Qingshengfaniella alkalisoli strain LN3S51 plasmid unnamed2, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Qingshengfaniella.
Litoreibacter alkalisoli sp. nov., isolated from saline-alkaline soil
Submitted (26-JUL-2019) School of Ecology and Environment, Inner Mongolia University, Daxuexijie #235, Hohhot, Inner Mongolia 010021, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP042263.1.\nBacteria and source DNA available from Ji-Quan Sun.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2019\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 30.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/28/2023 03:44:49\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,809\nCDSs (total) :: 3,747\nGenes (coding) :: 3,628\nCDSs (with protein) :: 3,628\nGenes (RNA) :: 62\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 119\nCDSs (without protein) :: 119\nPseudo Genes (ambiguous residues) :: 0 of 119\nPseudo Genes (frameshifted) :: 55 of 119\nPseudo Genes (incomplete) :: 78 of 119\nPseudo Genes (internal stop) :: 18 of 119\nPseudo Genes (multiple problems) :: 30 of 119\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Qingshengfaniella alkalisoli
COORDINATES: similar to AA sequence:RefSeq:WP_013984556.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014889201.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_007796486.1
COORDINATES: similar to AA sequence:RefSeq:WP_014899897.1
COORDINATES: similar to AA sequence:RefSeq:WP_013216015.1
GO:0003871 - 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0008652 - amino acid biosynthetic process [Evidence IEA]; GO:0009086 - methionine biosynthetic process [Evidence IEA]
5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011454853.1
COORDINATES: similar to AA sequence:RefSeq:WP_008195764.1
sigma-54 dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008236335.1
GO:0005215 - transporter activity [Evidence IEA]
TAXI family TRAP transporter solute-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007198678.1
COORDINATES: similar to AA sequence:RefSeq:WP_008886023.1
COORDINATES: similar to AA sequence:RefSeq:WP_007794252.1
COORDINATES: similar to AA sequence:RefSeq:WP_002719889.1
rhodanese-like domain-containing protein
COORDINATES: protein motif:HMM:NF025001.2
COORDINATES: protein motif:HMM:NF014273.2
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009491598.1
adenine deaminase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013850748.1
GO:0009116 - nucleoside metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007826964.1
COORDINATES: similar to AA sequence:RefSeq:WP_009491599.1
COORDINATES: similar to AA sequence:RefSeq:WP_011456357.1
COORDINATES: similar to AA sequence:RefSeq:WP_013384375.1
COORDINATES: similar to AA sequence:RefSeq:WP_018241765.1
COORDINATES: similar to AA sequence:RefSeq:WP_013384377.1
COORDINATES: similar to AA sequence:RefSeq:WP_013384378.1
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF017181.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007255278.1
COORDINATES: similar to AA sequence:RefSeq:WP_010138472.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008335297.1
dipeptide/oligopeptide/nickel ABC transporter permease/ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007255297.1
COORDINATES: similar to AA sequence:RefSeq:WP_007795244.1
COORDINATES: similar to AA sequence:RefSeq:WP_008335308.1
COORDINATES: similar to AA sequence:RefSeq:WP_015340800.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006724874.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653771.1
COORDINATES: similar to AA sequence:RefSeq:WP_007536633.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018184874.1
COORDINATES: similar to AA sequence:RefSeq:WP_018184873.1
COORDINATES: similar to AA sequence:RefSeq:WP_018856677.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_008884018.1
COORDINATES: similar to AA sequence:RefSeq:WP_007816386.1
COORDINATES: similar to AA sequence:RefSeq:WP_018098410.1
COORDINATES: similar to AA sequence:RefSeq:WP_018448592.1
