Pseudomonas eucalypticola strain NP-1 plasmid pPENP1, complete sequence.
type: Entry
definition: Pseudomonas eucalypticola strain NP-1 plasmid pPENP1, complete sequence.
sequence version: NZ_CP056031.1
sequence date: 2023-04-29
sequence: sequence
division: CON
label: NZ_CP056031.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN15248734
keyword: RefSeq
source: Pseudomonas eucalypticola
organism: Pseudomonas eucalypticola
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP056031.1.\nBacteria and source DNA available from Institute of Forestry\nProtection in Fujian Agriculture and Forestry University.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: MAY-2018\nAssembly Method :: SMRT portal v. v3.2.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 120.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/29/2023 03:10:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,809\nCDSs (total) :: 5,697\nGenes (coding) :: 5,616\nCDSs (with protein) :: 5,616\nGenes (RNA) :: 112\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 83\nncRNAs :: 4\nPseudo Genes (total) :: 81\nCDSs (without protein) :: 81\nPseudo Genes (ambiguous residues) :: 0 of 81\nPseudo Genes (frameshifted) :: 34 of 81\nPseudo Genes (incomplete) :: 46 of 81\nPseudo Genes (internal stop) :: 15 of 81\nPseudo Genes (multiple problems) :: 13 of 81\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 28775
topology: circular
so has quality: SO_0000988
location: 1..28775
location: region:1-28775:1
RO_0002162: 2599595

NZ_CP056031
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN15248734
type: BioSample
SIO_000068: biosample

1
title: Pseudomonas eucalypticola sp. nov., an endophyte of Eucalyptus dunnii leaves with biocontrol ability of eucalyptus leaf blight
author: Liu, Y.
author: Song, Z.
author: Zeng, H.
author: Lu, M.
author: Wang, X.
author: Lian, X.
author: Zhang, Q.
journal: Unpublished

2
title: Direct Submission
author: Liu, Y.
author: Song, Z.
author: Zeng, H.
author: Lu, M.
author: Wang, X.
author: Lian, X.
author: Zhang, Q.
journal: Submitted (16-JUN-2020) Forestry Protection, Fujian Agriculture and Forestry University, Shangxiadian Road, Fuzhou, Fujian 350002, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28775:1
position: 28775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-28775:1:source
so part of: sequence
organism: Pseudomonas eucalypticola
mol type: genomic DNA
strain: NP-1
isolation source: plant leaf
type material: type strain of Pseudomonas eucalypticola
plasmid: pPENP1
country: China: Nanping
lat lon: 26.59 N 118.16 E
collection date: 2016-04-18
identified by: Qinghua Zhang, Yujing Liu, Xinkun Lian

2599595
type: Taxonomy
SIO_000068: taxonomy

HWQ56_RS28760
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28760
old locus tag: HWQ56_28760
so part of: sequence
location: join(28671..28775,1..195)
location: region:1-28775:1
so has part: feature:28671-28775:1:exon
so has part: feature:1-195:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:28671-28775:1:exon

position:28671:1
position: 28671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-195:1:exon

position:195:1
position: 195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

HWQ56_RS28760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28760
old locus tag: HWQ56_28760
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: VirB3 family type IV secretion system protein
translation: MDKNDGILVDTLFVGPTRPTMRWGVTWQAFIINMMFTIECFVFTKNLLWLLMFFPYTWCYTPFVCMTLGHLKSFTFGVVPRRLRSWAIFITGERRPTAP
SIO_010081: HWQ56_RS28760
subclass of: SO_0000673
so part of: HWQ56_RS28760
location: join(28671..28775,1..195)
location: region:1-28775:1
so has part: feature:28671-28775:1:exon
so has part: feature:1-195:1:exon

WP_245217910.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28671-28775:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-195:1:exon

HWQ56_RS28765
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28765
old locus tag: HWQ56_28765
so part of: sequence
location: 259..1068
location: region:259-1068:1
so has part: feature:259-1068:1:exon
subclass of: SO_0000010

position:259:1
position: 259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1068:1
position: 1068
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:259-1068:1:exon

HWQ56_RS28765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28765
old locus tag: HWQ56_28765
inference: COORDINATES: protein motif:HMM:NF015118.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSFAEKLKKKVIKIEPPVSNKLPFEVHLDKHTIMTKDRDYMQVIRLTGASFESADDEQLNILHKRLNSLFKNISSHNVALWQHIIRRRETKYPPGEFPEGFAKDLNEKYSSRLSGEKLRVNELYLTVIYRPFPSIFSNTVFKLVSSADKATREAERLQAVEVLNKVVRQIMRSLRRYDAEKLGIYKYQGIYCSEPMELMSFLLNGRWQRVALAQAPLRKLVAATRPFFGNETVEVRSATGTFYGALLGIGLIPTETSSVFLNELLNRAV
SIO_010081: HWQ56_RS28765
subclass of: SO_0000673
so part of: HWQ56_RS28765
location: 259..1068
location: region:259-1068:1
so has part: feature:259-1068:1:exon

WP_176572502.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:259-1068:1:exon

HWQ56_RS28770
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28770
old locus tag: HWQ56_28770
so part of: sequence
location: 1688..1993
location: region:1688-1993:1
so has part: feature:1688-1993:1:exon
subclass of: SO_0000010

position:1688:1
position: 1688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1993:1
position: 1993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1688-1993:1:exon

HWQ56_RS28770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28770
old locus tag: HWQ56_28770
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSCSRKDRDTEIIIRALGGKYYPIQSGVRTNWNPFKLDLHNPITGPFLKRLTLYLAAAQGDVTKLEVGEVEQIEAAVNSVLRLDLEHRRLAASWIIWNRTH
SIO_010081: HWQ56_RS28770
subclass of: SO_0000673
so part of: HWQ56_RS28770
location: 1688..1993
location: region:1688-1993:1
so has part: feature:1688-1993:1:exon

