Qingshengfaniella alkalisoli strain LN3S51 plasmid unnamed3, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Qingshengfaniella.
Litoreibacter alkalisoli sp. nov., isolated from saline-alkaline soil
Submitted (26-JUL-2019) School of Ecology and Environment, Inner Mongolia University, Daxuexijie #235, Hohhot, Inner Mongolia 010021, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP042264.1.\nBacteria and source DNA available from Ji-Quan Sun.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2019\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 30.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/28/2023 03:44:49\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,809\nCDSs (total) :: 3,747\nGenes (coding) :: 3,628\nCDSs (with protein) :: 3,628\nGenes (RNA) :: 62\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 119\nCDSs (without protein) :: 119\nPseudo Genes (ambiguous residues) :: 0 of 119\nPseudo Genes (frameshifted) :: 55 of 119\nPseudo Genes (incomplete) :: 78 of 119\nPseudo Genes (internal stop) :: 18 of 119\nPseudo Genes (multiple problems) :: 30 of 119\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Qingshengfaniella alkalisoli
COORDINATES: similar to AA sequence:RefSeq:WP_007121354.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007121353.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010393587.1
amino acid adenylation domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019462237.1
COORDINATES: similar to AA sequence:RefSeq:WP_003163699.1
COORDINATES: similar to AA sequence:RefSeq:WP_011748846.1
COORDINATES: protein motif:HMM:NF012958.2
COORDINATES: protein motif:HMM:NF024808.2
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008837262.1
COORDINATES: similar to AA sequence:RefSeq:WP_020512736.1
COORDINATES: similar to AA sequence:RefSeq:WP_018302352.1
COORDINATES: similar to AA sequence:RefSeq:WP_012568848.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_010306917.1
Tm-1-like ATP-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011815345.1
phosphoenolpyruvate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014239647.1
COORDINATES: protein motif:HMM:NF020927.2
COORDINATES: similar to AA sequence:RefSeq:WP_010875239.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240312.1
COORDINATES: similar to AA sequence:RefSeq:WP_011455246.1
COORDINATES: similar to AA sequence:RefSeq:WP_008595058.1
COORDINATES: similar to AA sequence:RefSeq:WP_010140643.1
COORDINATES: similar to AA sequence:RefSeq:WP_011455243.1
iron-siderophore ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008330882.1
COORDINATES: similar to AA sequence:RefSeq:WP_007797586.1
COORDINATES: similar to AA sequence:RefSeq:WP_008888980.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019949809.1
COORDINATES: similar to AA sequence:RefSeq:WP_019017345.1
COORDINATES: similar to AA sequence:RefSeq:WP_019017344.1
COORDINATES: similar to AA sequence:RefSeq:WP_012333516.1
COORDINATES: similar to AA sequence:RefSeq:WP_009816682.1
COORDINATES: protein motif:HMM:NF016999.2
COORDINATES: similar to AA sequence:RefSeq:WP_009811305.1
COORDINATES: similar to AA sequence:RefSeq:WP_006470719.1
COORDINATES: similar to AA sequence:RefSeq:WP_009811303.1
COORDINATES: similar to AA sequence:RefSeq:WP_007797935.1
COORDINATES: similar to AA sequence:RefSeq:WP_009818296.1
COORDINATES: similar to AA sequence:RefSeq:WP_009572309.1
PotD/PotF family extracellular solute-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_005864365.1
COORDINATES: similar to AA sequence:RefSeq:WP_011910551.1
COORDINATES: similar to AA sequence:RefSeq:WP_008884755.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005852679.1
COORDINATES: protein motif:HMM:NF012911.2
COORDINATES: similar to AA sequence:RefSeq:WP_017968618.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007825580.1
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_008883702.1
glutathione S-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008532560.1
COORDINATES: similar to AA sequence:RefSeq:WP_018326160.1
BMP family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007791821.1
COORDINATES: similar to AA sequence:RefSeq:WP_018063025.1
COORDINATES: similar to AA sequence:RefSeq:WP_008532554.1
COORDINATES: similar to AA sequence:RefSeq:WP_005863198.1
GO:0019104 - DNA N-glycosylase activity [Evidence IEA]
GO:0036297 - interstrand cross-link repair [Evidence IEA]
crosslink repair DNA glycosylase YcaQ family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009826361.1
COORDINATES: similar to AA sequence:RefSeq:WP_009826362.1
COORDINATES: similar to AA sequence:RefSeq:WP_014332755.1
GO:0004038 - allantoinase activity [Evidence IEA]; GO:0050897 - cobalt ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0000256 - allantoin catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010142231.1
COORDINATES: similar to AA sequence:RefSeq:WP_010142232.1
COORDINATES: similar to AA sequence:RefSeq:WP_011483133.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0005488 - binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
DctP family TRAP transporter solute-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007256070.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007256071.1
COORDINATES: protein motif:HMM:NF036578.2
COORDINATES: similar to AA sequence:RefSeq:WP_009756467.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013652119.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0015556 - C4-dicarboxylate transmembrane transporter activity [Evidence IEA]
GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013652118.1
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: protein motif:HMM:NF013989.2
COORDINATES: similar to AA sequence:RefSeq:WP_018327952.1
COORDINATES: similar to AA sequence:RefSeq:WP_011969499.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013188.2
COORDINATES: protein motif:HMM:NF013250.2
GO:0016780 - phosphotransferase activity, for other substituted phosphate groups [Evidence IEA]
GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
CDP-alcohol phosphatidyltransferase family protein
COORDINATES: protein motif:HMM:NF015651.2
lysylphosphatidylglycerol synthase transmembrane domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_018246732.1
COORDINATES: similar to AA sequence:RefSeq:WP_019955710.1
COORDINATES: similar to AA sequence:RefSeq:WP_018181825.1
COORDINATES: similar to AA sequence:RefSeq:WP_019955708.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750582.1
COORDINATES: protein motif:HMM:NF012862.2
COORDINATES: protein motif:HMM:NF024917.2
COORDINATES: similar to AA sequence:RefSeq:WP_010392755.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001022.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013762241.1
COORDINATES: similar to AA sequence:RefSeq:WP_003498880.1
COORDINATES: similar to AA sequence:RefSeq:WP_011583085.1
COORDINATES: similar to AA sequence:RefSeq:WP_020043462.1
COORDINATES: similar to AA sequence:RefSeq:WP_011337987.1
COORDINATES: similar to AA sequence:RefSeq:WP_014329271.1
COORDINATES: similar to AA sequence:RefSeq:WP_006937304.1
COORDINATES: similar to AA sequence:RefSeq:WP_006325938.1
COORDINATES: similar to AA sequence:RefSeq:WP_019400836.1
COORDINATES: protein motif:HMM:NF012589.2
GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_007120397.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020040928.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015496440.1
COORDINATES: similar to AA sequence:RefSeq:WP_019964723.1
COORDINATES: similar to AA sequence:RefSeq:WP_006931451.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_006931448.1
COORDINATES: similar to AA sequence:RefSeq:WP_011568511.1
COORDINATES: similar to AA sequence:RefSeq:WP_008192124.1
TRAP transporter substrate-binding protein DctP
COORDINATES: similar to AA sequence:RefSeq:WP_009175313.1
COORDINATES: similar to AA sequence:RefSeq:WP_009805449.1
GO:0070403 - NAD+ binding [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010336636.1
COORDINATES: similar to AA sequence:RefSeq:WP_018301302.1
COORDINATES: similar to AA sequence:RefSeq:WP_018701043.1
COORDINATES: similar to AA sequence:RefSeq:WP_008226364.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018066196.1
COORDINATES: similar to AA sequence:RefSeq:WP_019995500.1
COORDINATES: similar to AA sequence:RefSeq:WP_013895053.1
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009810004.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_008621156.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006931669.1
GO:0008743 - L-threonine 3-dehydrogenase activity [Evidence IEA]
GO:0006567 - threonine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011337442.1
GO:0008890 - glycine C-acetyltransferase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011566551.1
COORDINATES: similar to AA sequence:RefSeq:WP_008598162.1
COORDINATES: similar to AA sequence:RefSeq:WP_008884591.1
COORDINATES: similar to AA sequence:RefSeq:WP_008598164.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807655.1
COORDINATES: similar to AA sequence:RefSeq:WP_008598166.1
GO:0016655 - oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor [Evidence IEA]
GO:0006814 - sodium ion transport [Evidence IEA]
Na(+)-translocating NADH-quinone reductase subunit A
COORDINATES: similar to AA sequence:RefSeq:WP_011537031.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016655 - oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor [Evidence IEA]
GO:0022904 - respiratory electron transport chain [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
NADH:ubiquinone reductase (Na(+)-transporting) subunit B
COORDINATES: similar to AA sequence:RefSeq:WP_010441336.1
Na(+)-translocating NADH-quinone reductase subunit C
COORDINATES: similar to AA sequence:RefSeq:WP_008208348.1
NADH:ubiquinone reductase (Na(+)-transporting) subunit D
COORDINATES: similar to AA sequence:RefSeq:NP_251685.1
NADH:ubiquinone reductase (Na(+)-transporting) subunit E
COORDINATES: similar to AA sequence:RefSeq:WP_019296951.1
NADH:ubiquinone reductase (Na(+)-transporting) subunit F
COORDINATES: similar to AA sequence:RefSeq:WP_017928804.1
COORDINATES: protein motif:HMM:NF012967.2
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015437.2
autoinducer binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008887372.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010629538.1
COORDINATES: similar to AA sequence:RefSeq:WP_005613839.1
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010629540.1
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007088309.1
tripartite tricarboxylate transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_008889008.1
GO:0008777 - acetylornithine deacetylase activity [Evidence IEA]
GO:0006592 - ornithine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF033563.0