COORDINATES: similar to AA sequence:RefSeq:WP_006314855.1
COORDINATES: similar to AA sequence:RefSeq:WP_005861577.1
amidohydrolase/deacetylase family metallohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_004610643.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019588329.1
COORDINATES: similar to AA sequence:RefSeq:WP_007996857.1
COORDINATES: similar to AA sequence:RefSeq:WP_010660953.1
COORDINATES: similar to AA sequence:RefSeq:WP_009489425.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_006935059.1
hybrid-cluster NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_002725087.1
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_008190096.1
COORDINATES: similar to AA sequence:RefSeq:WP_011579933.1
COORDINATES: similar to AA sequence:RefSeq:WP_006698400.1
GO:0008115 - sarcosine oxidase activity [Evidence IEA]
GO:0046653 - tetrahydrofolate metabolic process [Evidence IEA]
sarcosine oxidase subunit beta family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007206137.1
COORDINATES: similar to AA sequence:RefSeq:WP_007797904.1
sarcosine oxidase subunit alpha family protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008838867.1
GO:0030253 - protein secretion by the type I secretion system [Evidence IEA]
HlyD family type I secretion periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010442557.1
COORDINATES: similar to AA sequence:RefSeq:WP_008755458.1
COORDINATES: protein motif:HMM:NF012422.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009178951.1
COORDINATES: similar to AA sequence:RefSeq:WP_007812458.1
Members of this family of hydrolases with an active site Cys residue belong to MEROPS family C26; Derived by automated computational analysis using gene prediction method: Protein Homology.
gamma-glutamyl-gamma-aminobutyrate hydrolase family protein
COORDINATES: protein motif:HMM:NF023645.2
COORDINATES: similar to AA sequence:RefSeq:WP_007117756.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009177730.1
COORDINATES: similar to AA sequence:RefSeq:WP_015316724.1
COORDINATES: similar to AA sequence:RefSeq:WP_009813630.1
COORDINATES: similar to AA sequence:RefSeq:WP_009178788.1
COORDINATES: similar to AA sequence:RefSeq:WP_012643908.1
COORDINATES: similar to AA sequence:RefSeq:WP_009178648.1
COORDINATES: similar to AA sequence:RefSeq:WP_007117685.1
COORDINATES: similar to AA sequence:RefSeq:WP_009506577.1
aminoacetone oxidase family FAD-binding enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_009208053.1
COORDINATES: similar to AA sequence:RefSeq:WP_013134839.1
tripartite tricarboxylate transporter permease
COORDINATES: protein motif:HMM:NF018979.2
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007111337.1
COORDINATES: similar to AA sequence:RefSeq:WP_020040449.1
COORDINATES: similar to AA sequence:RefSeq:WP_020011942.1
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: similar to AA sequence:RefSeq:WP_004579079.1
GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity [Evidence IEA]
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011305069.1
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
COORDINATES: protein motif:HMM:NF012360.2
COORDINATES: protein motif:HMM:TIGR00112.1
GO:0004735 - pyrroline-5-carboxylate reductase activity [Evidence IEA]
GO:0006561 - proline biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008279961.1
GO:0003842 - 1-pyrroline-5-carboxylate dehydrogenase activity [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0004657 - proline dehydrogenase activity [Evidence IEA]
GO:0010133 - proline catabolic process to glutamate [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA
COORDINATES: similar to AA sequence:RefSeq:WP_008557855.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_060835708.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009176264.1
GO:0008812 - choline dehydrogenase activity [Evidence IEA]
GO:0019285 - glycine betaine biosynthetic process from choline [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019295700.1