WP_176572503.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1688-1993:1:exon

HWQ56_RS28775
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28775
old locus tag: HWQ56_28775
so part of: sequence
location: 2111..2695
location: region:2111-2695:1
so has part: feature:2111-2695:1:exon
subclass of: SO_0000010

position:2111:1
position: 2111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2695:1
position: 2695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2111-2695:1:exon

HWQ56_RS28775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28775
old locus tag: HWQ56_28775
inference: COORDINATES: protein motif:HMM:NF040179.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MITGFDVTAFLDHAELRAPINMYLFHLVSTLVDGRRFALFIAEFWKALGDPPFQSFVQDQLKTIRKNNGFVVLDSQSPNDALSSPICDTLIEQTPNKVLFPNDKADYAQYKKLGTSDRVFQLVKETDPEASRVFVLQQGHSSVVCRFDMEGMKYELDVLSSKKHTVALVEKLRAEHGEQPENWLPHFKTAERKS
SIO_010081: HWQ56_RS28775
subclass of: SO_0000673
so part of: HWQ56_RS28775
location: 2111..2695
location: region:2111-2695:1
so has part: feature:2111-2695:1:exon

WP_176572504.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2111-2695:1:exon

HWQ56_RS28780
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28780
old locus tag: HWQ56_28780
so part of: sequence
location: 2692..3423
location: region:2692-3423:1
so has part: feature:2692-3423:1:exon
subclass of: SO_0000010

position:2692:1
position: 2692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3423:1
position: 3423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2692-3423:1:exon

HWQ56_RS28780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28780
old locus tag: HWQ56_28780
inference: COORDINATES: protein motif:HMM:NF019608.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system protein
translation: MMMTIKRLSFVVGLATAFGSGAALADVVPVIDGLAIEKAIANGVIMSNQLTQIENNLRVAQNQYSSLTGSRGLGTLLSDSPRNGLPANWAEGMALLNSNSGATYGDLASSATQIRQAQAVLSSSEAASLSPQMQSYLSQMRNMSANQQALGQAAYTNSATRIATLERLTNSINAQTDPKAIMDLQAVAQSEQAKLANDQAQLQSVQQLTQANDQAARQMQNEMRMQVSGSADFPALDTSIPSN
SIO_010081: HWQ56_RS28780
subclass of: SO_0000673
so part of: HWQ56_RS28780
location: 2692..3423
location: region:2692-3423:1
so has part: feature:2692-3423:1:exon

WP_176572505.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2692-3423:1:exon

HWQ56_RS28785
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28785
old locus tag: HWQ56_28785
so part of: sequence
location: 3817..4584
location: region:3817-4584:1
so has part: feature:3817-4584:1:exon
subclass of: SO_0000010

position:3817:1
position: 3817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4584:1
position: 4584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3817-4584:1:exon

HWQ56_RS28785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28785
old locus tag: HWQ56_28785
inference: COORDINATES: protein motif:HMM:NF016491.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system protein
translation: MMDGLQRILKMVCILYVGFQFAAYNQYVVNTFNVAPLELGTAFFGANDTTTIFGSLDSILVKGFTAGKKFWDQGGILVGDPGMYMVAILVWGQTIIVTAYACFLIVASQIALAIILALGPLFIFSLMFQATSDYFSRWVQQLSNYALVILMTIAANALIMTLYERASTGAAAITSTAQINQLFPFLVTGAISLLCLAQIPSKAAGLAGGVSINSYGAGRLAARMLQRSLRSILPRRRPGGGGGERKRPRGGSIRT
SIO_010081: HWQ56_RS28785
subclass of: SO_0000673
so part of: HWQ56_RS28785
location: 3817..4584
location: region:3817-4584:1
so has part: feature:3817-4584:1:exon

WP_176572532.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3817-4584:1:exon

HWQ56_RS28790
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28790
old locus tag: HWQ56_28790
so part of: sequence
location: 4718..4903
location: region:4718-4903:1
so has part: feature:4718-4903:1:exon
subclass of: SO_0000010

position:4718:1
position: 4718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4903:1
position: 4903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4718-4903:1:exon

HWQ56_RS28790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28790
old locus tag: HWQ56_28790
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKNVFRVLVLSAIFAAAGCAHQPPSCDGKARRPINADREAGISYPSCGQAVAFNAFDLGDG
SIO_010081: HWQ56_RS28790
subclass of: SO_0000673
so part of: HWQ56_RS28790
location: 4718..4903
location: region:4718-4903:1
so has part: feature:4718-4903:1:exon

WP_176572506.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4718-4903:1:exon

HWQ56_RS28795
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28795
old locus tag: HWQ56_28795
so part of: sequence
location: 4903..5790
location: region:4903-5790:1
so has part: feature:4903-5790:1:exon
subclass of: SO_0000010

position:5790:1
position: 5790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4903-5790:1:exon

HWQ56_RS28795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28795
old locus tag: HWQ56_28795
inference: COORDINATES: protein motif:HMM:NF016238.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system protein
translation: MDKRQKLPPESEKTSADDKALQRFLGTINSFVESHDDIQQILQASQSWADTEVERLEKAKTWAYRIAGGAVLFACGALWVAHEAIQTAMVPPPPPQVLVMNETTGAINPLMSLTEVKVKYEDALLRRALNTFSICRERYIRDMAESDYFCAASFMSPQLQSQWAKYWDTENPNGPLTVYGNRASVKVQIESISPRQNSQGIVDTAQIYFTRTVTENGTPTVTHWVADVSFKMVNLPKEEAQRRVNDIGLQITQYNTNQVLSAASPAARNQAPAPVTAAPRQGLTAPAYSPNQGRD
SIO_010081: HWQ56_RS28795
subclass of: SO_0000673
so part of: HWQ56_RS28795
location: 4903..5790
location: region:4903-5790:1
so has part: feature:4903-5790:1:exon

