISLDIGGTSADVALIRDGEPQYGIGEVIGDFQIHVPSVSVASIGDGGGSIAWLDAQGVLKVGPESAGSTPGPVCYGRGGTRPTITDSFVAAGLLGAGQLGYNAVSVDTEAARAAIAPLGEAVGLSVEQTAEAIRDISVSSMYAGTSAVISRFGINPTEYTMLAFGGAGPMMAAFLARALRMKEVLVPPHPGVLSALGGIVADLRGDFIASFYTALDDSTLAAMRAGLAELEDKAHEWLFGEQGFEGDAAIACFADMRYAGQSFEIGTEIPGRALAEGDAAGIAALFHREHERLFGHSDPEAAVQVINLRLVIRGGTPKPDLPEVAPKAYCPQPAGQARVWLDGAFREAAFYRRVDLRAGAQFEGPAVVMQDDTTTVVPPDCSVAVDGLSNLRISIQ
SIO_010081: C6Y53_RS20735
subclass of: SO_0000673
so part of: C6Y53_RS20735
location: complement(28602..30641)
location: region:28602-30641:-1
so has part: feature:28602-30641:-1:exon

WP_149615816.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28602-30641:-1:exon

C6Y53_RS20740
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20740
old locus tag: C6Y53_20835
so part of: sequence
location: complement(30848..31375)
location: region:30848-31375:-1
so has part: feature:30848-31375:-1:exon
subclass of: SO_0000010

position:30848:-1
position: 30848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31375:-1
position: 31375
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30848-31375:-1:exon

C6Y53_RS20740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20740
old locus tag: C6Y53_20835
inference: COORDINATES: protein motif:HMM:NF013756.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: flavin reductase family protein
translation: MTLAMRHDISLAERFRTAWRGMGSTVAVVAAEKDGRRQAMLATSVASVSLDPPSLLVCVNRNASMYATLAARGAFSLSLLAARQEPLAHHLAKHSGEARFIEGDWQVHRSGDPCIDGLPWLCGALASVFCRIEDSLDYGTHRIHVGRVLAVSGDGTCDPLLHGGGRFGQFRAVGG
SIO_010081: C6Y53_RS20740
subclass of: SO_0000673
so part of: C6Y53_RS20740
location: complement(30848..31375)
location: region:30848-31375:-1
so has part: feature:30848-31375:-1:exon

WP_149615817.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30848-31375:-1:exon

C6Y53_RS20745
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20745
old locus tag: C6Y53_20840
so part of: sequence
location: complement(31372..31692)
location: region:31372-31692:-1
so has part: feature:31372-31692:-1:exon
subclass of: SO_0000010

position:31372:-1
position: 31372
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31692:-1
position: 31692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31372-31692:-1:exon

C6Y53_RS20745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20745
old locus tag: C6Y53_20840
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTVTSTGALDILEPDDFGSFSIRFDSVREAATLPEAVRLVGSHDAEIGMGAVEDLLGVSDDPVRQAALIAMIEKARPIGWINDRTNAIRAHVIWSAGTDAGAGVTQ
SIO_010081: C6Y53_RS20745
subclass of: SO_0000673
so part of: C6Y53_RS20745
location: complement(31372..31692)
location: region:31372-31692:-1
so has part: feature:31372-31692:-1:exon

WP_149615818.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31372-31692:-1:exon

C6Y53_RS20750
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20750
old locus tag: C6Y53_20845
so part of: sequence
location: 32264..33298
location: region:32264-33298:1
so has part: feature:32264-33298:1:exon
subclass of: SO_0000010

position:32264:1
position: 32264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33298:1
position: 33298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32264-33298:1:exon

