Crassaminicella thermophila strain SY095 plasmid pCT01, complete sequence.
Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Crassaminicella.
Complete genome of Crassaminicella thermophila SY095
Submitted (26-JUL-2019) Laboratory of Deep Sea Microbial Cell Biology, Institute of Deep-Sea Science and Engineering, CAS, luhuitou Rd28, Sanya, Hainan 572000, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP042244.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 1.7\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 950.0x\nSequencing Technology :: Oxford Nanopore GridION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 01/04/2023 02:03:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,219\nCDSs (total) :: 3,046\nGenes (coding) :: 2,977\nCDSs (with protein) :: 2,977\nGenes (RNA) :: 173\nrRNAs :: 12, 11, 11 (5S, 16S, 23S)\ncomplete rRNAs :: 12, 11, 11 (5S, 16S, 23S)\ntRNAs :: 135\nncRNAs :: 4\nPseudo Genes (total) :: 69\nCDSs (without protein) :: 69\nPseudo Genes (ambiguous residues) :: 0 of 69\nPseudo Genes (frameshifted) :: 37 of 69\nPseudo Genes (incomplete) :: 33 of 69\nPseudo Genes (internal stop) :: 10 of 69\nPseudo Genes (multiple problems) :: 11 of 69\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Crassaminicella thermophila
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014418202.1
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017826175.1
COORDINATES: similar to AA sequence:RefSeq:WP_016208527.1
phage terminase small subunit P27 family
COORDINATES: similar to AA sequence:RefSeq:WP_011100286.1
COORDINATES: similar to AA sequence:RefSeq:WP_011100285.1
GO:0044423 - virion component [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011100284.1
COORDINATES: similar to AA sequence:RefSeq:WP_013524419.1
COORDINATES: similar to AA sequence:RefSeq:WP_013876414.1
COORDINATES: similar to AA sequence:RefSeq:WP_000244595.1
GO:0016032 - viral process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012063546.1
COORDINATES: protein motif:HMM:NF016754.2
COORDINATES: similar to AA sequence:RefSeq:WP_012063549.1
phage tail sheath C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015891219.1
COORDINATES: protein motif:HMM:NF020464.2
COORDINATES: similar to AA sequence:RefSeq:WP_010260774.1
COORDINATES: protein motif:HMM:NF022300.2
COORDINATES: protein motif:HMM:NF022387.2
COORDINATES: similar to AA sequence:RefSeq:WP_009168733.1
COORDINATES: similar to AA sequence:RefSeq:WP_015358144.1
COORDINATES: protein motif:HMM:NF015371.2
COORDINATES: protein motif:HMM:NF013661.2
peptidoglycan recognition family protein
COORDINATES: protein motif:HMM:NF022236.2
COORDINATES: protein motif:HMM:NF024835.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF033832.1
COORDINATES: protein motif:HMM:NF025708.2
COORDINATES: similar to AA sequence:RefSeq:WP_013430187.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009330104.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014521360.1
COORDINATES: similar to AA sequence:RefSeq:WP_012159143.1
COORDINATES: similar to AA sequence:RefSeq:WP_007495879.1
COORDINATES: similar to AA sequence:RefSeq:WP_003474123.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF022027.2
COORDINATES: similar to AA sequence:RefSeq:WP_012099397.1
COORDINATES: protein motif:HMM:NF024637.2
COORDINATES: protein motif:HMM:NF020945.2
GO:0043937 - regulation of sporulation [Evidence IEA]
Spo0E family sporulation regulatory protein-aspartic acid phosphatase
COORDINATES: protein motif:HMM:NF016302.2
COORDINATES: similar to AA sequence:RefSeq:WP_012062110.1
RusA family crossover junction endodeoxyribonuclease
COORDINATES: protein motif:HMM:NF028094.2
COORDINATES: protein motif:HMM:NF016159.2
COORDINATES: similar to AA sequence:RefSeq:WP_008799909.1
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011971185.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]