WP_176572507.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4903-5790:1:exon

HWQ56_RS28800
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28800
old locus tag: HWQ56_28800
so part of: sequence
location: 5793..6605
location: region:5793-6605:1
so has part: feature:5793-6605:1:exon
subclass of: SO_0000010

position:5793:1
position: 5793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6605:1
position: 6605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5793-6605:1:exon

HWQ56_RS28800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28800
old locus tag: HWQ56_28800
inference: COORDINATES: protein motif:HMM:NF015487.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrbG/VirB9 family P-type conjugative transfer protein
translation: MKLTPIAFALLLGCAWVHQASAAQTPVAAHQDKRVRFVDYDPYDIVTLKSRIGRDTLVMFSPDEKILDMGGGYTDAWGVGTITSRNGFFIKPQRGSPNTNIHIVTNKRVYNLDMVLAASNKEVSYEFVQFRYPEDELKQRRAKGQADLVKKMLAQGDGRAQNENYTVEGSTTIEPNRVVDNGLATYVTFPPRAKLPQIYYLNEEGKEVMASWNVENDVVVIHDVKPKFIFRSGELVTCIYNESYDPNGGERPATKTQSPHVERVLKEADQ
SIO_010081: HWQ56_RS28800
subclass of: SO_0000673
so part of: HWQ56_RS28800
location: 5793..6605
location: region:5793-6605:1
so has part: feature:5793-6605:1:exon

WP_176572508.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5793-6605:1:exon

HWQ56_RS28805
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28805
old locus tag: HWQ56_28805
so part of: sequence
location: 6602..7801
location: region:6602-7801:1
so has part: feature:6602-7801:1:exon
subclass of: SO_0000010

position:6602:1
position: 6602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7801:1
position: 7801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6602-7801:1:exon

HWQ56_RS28805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28805
old locus tag: HWQ56_28805
inference: COORDINATES: protein motif:HMM:NF015688.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrbI/VirB10 family protein
translation: MKMPWNRKDEYEEEDDEVVEQPIEGDRKIASVNKGLGIQARLMNIVGGVCIIAFGGWFLFHYYAGLYQERQEKKDRAVDTTQTASTQLPPLKVAALETPQQPAGQAAPPQPHIQAQAANGQPVKSPAQIEREERLSSSVKFKLDGTGPSLAQAASSNTAAGSQRGTGGQPGQGGQGLTGNPGDRLSQSLQSAQMDPVEAYRLGDPGLMVYQGEAIPCVVRPALDSSLVGMVQCVQSDDLWSADHSAIVAERGTIYTGQQLMGLARGNRRLPIVWTRGRTPMPNNVAFNLSSAATDELGRTGVTGDVDYHLAERWGPIVALSVIDDVGAYLQATQQSNSGNNTTLNLGNTTNGGQELATEIFKEAANIPNTLTRNQGANIYIYVARDIDFNKVYSLEYKQ
SIO_010081: HWQ56_RS28805
subclass of: SO_0000673
so part of: HWQ56_RS28805
location: 6602..7801
location: region:6602-7801:1
so has part: feature:6602-7801:1:exon

WP_176572509.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6602-7801:1:exon

HWQ56_RS28810
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
gene: virB11
locus tag: HWQ56_RS28810
old locus tag: HWQ56_28810
so part of: sequence
location: 7798..8871
location: region:7798-8871:1
so has part: feature:7798-8871:1:exon
subclass of: SO_0000010

position:7798:1
position: 7798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8871:1
position: 8871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7798-8871:1:exon

HWQ56_RS28810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
gene: virB11
locus tag: HWQ56_RS28810
old locus tag: HWQ56_28810
inference: COORDINATES: protein motif:HMM:TIGR02788.1
GO component: GO:0043684 - type IV secretion system complex [Evidence IEA]
GO process: GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type DNA transfer ATPase VirB11
translation: MNASCDEVLDEATAERLHTVEIHLQVLAGYLAGDYNELCINAPGELWTYTHGHWVPVSMPELDYVWCEELSRLVANFSGQTRQAIISAELPGEQRIEIVLPPVTEVPSITIRLPPKGKAFSLEDIISFGSFKRTEWVQTRGISAAERAELHGDLTAKELQLLELFNARDVTGFLCAAVVGKQNIFFVGETGSGKTALMNALGHKIPADERLVTVEDTRESRLPHRNQVNLKFSRDSAAPERIRVKGVLASTLRQFPSRVLLAEIRGDEAYFFFQNVVNSGHPGTMASFHANSPKMAFRRMANMIQASPEGSQLSQDLIIKDLYSLINIVIQCERDENGKPFVSQIYYDPEYAIKIAG
SIO_010081: HWQ56_RS28810
subclass of: SO_0000673
so part of: HWQ56_RS28810
location: 7798..8871
location: region:7798-8871:1
so has part: feature:7798-8871:1:exon

WP_176572510.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7798-8871:1:exon

HWQ56_RS28815
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28815
old locus tag: HWQ56_28815
so part of: sequence
location: 8882..10792
location: region:8882-10792:1
so has part: feature:8882-10792:1:exon
subclass of: SO_0000010

position:8882:1
position: 8882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10792:1
position: 10792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8882-10792:1:exon