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012422.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018139072.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: similar to AA sequence:RefSeq:WP_018139069.1
COORDINATES: similar to AA sequence:RefSeq:WP_019956125.1
COORDINATES: similar to AA sequence:RefSeq:WP_017140509.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009175873.1
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF025611.2
COORDINATES: similar to AA sequence:RefSeq:WP_019863196.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967146.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018066832.1
COORDINATES: similar to AA sequence:RefSeq:WP_018066833.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011970147.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967142.1
COORDINATES: similar to AA sequence:RefSeq:WP_018066836.1
COORDINATES: similar to AA sequence:RefSeq:WP_018066837.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_018301003.1
COORDINATES: protein motif:HMM:NF024771.2
GO:0010468 - regulation of gene expression [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009603866.1
4-hydroxythreonine-4-phosphate dehydrogenase PdxA
COORDINATES: similar to AA sequence:RefSeq:WP_009467758.1
COORDINATES: similar to AA sequence:RefSeq:WP_011242023.1
COORDINATES: similar to AA sequence:RefSeq:WP_012179112.1
COORDINATES: similar to AA sequence:RefSeq:WP_009467761.1
COORDINATES: protein motif:HMM:NF018979.2
COORDINATES: similar to AA sequence:RefSeq:WP_009467763.1
COORDINATES: protein motif:HMM:NF013258.2
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_028713484.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024800.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008957263.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611156.1
COORDINATES: similar to AA sequence:RefSeq:WP_007674967.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015527.2
GO:0008146 - sulfotransferase activity [Evidence IEA]
sulfotransferase family 2 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006466070.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612253.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008552701.1
GO:0008804 - carbamate kinase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009483423.1
GO:0016597 - amino acid binding [Evidence IEA]; GO:0004585 - ornithine carbamoyltransferase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]; GO:0006591 - ornithine metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014241439.1
COORDINATES: similar to AA sequence:RefSeq:WP_011136979.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008552775.1
COORDINATES: similar to AA sequence:RefSeq:WP_010323421.1
COORDINATES: similar to AA sequence:RefSeq:WP_007193663.1
GO:0016471 - vacuolar proton-transporting V-type ATPase complex [Evidence IEA]
GO:0008553 - P-type proton-exporting transporter activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007041980.1
COORDINATES: similar to AA sequence:RefSeq:WP_005224592.1
COORDINATES: similar to AA sequence:RefSeq:WP_006312415.1
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011750906.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
ribosome-associated ATPase/putative transporter RbbA
COORDINATES: similar to AA sequence:RefSeq:WP_006174421.1
COORDINATES: protein motif:HMM:NF024751.2
COORDINATES: similar to AA sequence:RefSeq:WP_015886710.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
COORDINATES: similar to AA sequence:RefSeq:WP_019296484.1
GO:0008783 - agmatinase activity [Evidence IEA]
GO:0008295 - spermidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019296485.1
COORDINATES: similar to AA sequence:RefSeq:WP_005981428.1
saccharopine dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014285696.1
GO:0008792 - arginine decarboxylase activity [Evidence IEA]
GO:0006527 - arginine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020041111.1
endonuclease/exonuclease/phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008758577.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010397036.1
CaiB/BaiF CoA-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008331018.1
COORDINATES: similar to AA sequence:RefSeq:WP_007197888.1
COORDINATES: similar to AA sequence:RefSeq:WP_017929778.1
COORDINATES: similar to AA sequence:RefSeq:WP_018634233.1
GO:0004474 - malate synthase activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_002517214.1
GO:0004451 - isocitrate lyase activity [Evidence IEA]
GO:0019752 - carboxylic acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018388594.1
COORDINATES: similar to AA sequence:RefSeq:WP_009759284.1
COORDINATES: similar to AA sequence:RefSeq:WP_018243242.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750665.1
COORDINATES: similar to AA sequence:RefSeq:WP_020397082.1
COORDINATES: similar to AA sequence:RefSeq:WP_020397083.1
COORDINATES: similar to AA sequence:RefSeq:WP_006468416.1
COORDINATES: protein motif:HMM:NF012742.2
COORDINATES: similar to AA sequence:RefSeq:WP_013963337.1
GO:0008535 - respiratory chain complex IV assembly [Evidence IEA]
cbb3-type cytochrome oxidase assembly protein CcoS
COORDINATES: similar to AA sequence:RefSeq:WP_005980641.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015493604.1
COORDINATES: similar to AA sequence:RefSeq:WP_014881154.1
GO:0003674 - molecular_function [Evidence IEA]
cytochrome c oxidase accessory protein CcoG
COORDINATES: similar to AA sequence:RefSeq:WP_014875889.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
