Candidatus Sneabacter namystus isolate 1621 plasmid unnamed.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Candidatus Sneabacter.
Highly reduced genomes of protist endosymbionts show evolutionary convergence
Submitted (25-AUG-2019) Botany, University of British Columbia, 3200-6270 University Blvd., Vancouver, BC V6T 1Z4, Canada
REFSEQ INFORMATION: The reference sequence is identical to\nCP043313.1.\nAssembly not circularized.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. v3.11.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 500x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/05/2023 04:20:20\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 624\nCDSs (total) :: 585\nGenes (coding) :: 578\nCDSs (with protein) :: 578\nGenes (RNA) :: 39\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 34\nncRNAs :: 2\nPseudo Genes (total) :: 7\nCDSs (without protein) :: 7\nPseudo Genes (ambiguous residues) :: 0 of 7\nPseudo Genes (frameshifted) :: 0 of 7\nPseudo Genes (incomplete) :: 7 of 7\nPseudo Genes (internal stop) :: 0 of 7\n##Genome-Annotation-Data-END##
COORDINATES: protein motif:HMM:NF018516.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
type VI secretion system ImpA family N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF025472.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013970.2
type II toxin-antitoxin system VapC family toxin
COORDINATES: protein motif:HMM:TIGR01439.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF017730.2
type VI secretion system contractile sheath large subunit
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF023069.2
DnaA N-terminal domain-containing protein
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: protein motif:HMM:NF019284.2
COORDINATES: protein motif:HMM:NF018470.2
COORDINATES: protein motif:HMM:TIGR03349.1
type IVB secretion system protein IcmH/DotU
COORDINATES: protein motif:HMM:TIGR03353.2
GO:0003674 - molecular_function [Evidence IEA]
GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
type VI secretion system baseplate subunit TssK
COORDINATES: protein motif:HMM:TIGR03357.1
type VI secretion system baseplate subunit TssE
COORDINATES: protein motif:HMM:TIGR03359.1
type VI secretion system baseplate subunit TssF
COORDINATES: protein motif:HMM:NF018675.2
type VI secretion system baseplate subunit TssG
COORDINATES: protein motif:HMM:NF019344.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005396386.1
GO:0033104 - type VI protein secretion system complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014747169.1
type VI secretion system contractile sheath small subunit