HWQ56_RS28815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28815
old locus tag: HWQ56_28815
inference: COORDINATES: protein motif:HMM:NF014581.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
translation: MLLNELDSYKAKVSAFAALAALAVVMGLYLAGYFFLYKIGEHPYAATPKTIIDYWVYYGDQPLVKKWLSICSFAGFVPAIIVIGLCVAPINRKLHGDARFATTAEIKRNKLLGQHGFIIGKWKGKFLMLAGQLGALLAAPPRSGKGVGVVQPNMLSWPDSVVLLDVRQESFRLTSGFRATFSEVHLFNPVDPDLRTMQWNPLDYVSDDPMLRVNDLQKIGNMLSPDPADGDPFWPASCRTLFLGLALYVFETPSLPRTFGEIVRQIMFGEGETVGEHWKEIIETRDQSPTPLSSACKAALYDFIFTSGNTQSSIRKTFTAKLELWLNPLIDAATCRSSLDLRRMRRDKISVYIGIKPKDLDYLSLIINLFAQQIVELNMDQMPEDNPELKYQLGWIMDEFTAPGRMPVIAKAIGYLGGYNIRPFIIVQSISQLVATYGPEVAKTIIECLGAEIVYAPKNKEHARTVSEMLGDTTIKVKTHSRPKFDLKGGSTSTSEQKRALLLPQEVRQIGKKRQIVFIENMNAILCEKVFYYKEKVFKKRLLPPYVQPQAEYTPPPPRVAKPKPKPKADEVTEVNGQLVKFVDREIEVKDIDNLDKLSLTDYNIDFAKIEIPDNEPATDEEMKELFSSFVNSIAD
SIO_010081: HWQ56_RS28815
subclass of: SO_0000673
so part of: HWQ56_RS28815
location: 8882..10792
location: region:8882-10792:1
so has part: feature:8882-10792:1:exon

WP_176572511.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8882-10792:1:exon

HWQ56_RS28820
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28820
old locus tag: HWQ56_28820
so part of: sequence
location: 10811..13048
location: region:10811-13048:1
so has part: feature:10811-13048:1:exon
subclass of: SO_0000010

position:10811:1
position: 10811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13048:1
position: 13048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10811-13048:1:exon

HWQ56_RS28820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28820
old locus tag: HWQ56_28820
inference: COORDINATES: protein motif:HMM:NF037421.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LPD7 domain-containing protein
translation: MATKADKDGLVKALRENHVDTALAILDARKTLSPNMKEPLENGVPLLLSAVRGQLSTGEKFNGQMLLEGLVLRGVDVNMRLPSGKTALHETALTAQAARTLIEAGANLESKVSKSDLDAGQVKGETPLLAAIKAKNSDVAKVLIEAGANVNARDQDRVTPLHAAAAAKDGRTANLLIQAGADINARTGDKDNAITAVEALKENGIPLMAKVAAAVSARENSVENGQARDAEIDPEVVALVARQRTSLRQAAARSGAEPLPIQPIAPDLEQRAKLLETIEAAQAGRSEAFPIQPISPELDGQARDFATRRRTDLENQRAAPTLESADAEARLFAARQRERVRLERDNLGLDQRPRDSAPLIGAEGREADSPGKPIRFDKEAAQARAQTVPEHVKSRFVQVDNKFYFPDKSPAFDDKGQKLATKSENQEVIASMVDIAKARGWEKITVRGSEEFRRAAWLEASMNGLEVSGYKPTAIEKAHLAKLVKETAQENSIELGTERAKAAGSRSLTPPAGERGGPAQPAAAAAQSKAERPADLPRMKDFTMRDGAVSGQLIEHGKANYQFNDKKDPSYFVKVLTESGERTVWGKDLERAMRESQAKPGETIGLEKVDTKGVIAKEKVFDDQGQVVGSRDVDAIRNTWKVGSVDKAKAFVYGDRSEVVNKHPDLAPAYGTVAAAHKFAEATWPNNKEEQERFVAVAQLAMAERIAHGDPVPAPKLREAQVVKQQGKDREPAEPRKASQKEAAR
SIO_010081: HWQ56_RS28820
subclass of: SO_0000673
so part of: HWQ56_RS28820
location: 10811..13048
location: region:10811-13048:1
so has part: feature:10811-13048:1:exon

WP_176572512.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10811-13048:1:exon

HWQ56_RS28825
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28825
old locus tag: HWQ56_28825
so part of: sequence
location: 13045..13674
location: region:13045-13674:1
so has part: feature:13045-13674:1:exon
subclass of: SO_0000010

position:13045:1
position: 13045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13674:1
position: 13674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13045-13674:1:exon

HWQ56_RS28825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28825
old locus tag: HWQ56_28825
EC number: 4.2.2.n1
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002938261.1
GO function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lytic transglycosylase domain-containing protein
translation: MRGLTLAVLLSAALVAPGVASAGAQVEEQISTSVRAGLALAVSDQAAPEGSFLSVGAKDAWLNAQSPRLAEWVPNQAEREKLLLTVHYEAVRAGLDPEMVLGLLYVESRFRKYAVSSAGARGYMQVMPFWNKVVDRPGDNLFHLRTNLRYGCSILRHYLDAENGDVFMALGRYNGSRGQREYPDLVLKAWKRYQLPARPSPVTQYASAE
SIO_010081: HWQ56_RS28825
subclass of: SO_0000673
so part of: HWQ56_RS28825
location: 13045..13674
location: region:13045-13674:1
so has part: feature:13045-13674:1:exon

WP_176572513.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13045-13674:1:exon

HWQ56_RS28830
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28830
old locus tag: HWQ56_28830
so part of: sequence
location: complement(14023..14613)
location: region:14023-14613:-1
so has part: feature:14023-14613:-1:exon
subclass of: SO_0000010

position:14023:-1
position: 14023
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14613:-1
position: 14613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14023-14613:-1:exon