C6Y53_RS20750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20750
old locus tag: C6Y53_20845
inference: COORDINATES: similar to AA sequence:RefSeq:WP_028714619.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS110 family transposase
translation: MSEITTVGLDLAKNVFQVHGADAVGQAVLRRKLRRAQVLEFFAKLPPCLVAMEACAGAHFWGRELTRLGHDVRLIPPIYVKPFVKRQKNDAADAEAICEAIQRPSMRTVPIKSEETQAAASVFRVRELLIRQRTQSINALRGHLGEYGHVVPQGATNARRLVALVEDEDMELPVAARASLLALTTMLAQLEQQIAALDAEIARRARENPVARRLMTIPGIGPLIATAFATLAPPPELFAKGRDFAAWLGLTPRQHSTGGKQRLGSTTKMGERSLRRLLIIGANSVIIKRHCHASARPGTWLAGMLERKPAMLVRVALANKMARIVWALMKNEEAYRAPAVAAYV
SIO_010081: C6Y53_RS20750
subclass of: SO_0000673
so part of: C6Y53_RS20750
location: 32264..33298
location: region:32264-33298:1
so has part: feature:32264-33298:1:exon

WP_149615819.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32264-33298:1:exon

C6Y53_RS20755
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20755
old locus tag: C6Y53_20850
pseudo: true
so part of: sequence
location: 33376..>33752
location: region:33376-33752:1
so has part: feature:33376-33752:1:exon
subclass of: SO_0000010

position:33376:1
position: 33376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33752:1
position: 33752
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33376-33752:1:exon

C6Y53_RS20755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20755
old locus tag: C6Y53_20850
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611865.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: C6Y53_RS20755
subclass of: SO_0000673
so part of: C6Y53_RS20755
location: 33376..>33752
location: region:33376-33752:1
so has part: feature:33376-33752:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:33376-33752:1:exon

C6Y53_RS20760
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20760
old locus tag: C6Y53_20855
so part of: sequence
location: complement(33910..36813)
location: region:33910-36813:-1
so has part: feature:33910-36813:-1:exon
subclass of: SO_0000010

position:33910:-1
position: 33910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:36813:-1
position: 36813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33910-36813:-1:exon

C6Y53_RS20760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20760
old locus tag: C6Y53_20855
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009807927.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Tn3 family transposase
translation: MPRRSILTARQRAALFDLPTDEATILYHYTLADDDLEVIRTRRHARNRLGFALQLCAFRYPGRMLASGEVIPEAVSSFIAAQLGEEMDELCRYAETDVTRRRHLIELRQVYGFKMFSGHRARELNAWLAGEAEVATSNHDLARRLVEECRRTQTILPGVSVIQRLCADALVAAERRIESAIVNRLDEDRRACLDTLLTEMVDGTVSRFVWLRHFEVGQNSADVGRLLDRLEVLRDLNISPDILAGIPPHRVTRLRRQGERYFADGLRDISSDRRLAILAVCAVEWSAAISDAVVETHDRIVGKTWQGAKRLCDARIADAKAAVQDTLRAFKSLGLALLDARSDGASLDQATELACGWDQLEGLVATAAELTDTMAADPLAHVGQGYHRFRRYAPRMLRVLDIEAADVAAPLLHASTLIADDEKPETRPVGFLRRGSKWHRHLNAEDGDGHRLWEVAVLFHLREAFRSGDIWLPHSRRYADLKQALVPAEAVEGAPRLTVPLDPETWLADRKARMTEGLARLAKAAHAGAIPGGSIENGVLKIERLSAAVPQEADELVLDLYDRLPAIRITELMQEVDADIGFTETFTHLHTGAPCKDQIGMLTVLLAEGLNLGLSKMAEATSTHDYFQLSRLSRWHVENDAINQALAMVIEAQARLPMAQFWGGGVTASSDGQFFPAARQGEAMNLINAKYGSEPGLKAYTHVSDQFGPFATQNIPATVSEAPYILDGLLMNDAGRKISEQYADTGGFTDQVFAVTALLSYRFIPRIRDLPSTRLHLFDPATAPNELRGLIGGKIREGVIVQNWPGVLRSVATMATGVMPPSQLLKKFAAYPRQHDLAVALREIGRIERTLFIIEWLLDANMQRRAQVGLNKGEAHHALKNALRIGRQGEIRDRTTEGQHYRMAGLNLLAAIIIYWNTKHLGHAVDARQQAGLNCAPDLLAHISPLGWAHILLTGEYRWRGSQRTSL
SIO_010081: C6Y53_RS20760
subclass of: SO_0000673
so part of: C6Y53_RS20760
location: complement(33910..36813)
location: region:33910-36813:-1
so has part: feature:33910-36813:-1:exon