GO:0008802 - betaine-aldehyde dehydrogenase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009815382.1
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007816208.1
GO:0019285 - glycine betaine biosynthetic process from choline [Evidence IEA]; GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008884727.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
GO:0015220 - choline transmembrane transporter activity [Evidence IEA]
GO:0015871 - choline transport [Evidence IEA]
choline ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009826591.1
choline ABC transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018303804.1
choline ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013334212.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019019281.1
COORDINATES: similar to AA sequence:RefSeq:WP_016854207.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611445.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024859.2
COORDINATES: similar to AA sequence:RefSeq:WP_020039576.1
COORDINATES: similar to AA sequence:RefSeq:WP_007121021.1
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007799719.1
COORDINATES: similar to AA sequence:RefSeq:WP_011242194.1
COORDINATES: similar to AA sequence:RefSeq:WP_006472104.1
COORDINATES: similar to AA sequence:RefSeq:WP_019401283.1
COORDINATES: similar to AA sequence:RefSeq:WP_016727005.1
COORDINATES: similar to AA sequence:RefSeq:WP_014199900.1
COORDINATES: similar to AA sequence:RefSeq:WP_008651130.1
COORDINATES: similar to AA sequence:RefSeq:WP_019401279.1
COORDINATES: protein motif:HMM:NF015431.2
LysR substrate-binding domain-containing protein
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: protein motif:HMM:NF012257.2
Crp/Fnr family transcriptional regulator
COORDINATES: protein motif:HMM:NF012437.2
adenylate/guanylate cyclase domain-containing protein
COORDINATES: protein motif:HMM:NF018066.2
COORDINATES: similar to AA sequence:RefSeq:WP_007205992.1
COORDINATES: similar to AA sequence:RefSeq:WP_018856323.1
COORDINATES: similar to AA sequence:RefSeq:WP_008121494.1
COORDINATES: similar to AA sequence:RefSeq:WP_008121495.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958333.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572432.1
COORDINATES: similar to AA sequence:RefSeq:WP_018856328.1
COORDINATES: similar to AA sequence:RefSeq:WP_012346172.1
nucleobase:cation symporter-2 family protein
COORDINATES: protein motif:HMM:NF024758.2
COORDINATES: similar to AA sequence:RefSeq:WP_019964057.1
2-oxoglutarate and iron-dependent oxygenase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006940269.1
COORDINATES: similar to AA sequence:RefSeq:WP_006940272.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653777.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653776.1
COORDINATES: similar to AA sequence:RefSeq:WP_007800239.1
COORDINATES: similar to AA sequence:RefSeq:WP_007426926.1
GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor [Evidence IEA]
cytochrome d ubiquinol oxidase subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_017927419.1
COORDINATES: similar to AA sequence:RefSeq:WP_008280778.1
GO:0043828 - tRNA 2-selenouridine synthase activity [Evidence IEA]
GO:0002098 - tRNA wobble uridine modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008209883.1
GO:0004756 - selenide, water dikinase activity [Evidence IEA]
GO:0001887 - selenium compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024242.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018183231.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736568.1
COORDINATES: similar to AA sequence:RefSeq:WP_007255710.1
COORDINATES: similar to AA sequence:RefSeq:WP_018096067.1
COORDINATES: similar to AA sequence:RefSeq:WP_003574468.1
COORDINATES: similar to AA sequence:RefSeq:WP_007255706.1
COORDINATES: similar to AA sequence:RefSeq:WP_009810486.1
GO:0003824 - catalytic activity [Evidence IEA]
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010138766.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007426350.1
