Paraburkholderia dioscoreae strain Msb3 plasmid pIII.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Paraburkholderia.
Submitted (18-AUG-2019) UNIVERSITY OF VIENNA, Department of Ecogenomics and Systems Biology, UZA I, Althanstrasse 14, 1090 Vienna, Austria
REFSEQ INFORMATION: The reference sequence is identical to\nLR699557.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/12/2022 08:12:22\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,542\nCDSs (total) :: 7,456\nGenes (coding) :: 7,321\nCDSs (with protein) :: 7,321\nGenes (RNA) :: 86\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 64\nncRNAs :: 4\nPseudo Genes (total) :: 135\nCDSs (without protein) :: 135\nPseudo Genes (ambiguous residues) :: 0 of 135\nPseudo Genes (frameshifted) :: 55 of 135\nPseudo Genes (incomplete) :: 108 of 135\nPseudo Genes (internal stop) :: 11 of 135\nPseudo Genes (multiple problems) :: 34 of 135\n##Genome-Annotation-Data-END##
type strain of Paraburkholderia dioscoreae
COORDINATES: similar to AA sequence:RefSeq:WP_007585041.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007585043.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343256.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343254.1
COORDINATES: similar to AA sequence:RefSeq:WP_011831589.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585048.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432949.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585053.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007585056.1
COORDINATES: similar to AA sequence:RefSeq:WP_015004435.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018310256.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585065.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585066.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343225.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585068.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585069.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0015074 - DNA integration [Evidence IEA]
Members of this protein family are the putative conjugative coupling factor, TraD, as the term is used for the SXT and TOL plasmid systems; Derived by automated computational analysis using gene prediction method: Protein Homology.
conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_011875538.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585071.1
GO:0030255 - protein secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007585072.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585074.1
VirB4 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_007585076.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_007585078.1
COORDINATES: similar to AA sequence:RefSeq:WP_011875532.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585082.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585084.1
COORDINATES: similar to AA sequence:RefSeq:WP_013700032.1
COORDINATES: similar to AA sequence:RefSeq:WP_013954393.1
COORDINATES: similar to AA sequence:RefSeq:WP_007582533.1
COORDINATES: similar to AA sequence:RefSeq:WP_007582531.1
COORDINATES: similar to AA sequence:RefSeq:WP_007582529.1
COORDINATES: similar to AA sequence:RefSeq:WP_007181179.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_007582516.1
COORDINATES: similar to AA sequence:RefSeq:WP_007582514.1
COORDINATES: similar to AA sequence:RefSeq:WP_007582512.1
COORDINATES: protein motif:HMM:TIGR03742.1
COORDINATES: similar to AA sequence:RefSeq:WP_012217989.1
COORDINATES: similar to AA sequence:RefSeq:WP_007582506.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343161.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585604.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585606.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0140658 - ATP-dependent chromatin remodeler activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007585608.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585616.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343144.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343143.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585622.1
COORDINATES: protein motif:HMM:NF025712.2
Lar family restriction alleviation protein
COORDINATES: similar to AA sequence:RefSeq:WP_008343139.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585628.1
COORDINATES: similar to AA sequence:RefSeq:WP_007582481.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343126.1
primase-helicase zinc-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007588669.1
COORDINATES: similar to AA sequence:RefSeq:WP_008649407.1