WP_149615820.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33910-36813:-1:exon

C6Y53_RS20765
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20765
old locus tag: C6Y53_20860
so part of: sequence
location: 36908..37513
location: region:36908-37513:1
so has part: feature:36908-37513:1:exon
subclass of: SO_0000010

position:36908:1
position: 36908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37513:1
position: 37513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36908-37513:1:exon

C6Y53_RS20765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20765
old locus tag: C6Y53_20860
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001549957.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MGQRAAIYARVSTSDQSCERQVAELTAFAERGCYDVVGVFKETASGASANRAARNQILDLAQARQIDAILVSELSRWGRSTQDLLDTLNRLAGWKVSVVAMNGMTFELDTPHGRMMATMLAGIAQFERDLLSERVKSGLAAARARGKKLGRQPGQRPKSDKLAPKVLQAVQEGRSYRWIARDLGISKNTVLEIMKRQRENL
SIO_010081: C6Y53_RS20765
subclass of: SO_0000673
so part of: C6Y53_RS20765
location: 36908..37513
location: region:36908-37513:1
so has part: feature:36908-37513:1:exon

WP_149615821.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36908-37513:1:exon

C6Y53_RS20770
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20770
old locus tag: C6Y53_20865
so part of: sequence
location: 37970..38542
location: region:37970-38542:1
so has part: feature:37970-38542:1:exon
subclass of: SO_0000010

position:37970:1
position: 37970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38542:1
position: 38542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37970-38542:1:exon

C6Y53_RS20770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20770
old locus tag: C6Y53_20865
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010141882.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MTDQERRQIALQRAKGVPVRELAVRFSVSQKTIYNALNHGRATRSANDSRTCVLTMRVSDRDLRGFDAALSRRGIAHRSDAMRRLMLAADDLLRPDEMMTEELRAMSAALNRVGNNVNQVARRLNEAKLKGERLPYTAASHAEIRGLAGLVFDMADQVQELFRARRRALDLEVTEALRGLATNAGRDCSV
SIO_010081: C6Y53_RS20770
subclass of: SO_0000673
so part of: C6Y53_RS20770
location: 37970..38542
location: region:37970-38542:1
so has part: feature:37970-38542:1:exon

WP_244615046.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:37970-38542:1:exon

C6Y53_RS20775
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20775
old locus tag: C6Y53_20870
so part of: sequence
location: 38565..38768
location: region:38565-38768:1
so has part: feature:38565-38768:1:exon
subclass of: SO_0000010

position:38565:1
position: 38565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38768:1
position: 38768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38565-38768:1:exon

C6Y53_RS20775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20775
old locus tag: C6Y53_20870
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKSGLAAARAQGKKLDRQPGQRPKSIKLAPKVVQVADGRSDRWTARDLGIGKNTVLEIMKRQRQNSL
SIO_010081: C6Y53_RS20775
subclass of: SO_0000673
so part of: C6Y53_RS20775
location: 38565..38768
location: region:38565-38768:1
so has part: feature:38565-38768:1:exon

WP_244615047.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:38565-38768:1:exon

C6Y53_RS20780
type: Gene
subclass of: SO_0000704
RO_0002162: 2605946
locus tag: C6Y53_RS20780
old locus tag: C6Y53_20875
pseudo: true
so part of: sequence
location: <38800..39777
location: region:38800-39777:1
so has part: feature:38800-39777:1:exon
subclass of: SO_0000010

position:38800:1
position: 38800
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:39777:1
position: 39777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38800-39777:1:exon

C6Y53_RS20780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2605946
locus tag: C6Y53_RS20780
old locus tag: C6Y53_20875
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611527.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS3 family transposase
SIO_010081: C6Y53_RS20780
subclass of: SO_0000673
so part of: C6Y53_RS20780
location: <38800..39777
location: region:38800-39777:1
so has part: feature:38800-39777:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:38800-39777:1:exon