COORDINATES: similar to AA sequence:RefSeq:WP_009810483.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0015556 - C4-dicarboxylate transmembrane transporter activity [Evidence IEA]
GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005616522.1
bifunctional sulfate adenylyltransferase/adenylylsulfate kinase
COORDINATES: similar to AA sequence:RefSeq:WP_019965245.1
COORDINATES: similar to AA sequence:RefSeq:WP_019566468.1
COORDINATES: similar to AA sequence:RefSeq:WP_019965243.1
COORDINATES: similar to AA sequence:RefSeq:WP_019965242.1
COORDINATES: similar to AA sequence:RefSeq:WP_007775293.1
COORDINATES: similar to AA sequence:RefSeq:WP_020812558.1
COORDINATES: similar to AA sequence:RefSeq:WP_006724721.1
COORDINATES: similar to AA sequence:RefSeq:WP_011841462.1
GO:0008678 - 2-deoxy-D-gluconate 3-dehydrogenase activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0000272 - polysaccharide catabolic process [Evidence IEA]
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD
COORDINATES: similar to AA sequence:RefSeq:WP_020812567.1
GO:0008697 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase activity [Evidence IEA]
GO:0045490 - pectin catabolic process [Evidence IEA]
5-dehydro-4-deoxy-D-glucuronate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_020043478.1
COORDINATES: similar to AA sequence:RefSeq:WP_018917891.1
COORDINATES: similar to AA sequence:RefSeq:WP_018700963.1
COORDINATES: similar to AA sequence:RefSeq:WP_018099144.1
galactofuranose ABC transporter, galactofuranose-binding protein YtfQ
COORDINATES: similar to AA sequence:RefSeq:WP_007826689.1
galactofuranose ABC transporter, ATP-binding protein YtfR
COORDINATES: similar to AA sequence:RefSeq:WP_019963729.1
COORDINATES: similar to AA sequence:RefSeq:WP_018324774.1
galactofuranose ABC transporter, permease protein YjfF
COORDINATES: similar to AA sequence:RefSeq:WP_007532652.1
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018688288.1
COORDINATES: similar to AA sequence:RefSeq:WP_012640999.1
COORDINATES: similar to AA sequence:RefSeq:WP_010972757.1
COORDINATES: similar to AA sequence:RefSeq:WP_010139649.1
COORDINATES: similar to AA sequence:RefSeq:WP_010972759.1
COORDINATES: similar to AA sequence:RefSeq:WP_017276448.1
COORDINATES: similar to AA sequence:RefSeq:WP_006938451.1
COORDINATES: similar to AA sequence:RefSeq:WP_003508161.1
COORDINATES: similar to AA sequence:RefSeq:WP_008835823.1
COORDINATES: similar to AA sequence:RefSeq:WP_019997785.1
COORDINATES: similar to AA sequence:RefSeq:WP_013772471.1
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: protein motif:HMM:NF037007.2
COORDINATES: similar to AA sequence:RefSeq:WP_010968367.1
COORDINATES: similar to AA sequence:RefSeq:WP_009760281.1
COORDINATES: protein motif:HMM:NF003915.0
N-acetylmuramic acid 6-phosphate etherase
COORDINATES: similar to AA sequence:RefSeq:WP_009760279.1
COORDINATES: similar to AA sequence:RefSeq:WP_010968420.1
GO:0005507 - copper ion binding [Evidence IEA]
GO:0055070 - copper ion homeostasis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013200953.1
COORDINATES: similar to AA sequence:RefSeq:WP_009760276.1
COORDINATES: similar to AA sequence:RefSeq:WP_009760275.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672440.1
COORDINATES: similar to AA sequence:RefSeq:WP_018237399.1
COORDINATES: similar to AA sequence:RefSeq:WP_007602695.1
COORDINATES: similar to AA sequence:RefSeq:WP_009760271.1
COORDINATES: similar to AA sequence:RefSeq:WP_019998295.1
COORDINATES: similar to AA sequence:RefSeq:WP_007627924.1
COORDINATES: similar to AA sequence:RefSeq:WP_006933173.1
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018448642.1
COORDINATES: similar to AA sequence:RefSeq:WP_012654464.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018858437.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807707.1
COORDINATES: similar to AA sequence:RefSeq:WP_009815941.1
COORDINATES: similar to AA sequence:RefSeq:WP_008209795.1
COORDINATES: similar to AA sequence:RefSeq:WP_009815944.1
protein phosphatase 2C domain-containing protein
COORDINATES: protein motif:HMM:TIGR03373.1
type VI secretion system-associated protein TagF
COORDINATES: similar to AA sequence:RefSeq:WP_009806917.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
type VI secretion system membrane subunit TssM
COORDINATES: similar to AA sequence:RefSeq:WP_009807587.1
GO:0033104 - type VI protein secretion system complex [Evidence IEA]
type VI secretion system protein TssL, long form
COORDINATES: similar to AA sequence:RefSeq:WP_008229584.1
type VI secretion system baseplate subunit TssK
COORDINATES: similar to AA sequence:RefSeq:WP_009815949.1
type VI secretion system-associated FHA domain protein TagH
COORDINATES: similar to AA sequence:RefSeq:WP_016941224.1
COORDINATES: similar to AA sequence:RefSeq:WP_009806911.1
type VI secretion system tip protein TssI/VgrG
COORDINATES: protein motif:HMM:NF017730.2
type VI secretion system contractile sheath large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010443394.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
type VI secretion system contractile sheath small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019294627.1
COORDINATES: similar to AA sequence:RefSeq:WP_009549665.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007041000.1
type VI secretion system baseplate subunit TssG
COORDINATES: similar to AA sequence:RefSeq:WP_008558439.1
type VI secretion system baseplate subunit TssF
COORDINATES: similar to AA sequence:RefSeq:WP_019294622.1
type VI secretion system baseplate subunit TssE
COORDINATES: similar to AA sequence:RefSeq:WP_009815962.1
type VI secretion system accessory protein TagJ
COORDINATES: similar to AA sequence:RefSeq:WP_007796447.1
type VI secretion system tube protein Hcp
COORDINATES: similar to AA sequence:RefSeq:WP_019294619.1
COORDINATES: similar to AA sequence:RefSeq:WP_009806896.1
COORDINATES: similar to AA sequence:RefSeq:WP_009815977.1
COORDINATES: protein motif:HMM:NF017658.2
COORDINATES: protein motif:HMM:NF015803.2
ShlB/FhaC/HecB family hemolysin secretion/activation protein
COORDINATES: similar to AA sequence:RefSeq:WP_003545642.1
COORDINATES: similar to AA sequence:RefSeq:WP_009566020.1
COORDINATES: similar to AA sequence:RefSeq:WP_004124549.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009805915.1
COORDINATES: similar to AA sequence:RefSeq:WP_011910212.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_009805913.1
COORDINATES: similar to AA sequence:RefSeq:WP_009209333.1
COORDINATES: similar to AA sequence:RefSeq:WP_012093337.1
COORDINATES: similar to AA sequence:RefSeq:WP_020592408.1
CoA-acylating methylmalonate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_013963544.1
COORDINATES: similar to AA sequence:RefSeq:WP_007256351.1
COORDINATES: protein motif:HMM:NF016894.2
GO:0008671 - 2-dehydro-3-deoxygalactonokinase activity [Evidence IEA]
GO:0034194 - D-galactonate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005858184.1
GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0051068 - dihydrolipoamide metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005858186.1
GO:0045254 - pyruvate dehydrogenase complex [Evidence IEA]
GO:0004742 - dihydrolipoyllysine-residue acetyltransferase activity [Evidence IEA]
GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IEA]
dihydrolipoyllysine-residue acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_012178638.1
GO:0045250 - cytosolic pyruvate dehydrogenase complex [Evidence IEA]
GO:0004738 - pyruvate dehydrogenase activity [Evidence IEA]
pyruvate dehydrogenase (acetyl-transferring), homodimeric type
COORDINATES: similar to AA sequence:RefSeq:WP_007798099.1
Lrp/AsnC ligand binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007426205.1
COORDINATES: similar to AA sequence:RefSeq:WP_007256058.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820256.1
COORDINATES: similar to AA sequence:RefSeq:WP_007791850.1
hydrogen peroxide-inducible genes activator
COORDINATES: similar to AA sequence:RefSeq:WP_011910249.1
GO:0004096 - catalase activity [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]
