Pseudomonas eucalypticola strain NP-1 plasmid pPENP1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
Pseudomonas eucalypticola sp. nov., an endophyte of Eucalyptus dunnii leaves with biocontrol ability of eucalyptus leaf blight
Submitted (16-JUN-2020) Forestry Protection, Fujian Agriculture and Forestry University, Shangxiadian Road, Fuzhou, Fujian 350002, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP056031.1.\nBacteria and source DNA available from Institute of Forestry\nProtection in Fujian Agriculture and Forestry University.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: MAY-2018\nAssembly Method :: SMRT portal v. v3.2.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 120.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/29/2023 03:10:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,809\nCDSs (total) :: 5,697\nGenes (coding) :: 5,616\nCDSs (with protein) :: 5,616\nGenes (RNA) :: 112\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 83\nncRNAs :: 4\nPseudo Genes (total) :: 81\nCDSs (without protein) :: 81\nPseudo Genes (ambiguous residues) :: 0 of 81\nPseudo Genes (frameshifted) :: 34 of 81\nPseudo Genes (incomplete) :: 46 of 81\nPseudo Genes (internal stop) :: 15 of 81\nPseudo Genes (multiple problems) :: 13 of 81\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Pseudomonas eucalypticola
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
VirB3 family type IV secretion system protein
COORDINATES: protein motif:HMM:NF015118.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF040179.1
COORDINATES: protein motif:HMM:NF019608.2
COORDINATES: protein motif:HMM:NF016491.2
COORDINATES: protein motif:HMM:NF016238.2
COORDINATES: protein motif:HMM:NF015487.2
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: protein motif:HMM:NF015688.2
COORDINATES: protein motif:HMM:TIGR02788.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF037421.2
COORDINATES: similar to AA sequence:RefSeq:WP_002938261.1
GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017245859.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_013802322.1
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF027824.2
COORDINATES: similar to AA sequence:RefSeq:WP_004086728.1
COORDINATES: protein motif:HMM:NF024554.2
GO:0006260 - DNA replication [Evidence IEA]
DUF3991 and TOPRIM domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020723402.1