cytochrome-c oxidase, cbb3-type subunit III
COORDINATES: similar to AA sequence:RefSeq:WP_011907592.1
cbb3-type cytochrome c oxidase subunit 3
COORDINATES: similar to AA sequence:RefSeq:WP_011539860.1
cytochrome-c oxidase, cbb3-type subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_014875892.1
cytochrome-c oxidase, cbb3-type subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_007425987.1
COORDINATES: similar to AA sequence:RefSeq:WP_007800924.1
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009566218.1
GO:0008442 - 3-hydroxyisobutyrate dehydrogenase activity [Evidence IEA]
GO:0006574 - valine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017929660.1
indolepyruvate ferredoxin oxidoreductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005978847.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein
COORDINATES: protein motif:HMM:NF013224.2
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015920744.1
MetQ/NlpA family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011911188.1
COORDINATES: similar to AA sequence:RefSeq:WP_009574238.1
methionine ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008205180.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008558181.1
COORDINATES: similar to AA sequence:RefSeq:WP_007798727.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019295628.1
COORDINATES: similar to AA sequence:RefSeq:WP_010443392.1
COORDINATES: similar to AA sequence:RefSeq:WP_008209760.1
MotA/TolQ/ExbB proton channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008558392.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807609.1
COORDINATES: protein motif:HMM:NF025684.2
COORDINATES: similar to AA sequence:RefSeq:WP_005608874.1
COORDINATES: similar to AA sequence:RefSeq:WP_009159377.1
GO:0022626 - cytosolic ribosome [Evidence IEA]; GO:0005840 - ribosome [Evidence IEA]
GO:0045182 - translation regulator activity [Evidence IEA]
GO:0009386 - translational attenuation [Evidence IEA]
ribosome-associated translation inhibitor RaiA
COORDINATES: similar to AA sequence:RefSeq:WP_009157323.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]; GO:0015221 - lipopolysaccharide transmembrane transporter activity [Evidence IEA]
GO:0015920 - lipopolysaccharide transport [Evidence IEA]
LPS export ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008886897.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0001530 - lipopolysaccharide binding [Evidence IEA]
lipopolysaccharide transport periplasmic protein LptA
COORDINATES: protein motif:HMM:NF018537.2
LPS export ABC transporter periplasmic protein LptC
COORDINATES: similar to AA sequence:RefSeq:WP_013065861.1
GO:0016853 - isomerase activity [Evidence IEA]
KpsF/GutQ family sugar-phosphate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_009816982.1
COORDINATES: similar to AA sequence:RefSeq:WP_005619169.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007798766.1
COORDINATES: similar to AA sequence:RefSeq:WP_005608010.1
COORDINATES: similar to AA sequence:RefSeq:WP_008756006.1
COORDINATES: similar to AA sequence:RefSeq:WP_008886683.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012176773.1
COORDINATES: protein motif:HMM:NF013700.2
peptidoglycan DD-metalloendopeptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012176771.1
GO:0046537 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
2,3-bisphosphoglycerate-independent phosphoglycerate mutase
COORDINATES: similar to AA sequence:RefSeq:WP_019297353.1
23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH
COORDINATES: similar to AA sequence:RefSeq:WP_011045987.1
GO:0043022 - ribosome binding [Evidence IEA]
GO:0017148 - negative regulation of translation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012176767.1
GO:0009316 - 3-isopropylmalate dehydratase complex [Evidence IEA]
GO:0003861 - 3-isopropylmalate dehydratase activity [Evidence IEA]
GO:0009098 - leucine biosynthetic process [Evidence IEA]
3-isopropylmalate dehydratase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_009570133.1
COORDINATES: similar to AA sequence:RefSeq:WP_011453249.1
3-isopropylmalate dehydratase small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008758191.1
COORDINATES: similar to AA sequence:RefSeq:WP_009178369.1
GO:0003862 - 3-isopropylmalate dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008027015.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803906.1
IclR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019966579.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006468972.1
COORDINATES: similar to AA sequence:RefSeq:WP_012654362.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
GO:0019619 - 3,4-dihydroxybenzoate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005622858.1
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009175416.1
COORDINATES: similar to AA sequence:RefSeq:WP_011088106.1
COORDINATES: similar to AA sequence:RefSeq:WP_013384907.1
COORDINATES: protein motif:HMM:NF015431.2
LysR substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF024777.2
LamG-like jellyroll fold domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015696767.1
COORDINATES: similar to AA sequence:RefSeq:WP_007793600.1
COORDINATES: similar to AA sequence:RefSeq:WP_008757964.1
GO:0008808 - cardiolipin synthase activity [Evidence IEA]
GO:0032049 - cardiolipin biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF017088.2