HWQ56_RS28830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28830
old locus tag: HWQ56_28830
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTDDKSTWQGTAAEDIDGIIWQGTASAVIEAIKADFSKITPHELSPDDIYDRLLSARREELAEWVPNIRDMGEDAFAVLMGVLLDRLGGDGIVTHGQPAIWLQVTPAVEKQLPDRYAGARRWIRLAAIEEVHPRPGIAVGEDIRTWQYVIQVSANGKTYDVSTVRYLGAAVDAPLERLLSLVSTAVSEENRRRAQL
SIO_010081: HWQ56_RS28830
subclass of: SO_0000673
so part of: HWQ56_RS28830
location: complement(14023..14613)
location: region:14023-14613:-1
so has part: feature:14023-14613:-1:exon

WP_176572514.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14023-14613:-1:exon

HWQ56_RS28835
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28835
old locus tag: HWQ56_28835
so part of: sequence
location: complement(14721..14951)
location: region:14721-14951:-1
so has part: feature:14721-14951:-1:exon
subclass of: SO_0000010

position:14721:-1
position: 14721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14951:-1
position: 14951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14721-14951:-1:exon

HWQ56_RS28835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28835
old locus tag: HWQ56_28835
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: DUF3717 domain-containing protein
translation: MTVTETATITRADLQNALVRCCDQHPASGNNHRLHPDASLMADLFGLMLHYHQSFTATADVDPAIIAAFERWNTAK
SIO_010081: HWQ56_RS28835
subclass of: SO_0000673
so part of: HWQ56_RS28835
location: complement(14721..14951)
location: region:14721-14951:-1
so has part: feature:14721-14951:-1:exon

WP_176572515.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14721-14951:-1:exon

HWQ56_RS28840
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28840
old locus tag: HWQ56_28840
so part of: sequence
location: complement(14974..15171)
location: region:14974-15171:-1
so has part: feature:14974-15171:-1:exon
subclass of: SO_0000010

position:14974:-1
position: 14974
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15171:-1
position: 15171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14974-15171:-1:exon

HWQ56_RS28840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28840
old locus tag: HWQ56_28840
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPTSHVEAAIERVKGTRVCDLAQLPFEDVQAFCTFQPSRFLDSLQFAFNQAKDHRPGAHGPRKDH
SIO_010081: HWQ56_RS28840
subclass of: SO_0000673
so part of: HWQ56_RS28840
location: complement(14974..15171)
location: region:14974-15171:-1
so has part: feature:14974-15171:-1:exon

WP_176572516.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14974-15171:-1:exon

HWQ56_RS28845
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28845
old locus tag: HWQ56_28845
so part of: sequence
location: complement(15414..16049)
location: region:15414-16049:-1
so has part: feature:15414-16049:-1:exon
subclass of: SO_0000010

position:15414:-1
position: 15414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16049:-1
position: 16049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15414-16049:-1:exon

HWQ56_RS28845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28845
old locus tag: HWQ56_28845
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017245859.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MINSQCRLYLRASTKDQDEQRALFALEQFAAQRELAIVATYADTISGTKLERPELRRLLEEAAHGDVLLCESVDRLSRLTHADWRRLRQMIEDKGMRLVVADLPTTHMLIGGNDITGQFLTIINDLLLDLMATQARIDQEKRVERIREGLANKRRRGEKVGGRGRNQDKWTAIERRLKENLAMADIAKLCDVGIATVYRVRAELNKKSISV
SIO_010081: HWQ56_RS28845
subclass of: SO_0000673
so part of: HWQ56_RS28845
location: complement(15414..16049)
location: region:15414-16049:-1
so has part: feature:15414-16049:-1:exon

WP_176572517.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15414-16049:-1:exon

HWQ56_RS28850
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28850
old locus tag: HWQ56_28850
so part of: sequence
location: complement(16661..16996)
location: region:16661-16996:-1
so has part: feature:16661-16996:-1:exon
subclass of: SO_0000010

position:16661:-1
position: 16661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16996:-1
position: 16996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16661-16996:-1:exon

HWQ56_RS28850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28850
old locus tag: HWQ56_28850
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSNEHDEYVTVQVKVVPKEDAIKSLAVWQMKGYDNLLEIVRMFDQDDGSVTVGFMDYSFGEDLFFVPEHMNRTYKKRQHALGAVGAMFDELIKWNALMDEIHAAIPQQANS
SIO_010081: HWQ56_RS28850
subclass of: SO_0000673
so part of: HWQ56_RS28850
location: complement(16661..16996)
location: region:16661-16996:-1
so has part: feature:16661-16996:-1:exon

WP_176572518.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16661-16996:-1:exon

HWQ56_RS28855
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28855
old locus tag: HWQ56_28855
so part of: sequence
location: complement(17010..17252)
location: region:17010-17252:-1
so has part: feature:17010-17252:-1:exon
subclass of: SO_0000010

position:17010:-1
position: 17010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17252:-1
position: 17252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17010-17252:-1:exon

HWQ56_RS28855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28855
old locus tag: HWQ56_28855
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTSDVIDYLAGRKTQELQLWHSLLEDDKAAWYRPEFQHASLRKHAEVLHRFGIIDGVELIELNELADARYGHAVELMKSC
SIO_010081: HWQ56_RS28855
subclass of: SO_0000673
so part of: HWQ56_RS28855
location: complement(17010..17252)
location: region:17010-17252:-1
so has part: feature:17010-17252:-1:exon

WP_176572519.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17010-17252:-1:exon

HWQ56_RS28860
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28860
old locus tag: HWQ56_28860
so part of: sequence
location: complement(17242..17574)
location: region:17242-17574:-1
so has part: feature:17242-17574:-1:exon
subclass of: SO_0000010

position:17242:-1
position: 17242
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17574:-1
position: 17574
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17242-17574:-1:exon

HWQ56_RS28860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28860
old locus tag: HWQ56_28860
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKRRDSLVLHFSNDVKTLLTIPCDSGDSIEVFGDPENASYEWRLVDEAGLVEQHSDCGYGLPAIALRDGLIAFYGLPQHGTQHVDFRPAKGKLLRQGDLPQALLRKENDE
SIO_010081: HWQ56_RS28860
subclass of: SO_0000673
so part of: HWQ56_RS28860
location: complement(17242..17574)
location: region:17242-17574:-1
so has part: feature:17242-17574:-1:exon

WP_176572520.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17242-17574:-1:exon

HWQ56_RS28865
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28865
old locus tag: HWQ56_28865
so part of: sequence
location: complement(17561..17809)
location: region:17561-17809:-1
so has part: feature:17561-17809:-1:exon
subclass of: SO_0000010

position:17561:-1
position: 17561
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17809:-1
position: 17809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17561-17809:-1:exon

HWQ56_RS28865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28865
old locus tag: HWQ56_28865
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKPKLSIGQILLAWVNIIVGGGTAALGAWAFTVTLTDWDFKLSLYYLFAIVFGAYFARSGWRKARPSRIPTPKKVEVENETP
SIO_010081: HWQ56_RS28865
subclass of: SO_0000673
so part of: HWQ56_RS28865
location: complement(17561..17809)
location: region:17561-17809:-1
so has part: feature:17561-17809:-1:exon

WP_176572521.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17561-17809:-1:exon

HWQ56_RS28870
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28870
old locus tag: HWQ56_28870
so part of: sequence
location: complement(17963..19006)
location: region:17963-19006:-1
so has part: feature:17963-19006:-1:exon
subclass of: SO_0000010

position:17963:-1
position: 17963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19006:-1
position: 19006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17963-19006:-1:exon

HWQ56_RS28870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28870
old locus tag: HWQ56_28870
inference: COORDINATES: protein motif:HMM:NF015397.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
translation: MATNDAGGFSREEEHSIEFAFGHKRPKGQRLKLGKAGAKAQAWRTVTKAPEVIVRVSGGGKTAQHVKAHFDYITRRGQLEMVNDQGETIRGKDQVADLFDSWDMDLSKGQGELRQAFNVVLSMPAGTDPQKVLAAAQGFARETLYGKHQYAMVLHTQETDPHKDAPPHPHVHLIIKAEGYNGKRLHIRKATLQAWRETFAEQLRDRGIEANATPRAVRGVTKKSKGVALFHLEKKHGREESHVYRAKVEEAIKELNAGTQELKPWEKAIINRRQKTLREMLQAAKTYEAEGDKELADAIRKHAASLPRPETERHAIKAEVAQELQRIRDQGKQRGPEAARGDKDKER
SIO_010081: HWQ56_RS28870
subclass of: SO_0000673
so part of: HWQ56_RS28870
location: complement(17963..19006)
location: region:17963-19006:-1
so has part: feature:17963-19006:-1:exon

WP_176572522.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17963-19006:-1:exon

HWQ56_RS28875
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28875
old locus tag: HWQ56_28875
so part of: sequence
location: complement(18993..19550)
location: region:18993-19550:-1
so has part: feature:18993-19550:-1:exon
subclass of: SO_0000010

position:18993:-1
position: 18993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19550:-1
position: 19550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18993-19550:-1:exon

HWQ56_RS28875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28875
old locus tag: HWQ56_28875
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: plasmid mobilization relaxosome protein MobC
translation: MPSKKPMLSARVEADTKSLFDQRAASLNMTTAALLEKLVEAYLQKAPPEPPPLVTLSDPAKGKAKAWVDVPLAPSEGKALDELAGAMGWPRSKYLAQLFRVHLSAEPRFSEKEMLELRQVTMQLAALGRNVNQVARALNVSLDNANQAHAVQWEVMHRVIDVHRKYVKALVKGNLDYWGMNDGDE
SIO_010081: HWQ56_RS28875
subclass of: SO_0000673
so part of: HWQ56_RS28875
location: complement(18993..19550)
location: region:18993-19550:-1
so has part: feature:18993-19550:-1:exon

WP_176572523.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18993-19550:-1:exon

HWQ56_RS28880
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28880
old locus tag: HWQ56_28880
so part of: sequence
location: 20178..20891
location: region:20178-20891:1
so has part: feature:20178-20891:1:exon
subclass of: SO_0000010

position:20178:1
position: 20178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20891:1
position: 20891
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20178-20891:1:exon

HWQ56_RS28880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28880
old locus tag: HWQ56_28880
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013802322.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SprT-like domain-containing protein
translation: MIPTKDAYDELDRAYAHFNAELFGGQLPTCLITLQREKKTYGYFSASRFINQVDKSFTDEIALNPAYFGVVSLKEIMQTVVHEMVHLWQHHFGKPGRRRYHNREWGEKMKAVGLMPSDTGKPGGKQTGERMADYAIEGGVFEQALEKLVATSYRITWLDNNPGRHVDAAALQAALEGMVDGVDPANILAPAGTAAPVPTKPTRAKYTCACEINVWAKPGLNLICGECSQRFAEADPA
SIO_010081: HWQ56_RS28880
subclass of: SO_0000673
so part of: HWQ56_RS28880
location: 20178..20891
location: region:20178-20891:1
so has part: feature:20178-20891:1:exon

WP_176572533.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20178-20891:1:exon

HWQ56_RS28885
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28885
old locus tag: HWQ56_28885
so part of: sequence
location: 20983..21504
location: region:20983-21504:1
so has part: feature:20983-21504:1:exon
subclass of: SO_0000010

position:20983:1
position: 20983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21504:1
position: 21504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20983-21504:1:exon

