Paraburkholderia dioscoreae strain Msb3 plasmid pII.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Paraburkholderia.
Submitted (18-AUG-2019) UNIVERSITY OF VIENNA, Department of Ecogenomics and Systems Biology, UZA I, Althanstrasse 14, 1090 Vienna, Austria
REFSEQ INFORMATION: The reference sequence is identical to\nLR699556.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/12/2022 08:12:22\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,542\nCDSs (total) :: 7,456\nGenes (coding) :: 7,321\nCDSs (with protein) :: 7,321\nGenes (RNA) :: 86\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 64\nncRNAs :: 4\nPseudo Genes (total) :: 135\nCDSs (without protein) :: 135\nPseudo Genes (ambiguous residues) :: 0 of 135\nPseudo Genes (frameshifted) :: 55 of 135\nPseudo Genes (incomplete) :: 108 of 135\nPseudo Genes (internal stop) :: 11 of 135\nPseudo Genes (multiple problems) :: 34 of 135\n##Genome-Annotation-Data-END##
type strain of Paraburkholderia dioscoreae
COORDINATES: similar to AA sequence:RefSeq:WP_008344699.1
GO:0004803 - transposase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018417454.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010959400.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_020066993.1
COORDINATES: similar to AA sequence:RefSeq:WP_012214169.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004554083.1
COORDINATES: similar to AA sequence:RefSeq:WP_012431280.1
COORDINATES: similar to AA sequence:RefSeq:WP_011000214.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008920857.1
GO:0004476 - mannose-6-phosphate isomerase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_008920856.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004194209.1
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_010116897.1
UDP-3-O-acyl N-acetylglycosamine deacetylase
COORDINATES: similar to AA sequence:RefSeq:WP_011402028.1
COORDINATES: similar to AA sequence:RefSeq:WP_018437969.1
COORDINATES: similar to AA sequence:RefSeq:WP_009904087.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_009889311.1
COORDINATES: protein motif:HMM:NF016145.2
polysaccharide pyruvyl transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006025394.1
COORDINATES: similar to AA sequence:RefSeq:WP_013831335.1
COORDINATES: similar to AA sequence:RefSeq:WP_006025396.1
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: protein motif:HMM:NF024824.2
COORDINATES: similar to AA sequence:RefSeq:WP_012327954.1
COORDINATES: similar to AA sequence:RefSeq:WP_012435383.1
polysaccharide biosynthesis/export family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006484962.1
COORDINATES: similar to AA sequence:RefSeq:WP_011351041.1
COORDINATES: similar to AA sequence:RefSeq:WP_004194323.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012432223.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691736.1
COORDINATES: similar to AA sequence:RefSeq:WP_011235908.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017842830.1
COORDINATES: similar to AA sequence:RefSeq:WP_006999614.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_018245369.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_006397720.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_007731387.1
COORDINATES: similar to AA sequence:RefSeq:WP_017279408.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017331031.1
COORDINATES: similar to AA sequence:RefSeq:WP_013339757.1
GO:0008761 - UDP-N-acetylglucosamine 2-epimerase activity [Evidence IEA]
UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
COORDINATES: similar to AA sequence:RefSeq:WP_015002288.1
COORDINATES: similar to AA sequence:RefSeq:WP_013587925.1
COORDINATES: similar to AA sequence:RefSeq:WP_014900174.1
COORDINATES: protein motif:HMM:NF024679.2
COORDINATES: protein motif:HMM:NF022630.2
GO:0042121 - alginic acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008326667.1
COORDINATES: protein motif:HMM:NF028132.2
COORDINATES: similar to AA sequence:RefSeq:WP_020294305.1
twin-arginine translocation pathway signal
COORDINATES: similar to AA sequence:RefSeq:WP_020308273.1
COORDINATES: similar to AA sequence:RefSeq:WP_006401411.1
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0071973 - bacterial-type flagellum-dependent cell motility [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013340878.1
GO:0009288 - bacterial-type flagellum [Evidence IEA]
GO:0007155 - cell adhesion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007179992.1
COORDINATES: similar to AA sequence:RefSeq:WP_014192387.1
COORDINATES: similar to AA sequence:RefSeq:WP_020704094.1
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018312156.1
COORDINATES: protein motif:HMM:NF024244.2
COORDINATES: similar to AA sequence:RefSeq:WP_011000219.1
COORDINATES: similar to AA sequence:RefSeq:WP_060768813.1
COORDINATES: similar to AA sequence:RefSeq:WP_013516320.1
COORDINATES: similar to AA sequence:RefSeq:WP_013516321.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406576.1
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB