Qingshengfaniella alkalisoli strain LN3S51 plasmid unnamed1, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Qingshengfaniella.
Litoreibacter alkalisoli sp. nov., isolated from saline-alkaline soil
Submitted (26-JUL-2019) School of Ecology and Environment, Inner Mongolia University, Daxuexijie #235, Hohhot, Inner Mongolia 010021, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP042262.1.\nBacteria and source DNA available from Ji-Quan Sun.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2019\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 30.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/28/2023 03:44:49\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,809\nCDSs (total) :: 3,747\nGenes (coding) :: 3,628\nCDSs (with protein) :: 3,628\nGenes (RNA) :: 62\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 119\nCDSs (without protein) :: 119\nPseudo Genes (ambiguous residues) :: 0 of 119\nPseudo Genes (frameshifted) :: 55 of 119\nPseudo Genes (incomplete) :: 78 of 119\nPseudo Genes (internal stop) :: 18 of 119\nPseudo Genes (multiple problems) :: 30 of 119\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Qingshengfaniella alkalisoli
COORDINATES: similar to AA sequence:RefSeq:WP_011842399.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014273.2
ParB N-terminal domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_018517687.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024834.2
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013962535.1
COORDINATES: similar to AA sequence:RefSeq:WP_026155209.1
COORDINATES: similar to AA sequence:RefSeq:WP_060835708.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010140193.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010140194.1
carbon-nitrogen hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006699235.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010140196.1
COORDINATES: similar to AA sequence:RefSeq:WP_010140197.1
COORDINATES: similar to AA sequence:RefSeq:WP_010140198.1
COORDINATES: similar to AA sequence:RefSeq:WP_013637114.1
COORDINATES: protein motif:HMM:NF014670.2
COORDINATES: similar to AA sequence:RefSeq:WP_010140201.1
COORDINATES: similar to AA sequence:RefSeq:WP_014132958.1
COORDINATES: similar to AA sequence:RefSeq:WP_010140204.1
COORDINATES: similar to AA sequence:RefSeq:WP_010140205.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014530389.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018898014.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010394450.1
COORDINATES: similar to AA sequence:RefSeq:WP_010394451.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751066.1
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_003499958.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010141994.1
tricarballylate utilization 4Fe-4S protein TcuB
COORDINATES: similar to AA sequence:RefSeq:WP_010141996.1
COORDINATES: similar to AA sequence:RefSeq:WP_018183934.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008840380.1
COORDINATES: similar to AA sequence:RefSeq:WP_019198341.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015129 - lactate transmembrane transporter activity [Evidence IEA]
GO:0015727 - lactate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019198342.1
COORDINATES: similar to AA sequence:RefSeq:WP_003818856.1
GO:0006750 - glutathione biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009157880.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013188.2
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:1902600 - proton transmembrane transport [Evidence IEA]
monovalent cation:proton antiporter-2 (CPA2) family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007256807.1
COORDINATES: similar to AA sequence:RefSeq:WP_007825993.1
COORDINATES: similar to AA sequence:RefSeq:WP_013217001.1
COORDINATES: similar to AA sequence:RefSeq:WP_012177315.1
COORDINATES: similar to AA sequence:RefSeq:WP_017742466.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002810563.1
COORDINATES: similar to AA sequence:RefSeq:WP_011314041.1
GO:0005515 - protein binding [Evidence IEA]
GO:0006749 - glutathione metabolic process [Evidence IEA]
glutathione S-transferase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008437422.1
COORDINATES: similar to AA sequence:RefSeq:WP_002964935.1
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_019618924.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018953075.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF024950.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_018301170.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009542917.1
tellurite resistance TerB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018066197.1
COORDINATES: similar to AA sequence:RefSeq:WP_011749347.1
COORDINATES: similar to AA sequence:RefSeq:WP_012091657.1
COORDINATES: similar to AA sequence:RefSeq:WP_008335662.1
COORDINATES: protein motif:HMM:NF018684.2
COORDINATES: protein motif:HMM:NF024909.2
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF017826.2
COORDINATES: similar to AA sequence:RefSeq:WP_005848984.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]
GO:0006276 - plasmid maintenance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009573267.1
type II toxin-antitoxin system CcdA family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_076612075.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008292353.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397262.1
GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IEA]
GO:0006012 - galactose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008208330.1
GO:0016301 - kinase activity [Evidence IEA]
type II toxin-antitoxin system death-on-curing family toxin
COORDINATES: protein motif:HMM:NF016763.2
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: similar to AA sequence:RefSeq:WP_017999663.1
COORDINATES: protein motif:HMM:NF017011.2
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612193.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014994108.1
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: protein motif:HMM:NF025953.2
COORDINATES: protein motif:HMM:NF033542.1
COORDINATES: similar to AA sequence:RefSeq:WP_028714619.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015821555.1
COORDINATES: protein motif:HMM:NF012742.2
COORDINATES: similar to AA sequence:RefSeq:WP_009805997.1
sugar phosphate isomerase/epimerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009805996.1
COORDINATES: similar to AA sequence:RefSeq:WP_009805995.1
COORDINATES: similar to AA sequence:RefSeq:WP_018185042.1
COORDINATES: similar to AA sequence:RefSeq:WP_015657329.1
COORDINATES: similar to AA sequence:RefSeq:WP_009805992.1
COORDINATES: similar to AA sequence:RefSeq:WP_011454499.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014875701.1
COORDINATES: similar to AA sequence:RefSeq:WP_014875702.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007798878.1
COORDINATES: similar to AA sequence:RefSeq:WP_009806946.1
nucleoside/nucleotide kinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611917.1
COORDINATES: similar to AA sequence:RefSeq:WP_008561972.1
COORDINATES: similar to AA sequence:RefSeq:WP_012177568.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006488630.1
COORDINATES: protein motif:HMM:NF013117.2
COORDINATES: similar to AA sequence:RefSeq:WP_005857369.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014873404.1
COORDINATES: protein motif:HMM:NF021606.2
COORDINATES: similar to AA sequence:RefSeq:WP_008919285.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008833835.1
COORDINATES: similar to AA sequence:RefSeq:WP_018856018.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017991971.1
COORDINATES: similar to AA sequence:RefSeq:WP_017991964.1
COORDINATES: similar to AA sequence:RefSeq:WP_018303509.1
COORDINATES: similar to AA sequence:RefSeq:WP_017991966.1
COORDINATES: similar to AA sequence:RefSeq:WP_018064081.1
COORDINATES: similar to AA sequence:RefSeq:WP_018303512.1
COORDINATES: similar to AA sequence:RefSeq:WP_007812109.1
COORDINATES: similar to AA sequence:RefSeq:WP_007755899.1
COORDINATES: similar to AA sequence:RefSeq:WP_017991970.1
COORDINATES: similar to AA sequence:RefSeq:WP_007427317.1
GO:0016829 - lyase activity [Evidence IEA]
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007010535.1
COORDINATES: similar to AA sequence:RefSeq:WP_007010534.1
sialic acid TRAP transporter substrate-binding protein SiaP
COORDINATES: similar to AA sequence:RefSeq:WP_007427321.1
COORDINATES: similar to AA sequence:RefSeq:WP_008593574.1
COORDINATES: similar to AA sequence:RefSeq:WP_007427323.1
putative N-acetylmannosamine-6-phosphate 2-epimerase
COORDINATES: similar to AA sequence:RefSeq:WP_007427324.1
COORDINATES: similar to AA sequence:RefSeq:WP_013385670.1
COORDINATES: similar to AA sequence:RefSeq:WP_009830698.1
COORDINATES: similar to AA sequence:RefSeq:WP_007257208.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827914.1
COORDINATES: similar to AA sequence:RefSeq:WP_007257206.1
COORDINATES: similar to AA sequence:RefSeq:WP_007257205.1
COORDINATES: similar to AA sequence:RefSeq:WP_007257204.1
COORDINATES: similar to AA sequence:RefSeq:WP_018181559.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009831400.1
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018401547.1
COORDINATES: similar to AA sequence:RefSeq:WP_007257199.1
COORDINATES: similar to AA sequence:RefSeq:WP_017183479.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011084785.1
type II toxin-antitoxin system HipA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_076612253.1
COORDINATES: similar to AA sequence:RefSeq:WP_010581674.1
COORDINATES: similar to AA sequence:RefSeq:WP_010443739.1
COORDINATES: similar to AA sequence:RefSeq:WP_008556318.1
COORDINATES: similar to AA sequence:RefSeq:WP_009830586.1
COORDINATES: similar to AA sequence:RefSeq:WP_009830383.1
COORDINATES: similar to AA sequence:RefSeq:WP_008556662.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611977.1
COORDINATES: similar to AA sequence:RefSeq:WP_010441505.1
COORDINATES: similar to AA sequence:RefSeq:WP_015276663.1
GO:0008446 - GDP-mannose 4,6-dehydratase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024602.2
COORDINATES: similar to AA sequence:RefSeq:WP_007880562.1
glutamate-1-semialdehyde 2,1-aminomutase
COORDINATES: protein motif:HMM:NF016145.2
polysaccharide pyruvyl transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008510069.1
COORDINATES: protein motif:HMM:NF024832.2
COORDINATES: similar to AA sequence:RefSeq:WP_016844238.1
COORDINATES: similar to AA sequence:RefSeq:WP_008838891.1
COORDINATES: similar to AA sequence:RefSeq:WP_015887437.1
GO:0008830 - dTDP-4-dehydrorhamnose 3,5-epimerase activity [Evidence IEA]
GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004685009.1
COORDINATES: similar to AA sequence:RefSeq:WP_019196525.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015887440.1
COORDINATES: protein motif:HMM:NF012422.2
exopolysaccharide transport family protein
COORDINATES: protein motif:HMM:NF014606.2
polysaccharide biosynthesis/export family protein
COORDINATES: protein motif:HMM:NF024968.2
COORDINATES: similar to AA sequence:RefSeq:WP_009363628.1
COORDINATES: similar to AA sequence:RefSeq:WP_004685018.1
COORDINATES: similar to AA sequence:RefSeq:WP_006196273.1
putative colanic acid biosynthesis acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_009363622.1
COORDINATES: protein motif:HMM:NF013146.2
COORDINATES: similar to AA sequence:RefSeq:WP_013579605.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008741 - ribulokinase activity [Evidence IEA]
GO:0019569 - L-arabinose catabolic process to xylulose 5-phosphate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020713896.1
COORDINATES: similar to AA sequence:RefSeq:WP_008874175.1
COORDINATES: similar to AA sequence:RefSeq:WP_019861505.1
COORDINATES: similar to AA sequence:RefSeq:WP_013529339.1
COORDINATES: similar to AA sequence:RefSeq:WP_015343230.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018115410.1
COORDINATES: similar to AA sequence:RefSeq:WP_013741455.1
TRAP transporter substrate-binding protein DctP
COORDINATES: similar to AA sequence:RefSeq:WP_018688484.1
COORDINATES: similar to AA sequence:RefSeq:WP_007008529.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0015556 - C4-dicarboxylate transmembrane transporter activity [Evidence IEA]
GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008281998.1
COORDINATES: similar to AA sequence:RefSeq:WP_009818128.1
COORDINATES: similar to AA sequence:RefSeq:WP_009818129.1
COORDINATES: similar to AA sequence:RefSeq:WP_009175686.1
COORDINATES: similar to AA sequence:RefSeq:WP_018097991.1
COORDINATES: similar to AA sequence:RefSeq:WP_009818132.1
COORDINATES: similar to AA sequence:RefSeq:WP_006700298.1
COORDINATES: similar to AA sequence:RefSeq:WP_017271789.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003528591.1
COORDINATES: similar to AA sequence:RefSeq:WP_007528825.1
COORDINATES: similar to AA sequence:RefSeq:WP_020009842.1
transporter substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_009127973.1
COORDINATES: protein motif:HMM:NF004636.0
COORDINATES: similar to AA sequence:RefSeq:WP_009652158.1
COORDINATES: similar to AA sequence:RefSeq:WP_009636067.1
COORDINATES: similar to AA sequence:RefSeq:WP_008812251.1
COORDINATES: similar to AA sequence:RefSeq:WP_008106198.1
COORDINATES: similar to AA sequence:RefSeq:WP_009461213.1
COORDINATES: similar to AA sequence:RefSeq:WP_007118278.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011538534.1
COORDINATES: similar to AA sequence:RefSeq:WP_006699940.1
COORDINATES: similar to AA sequence:RefSeq:WP_007789002.1
glycerol-3-phosphate dehydrogenase/oxidase
COORDINATES: similar to AA sequence:RefSeq:WP_013529475.1
COORDINATES: similar to AA sequence:RefSeq:WP_013529474.1
COORDINATES: similar to AA sequence:RefSeq:WP_004404130.1
COORDINATES: similar to AA sequence:RefSeq:WP_013529472.1
COORDINATES: similar to AA sequence:RefSeq:WP_011969240.1
COORDINATES: similar to AA sequence:RefSeq:WP_007121375.1
COORDINATES: similar to AA sequence:RefSeq:WP_017929891.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015416 - ABC-type phosphonate transporter activity [Evidence IEA]
GO:0015716 - organic phosphonate transport [Evidence IEA]
phosphonate ABC transporter, permease protein PhnE
COORDINATES: similar to AA sequence:RefSeq:WP_005852762.1
COORDINATES: similar to AA sequence:RefSeq:WP_018302992.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0015416 - ABC-type phosphonate transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
phosphonate ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018698479.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0043168 - anion binding [Evidence IEA]; GO:0043225 - ATPase-coupled inorganic anion transmembrane transporter activity [Evidence IEA]
phosphate/phosphite/phosphonate ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF012669.2
COORDINATES: similar to AA sequence:RefSeq:WP_011453885.1
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: protein motif:HMM:NF024883.2
GAF domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:NF014081.2
COORDINATES: protein motif:HMM:NF040043.1
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: similar to AA sequence:RefSeq:WP_017269758.1
COORDINATES: similar to AA sequence:RefSeq:WP_017271027.1
COORDINATES: protein motif:HMM:NF012706.2
COORDINATES: protein motif:HMM:NF016777.2
COORDINATES: similar to AA sequence:RefSeq:WP_018270475.1
COORDINATES: similar to AA sequence:RefSeq:WP_011457227.1
COORDINATES: protein motif:HMM:NF014893.2
COORDINATES: similar to AA sequence:RefSeq:WP_020051968.1
COORDINATES: similar to AA sequence:RefSeq:WP_008835843.1
COORDINATES: similar to AA sequence:RefSeq:WP_018448475.1
COORDINATES: similar to AA sequence:RefSeq:WP_008835841.1
COORDINATES: similar to AA sequence:RefSeq:WP_007816938.1
COORDINATES: similar to AA sequence:RefSeq:WP_007816940.1
COORDINATES: similar to AA sequence:RefSeq:WP_011982795.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611774.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
COORDINATES: protein motif:HMM:NF040248.1
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: similar to AA sequence:RefSeq:WP_012653753.1
COORDINATES: similar to AA sequence:RefSeq:WP_007608645.1
COORDINATES: similar to AA sequence:RefSeq:WP_007800804.1
COORDINATES: similar to AA sequence:RefSeq:WP_003511016.1
COORDINATES: similar to AA sequence:RefSeq:WP_018067204.1
COORDINATES: similar to AA sequence:RefSeq:WP_004407415.1
COORDINATES: similar to AA sequence:RefSeq:WP_019862426.1
COORDINATES: protein motif:HMM:NF021604.2
GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011453773.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_011453772.1