HWQ56_RS28885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28885
old locus tag: HWQ56_28885
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEIPERKTLLALYESDISKAYDDLLKAFLDYLADGVGDLRSMAGRCGAQCSAAHKRCKRGLVFAALASAQAEGLDITPTVAEHLCSRLLGRGVDFRAALSSFGTPGRTAANKSATGAADLATLETALSPEIFSLLVAMDGIRDRYRGQYDERAKDAAQAAGKLAAQQAKQTRR
SIO_010081: HWQ56_RS28885
subclass of: SO_0000673
so part of: HWQ56_RS28885
location: 20983..21504
location: region:20983-21504:1
so has part: feature:20983-21504:1:exon

WP_176572524.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20983-21504:1:exon

HWQ56_RS28890
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28890
old locus tag: HWQ56_28890
so part of: sequence
location: complement(21706..21972)
location: region:21706-21972:-1
so has part: feature:21706-21972:-1:exon
subclass of: SO_0000010

position:21706:-1
position: 21706
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21972:-1
position: 21972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21706-21972:-1:exon

HWQ56_RS28890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28890
old locus tag: HWQ56_28890
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKAHDAVTSSARLAAFSLLSLIRPVVVGLLEFLAAISLFGFLACALFGQWFVFTVLLVTGVVATALCWSYDALLSRLVPFNYGLLSDG
SIO_010081: HWQ56_RS28890
subclass of: SO_0000673
so part of: HWQ56_RS28890
location: complement(21706..21972)
location: region:21706-21972:-1
so has part: feature:21706-21972:-1:exon

WP_176572525.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21706-21972:-1:exon

HWQ56_RS28895
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28895
old locus tag: HWQ56_28895
so part of: sequence
location: complement(21959..22978)
location: region:21959-22978:-1
so has part: feature:21959-22978:-1:exon
subclass of: SO_0000010

position:21959:-1
position: 21959
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22978:-1
position: 22978
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21959-22978:-1:exon

HWQ56_RS28895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28895
old locus tag: HWQ56_28895
inference: COORDINATES: protein motif:HMM:TIGR00180.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParB/RepB/Spo0J family partition protein
translation: MAKKLDLLGLADFGQAPAPAAAGEDGQVIEVAVDDVIPDPAQPRKKFDPVKLQKLADVIKASRLNQPVTVRPKNADGKYVIGLGERRWRACKIAGLATLPVRISAQIDYYDQVTENTEQEPLTIMEEARFIAWRVAEGDKKSLIAKRLGMRADTVSQLLALATAPEFIQVLGDEKAIGGRTLYELVQAHKEFPAEVERYAQGEEITRAGVGRLLEQLRSREAQALIDAEAKAGQQHNDQSTNQDTKPPKVEGDRDKERPLDLDNPNEKPAGPAQPAAAAQQQASAPGGAKVKILVNGRAATLAQAGLVQVVYADTGEIVEVELSTVQIVGVEETDNESS
SIO_010081: HWQ56_RS28895
subclass of: SO_0000673
so part of: HWQ56_RS28895
location: complement(21959..22978)
location: region:21959-22978:-1
so has part: feature:21959-22978:-1:exon

WP_176572526.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21959-22978:-1:exon

HWQ56_RS28900
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28900
old locus tag: HWQ56_28900
so part of: sequence
location: complement(22971..23780)
location: region:22971-23780:-1
so has part: feature:22971-23780:-1:exon
subclass of: SO_0000010

position:22971:-1
position: 22971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23780:-1
position: 23780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22971-23780:-1:exon

HWQ56_RS28900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28900
old locus tag: HWQ56_28900
inference: COORDINATES: protein motif:HMM:NF013793.2
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MNIPRRFKQKAWANQKGGSGKSMLSYNDAFYLAESGYRTLYLDGDEQGNGSKPLGEFAVPGMVSSDLFQARPLEPIEIVEGQNLYVLMADKPGLIKAERSALEDDEMVDLVRAQVARIARDFDYVVVDTAGSNSRIANSLLVSSDFVAIPCRIDSYSIDVAKDVLSRVAFIQQQWNPQLVSFGIVPNEFDATQPAQIDWLKQLMTHYRKHLFGGYVRKSGAYKEAAAEGVPVWRLMDEKGRVKTAARTAGKEVRVVFEMMHKQMEQAHG
SIO_010081: HWQ56_RS28900
subclass of: SO_0000673
so part of: HWQ56_RS28900
location: complement(22971..23780)
location: region:22971-23780:-1
so has part: feature:22971-23780:-1:exon

WP_176572527.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22971-23780:-1:exon

HWQ56_RS28905
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28905
old locus tag: HWQ56_28905
so part of: sequence
location: complement(23794..24099)
location: region:23794-24099:-1
so has part: feature:23794-24099:-1:exon
subclass of: SO_0000010

position:23794:-1
position: 23794
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24099:-1
position: 24099
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23794-24099:-1:exon

HWQ56_RS28905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28905
old locus tag: HWQ56_28905
inference: COORDINATES: protein motif:HMM:NF027824.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrfB-related DNA-binding protein
translation: MRRKERLTPQDFDTLKVHMGSRWKAANIEAVRRVMVEGCKQRDIAADLGVTEKAVSQMVKKAYDLHQEHGTVPEGWVSVFATLPRTWPNWSRPWNKKRGQP
SIO_010081: HWQ56_RS28905
subclass of: SO_0000673
so part of: HWQ56_RS28905
location: complement(23794..24099)
location: region:23794-24099:-1
so has part: feature:23794-24099:-1:exon

