Ruania zhangjianzhongii strain HY168 plasmid unnamed, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Ruaniaceae; Ruania.
Submitted (12-AUG-2019) National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing 102206, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP042827.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. HGAP 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 178.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 11:00:06\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,706\nCDSs (total) :: 4,651\nGenes (coding) :: 4,606\nCDSs (with protein) :: 4,606\nGenes (RNA) :: 55\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 3\nPseudo Genes (total) :: 45\nCDSs (without protein) :: 45\nPseudo Genes (ambiguous residues) :: 0 of 45\nPseudo Genes (frameshifted) :: 21 of 45\nPseudo Genes (incomplete) :: 24 of 45\nPseudo Genes (internal stop) :: 1 of 45\nPseudo Genes (multiple problems) :: 1 of 45\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013209.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005141570.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006896699.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005053976.1
COORDINATES: protein motif:HMM:NF013700.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014581.2
TraM recognition domain-containing protein
COORDINATES: protein motif:HMM:NF020387.2
COORDINATES: similar to AA sequence:RefSeq:WP_006901488.1
COORDINATES: similar to AA sequence:RefSeq:WP_019273620.1
COORDINATES: similar to AA sequence:RefSeq:WP_005184825.1
adenine-specific methyltransferase EcoRI family protein
COORDINATES: protein motif:HMM:NF024554.2
COORDINATES: protein motif:HMM:NF024991.2
COORDINATES: protein motif:HMM:NF020332.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012493.2
COORDINATES: similar to AA sequence:RefSeq:WP_011931183.1