GO:0006979 - response to oxidative stress [Evidence IEA]
VPLPA-CTERM sorting domain-containing protein
COORDINATES: protein motif:HMM:NF021616.2
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: similar to AA sequence:RefSeq:WP_008227641.1
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: similar to AA sequence:RefSeq:WP_010141423.1
GO:0019134 - glucosamine-1-phosphate N-acetyltransferase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0003977 - UDP-N-acetylglucosamine diphosphorylase activity [Evidence IEA]
GO:0000902 - cell morphogenesis [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]; GO:0006048 - UDP-N-acetylglucosamine biosynthetic process [Evidence IEA]
bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU
COORDINATES: protein motif:HMM:NF015049.2
COORDINATES: protein motif:HMM:NF024627.2
LamG-like jellyroll fold domain-containing protein
COORDINATES: protein motif:HMM:NF016060.2
COORDINATES: similar to AA sequence:RefSeq:WP_006007227.1
COORDINATES: protein motif:HMM:NF015527.2
GO:0008146 - sulfotransferase activity [Evidence IEA]
sulfotransferase family 2 domain-containing protein
COORDINATES: protein motif:HMM:NF024832.2
COORDINATES: similar to AA sequence:RefSeq:WP_017998808.1
GO:0008909 - isochorismate synthase activity [Evidence IEA]
GO:0009234 - menaquinone biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019462236.1
COORDINATES: similar to AA sequence:RefSeq:WP_007438389.1
GO:0008667 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase activity [Evidence IEA]
GO:0019290 - siderophore biosynthetic process [Evidence IEA]
2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_007205278.1
sugar phosphate isomerase/epimerase and 4-hydroxyphenylpyruvate domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008889075.1
COORDINATES: similar to AA sequence:RefSeq:WP_008883572.1
COORDINATES: similar to AA sequence:RefSeq:WP_020683507.1
TRAP transporter substrate-binding protein DctP
COORDINATES: similar to AA sequence:RefSeq:WP_006936146.1
GO:0004764 - shikimate 3-dehydrogenase (NADP+) activity [Evidence IEA]
GO:0019632 - shikimate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019404873.1
COORDINATES: similar to AA sequence:RefSeq:WP_009825552.1
COORDINATES: similar to AA sequence:RefSeq:WP_010441715.1
5-carboxymethyl-2-hydroxymuconate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_007121338.1
COORDINATES: similar to AA sequence:RefSeq:WP_009492534.1
GO:0015833 - peptide transport [Evidence IEA]
dipeptide ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017929872.1
COORDINATES: similar to AA sequence:RefSeq:WP_017929871.1
COORDINATES: similar to AA sequence:RefSeq:WP_006938983.1
COORDINATES: similar to AA sequence:RefSeq:WP_017929869.1
gamma-glutamyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017962490.1
COORDINATES: similar to AA sequence:RefSeq:WP_017929867.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007121236.1
COORDINATES: similar to AA sequence:RefSeq:WP_007767291.1
COORDINATES: similar to AA sequence:RefSeq:WP_015008690.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480302.1
COORDINATES: similar to AA sequence:RefSeq:WP_014530826.1
COORDINATES: similar to AA sequence:RefSeq:WP_018062950.1
COORDINATES: similar to AA sequence:RefSeq:WP_019564966.1
COORDINATES: similar to AA sequence:RefSeq:WP_011471625.1
COORDINATES: protein motif:HMM:NF018682.2
four-carbon acid sugar kinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018062946.1
GO:0050570 - 4-hydroxythreonine-4-phosphate dehydrogenase activity [Evidence IEA]
GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]
4-hydroxythreonine-4-phosphate dehydrogenase PdxA
COORDINATES: similar to AA sequence:RefSeq:WP_018062945.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009812801.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803826.1
COORDINATES: similar to AA sequence:RefSeq:WP_009178601.1
COORDINATES: protein motif:HMM:NF016462.2
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_008835078.1
COORDINATES: similar to AA sequence:RefSeq:WP_008563361.1