WP_245217908.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23794-24099:-1:exon

HWQ56_RS28910
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28910
old locus tag: HWQ56_28910
so part of: sequence
location: complement(25549..26151)
location: region:25549-26151:-1
so has part: feature:25549-26151:-1:exon
subclass of: SO_0000010

position:25549:-1
position: 25549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26151:-1
position: 26151
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25549-26151:-1:exon

HWQ56_RS28910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28910
old locus tag: HWQ56_28910
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004086728.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LPD29 domain-containing protein
translation: MTTKHLTCADTAKLVRKALKESFPDVRFSVRSHTFSMGASITVAWTDGPNAKQVEAVTCRFQASYFDGGIDYKGSIYHMMHGETVSFGADSINACRTVSDASVEQAIDRVYRNLRSNFREGGIAKPTVEAFRAGQLWATVLPSYHLNAGDSLQSEICASINRHSDRLRGLVSQTAQSVFVTHDDGYSRQCGSGYSAVTIQ
SIO_010081: HWQ56_RS28910
subclass of: SO_0000673
so part of: HWQ56_RS28910
location: complement(25549..26151)
location: region:25549-26151:-1
so has part: feature:25549-26151:-1:exon

WP_176572528.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25549-26151:-1:exon

HWQ56_RS28915
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28915
old locus tag: HWQ56_28915
so part of: sequence
location: 26380..27306
location: region:26380-27306:1
so has part: feature:26380-27306:1:exon
subclass of: SO_0000010

position:26380:1
position: 26380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27306:1
position: 27306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26380-27306:1:exon

HWQ56_RS28915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28915
old locus tag: HWQ56_28915
inference: COORDINATES: protein motif:HMM:NF024554.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006260 - DNA replication [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3991 and TOPRIM domain-containing protein
translation: MEKSDIEKARSIELADVIEGFGGIRDPADPKNNWKTHAGRLTVTGQKFYNHDLDKGGGGAIDLAMHLGGYGFKDAVAWLGGTHGHEAAVQTYQAEARQQATRILETTPKPKLEIPPPDPRKLAKVQSYLTNTRQIPEQIVNTAIEKGRVWADNYGNAVFGLRHLDGKITGAELRGTYSRPFHGIRGDRGLYFTGKAASKVAVFVESSIEAMSYQALNPEALVIGTAGSTRDILQGAAKHLEAQGYKIVDGFNADKAGDRLGDRLKQAVSQDVERQRPTAGKDWNIELKAVRAAMKDQAQGKPEAEPER
SIO_010081: HWQ56_RS28915
subclass of: SO_0000673
so part of: HWQ56_RS28915
location: 26380..27306
location: region:26380-27306:1
so has part: feature:26380-27306:1:exon

WP_176572529.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26380-27306:1:exon

HWQ56_RS28920
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28920
old locus tag: HWQ56_28920
so part of: sequence
location: 27430..27954
location: region:27430-27954:1
so has part: feature:27430-27954:1:exon
subclass of: SO_0000010

position:27430:1
position: 27430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27954:1
position: 27954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27430-27954:1:exon

HWQ56_RS28920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28920
old locus tag: HWQ56_28920
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKLAPFAFLAAMCAACALTTIAHAETYPVVADATQQDRDAQRRSILANELATEKKSLSDANADMAAAIKAQKSPDEVQAIAAQALGHSNNIESLQRELDGLGTKTARPRRSAFVPEAQPEAPAPSAQAPAEVPYWDVYHRKQNVPPVAPDDLNAGAALNSPDAGDKEARSGSTK
SIO_010081: HWQ56_RS28920
subclass of: SO_0000673
so part of: HWQ56_RS28920
location: 27430..27954
location: region:27430-27954:1
so has part: feature:27430-27954:1:exon

WP_176572530.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27430-27954:1:exon

HWQ56_RS28925
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28925
old locus tag: HWQ56_28925
so part of: sequence
location: 28082..28339
location: region:28082-28339:1
so has part: feature:28082-28339:1:exon
subclass of: SO_0000010

position:28082:1
position: 28082
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28339:1
position: 28339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28082-28339:1:exon

HWQ56_RS28925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28925
old locus tag: HWQ56_28925
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFEDQLEDAAKNTAIRQFIVRQMTPAKFGLVVILTWKEGENVLFNARKQARLWPNLNTLVGYIRGLQCRQTPITLELDYDSTDDS
SIO_010081: HWQ56_RS28925
subclass of: SO_0000673
so part of: HWQ56_RS28925
location: 28082..28339
location: region:28082-28339:1
so has part: feature:28082-28339:1:exon

WP_176572531.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28082-28339:1:exon

HWQ56_RS28930
type: Gene
subclass of: SO_0000704
RO_0002162: 2599595
locus tag: HWQ56_RS28930
old locus tag: HWQ56_28930
so part of: sequence
location: 28317..28643
location: region:28317-28643:1
so has part: feature:28317-28643:1:exon
subclass of: SO_0000010

position:28317:1
position: 28317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28643:1
position: 28643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28317-28643:1:exon

HWQ56_RS28930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2599595
locus tag: HWQ56_RS28930
old locus tag: HWQ56_28930
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020723402.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrbC/VirB2 family protein
translation: MTVQTTADTLSRTKAVNRRLLAFMAAVIGSIFPALAMASNPFTTGATGLSSDTLAMLTPVAGIAVMAVGLLALFGRIHWMWLVGTIVGIVLVFGSDQIVTWIRGLFGV
SIO_010081: HWQ56_RS28930
subclass of: SO_0000673
so part of: HWQ56_RS28930
location: 28317..28643
location: region:28317-28643:1
so has part: feature:28317-28643:1:exon

WP_245217909.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28317-28643:1:exon