COORDINATES: similar to AA sequence:RefSeq:WP_013528936.1
COORDINATES: similar to AA sequence:RefSeq:WP_020285009.1
COORDINATES: similar to AA sequence:RefSeq:WP_009818312.1
COORDINATES: similar to AA sequence:RefSeq:WP_002723480.1
spermidine/putrescine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009818310.1
COORDINATES: similar to AA sequence:RefSeq:WP_009818309.1
COORDINATES: similar to AA sequence:RefSeq:WP_019998273.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008890628.1
COORDINATES: similar to AA sequence:RefSeq:WP_011397350.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_005854667.1
COORDINATES: similar to AA sequence:RefSeq:WP_008890631.1
COORDINATES: similar to AA sequence:RefSeq:WP_011046719.1
COORDINATES: protein motif:HMM:NF014385.2
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010141900.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009573161.1
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_005611435.1
GO:0019867 - outer membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009178468.1
COORDINATES: similar to AA sequence:RefSeq:WP_009178565.1
COORDINATES: protein motif:HMM:NF014567.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF033677.1
BapA prefix-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007205311.1
COORDINATES: similar to AA sequence:RefSeq:WP_009826822.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0006006 - glucose metabolic process [Evidence IEA]
ArsJ-associated glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_009803862.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
organoarsenical effux MFS transporter ArsJ
COORDINATES: similar to AA sequence:RefSeq:WP_018303525.1
COORDINATES: similar to AA sequence:RefSeq:WP_018303524.1
COORDINATES: similar to AA sequence:RefSeq:WP_018688222.1
COORDINATES: similar to AA sequence:RefSeq:WP_018303522.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_007823170.1
COORDINATES: similar to AA sequence:RefSeq:WP_020042538.1
COORDINATES: similar to AA sequence:RefSeq:WP_020056818.1
GO:0004180 - carboxypeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014188840.1
COORDINATES: similar to AA sequence:RefSeq:WP_006937585.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019956569.1
COORDINATES: similar to AA sequence:RefSeq:WP_010140080.1
COORDINATES: similar to AA sequence:RefSeq:WP_018698601.1
COORDINATES: similar to AA sequence:RefSeq:WP_006932014.1
COORDINATES: protein motif:HMM:NF033563.0
COORDINATES: protein motif:HMM:NF017985.2
COORDINATES: protein motif:HMM:NF015763.2
COORDINATES: similar to AA sequence:RefSeq:WP_008885716.1
COORDINATES: protein motif:HMM:NF039807.1
COORDINATES: similar to AA sequence:RefSeq:WP_019961453.1
COORDINATES: similar to AA sequence:RefSeq:WP_020045170.1
COORDINATES: similar to AA sequence:RefSeq:WP_008206604.1
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011047215.1
COORDINATES: similar to AA sequence:RefSeq:WP_010137263.1
COORDINATES: similar to AA sequence:RefSeq:WP_005864174.1
COORDINATES: protein motif:HMM:NF024742.2
COORDINATES: similar to AA sequence:RefSeq:WP_006008717.1
COORDINATES: protein motif:HMM:TIGR02601.1
autotransporter-associated beta strand repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018390033.1
COORDINATES: similar to AA sequence:RefSeq:WP_009734216.1
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
COORDINATES: protein motif:HMM:NF013652.2
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017515.2
capsular polysaccharide synthesis protein
COORDINATES: similar to AA sequence:RefSeq:WP_016915802.1
GO:0004462 - lactoylglutathione lyase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO:0051596 - methylglyoxal catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008209180.1
COORDINATES: similar to AA sequence:RefSeq:WP_005611198.1
COORDINATES: similar to AA sequence:RefSeq:WP_009804045.1
COORDINATES: protein motif:HMM:NF013014.2
COORDINATES: similar to AA sequence:RefSeq:WP_006940453.1
COORDINATES: similar to AA sequence:RefSeq:WP_008192243.1
COORDINATES: similar to AA sequence:RefSeq:WP_008884116.1
COORDINATES: similar to AA sequence:RefSeq:WP_008884894.1
COORDINATES: similar to AA sequence:RefSeq:WP_007798959.1
COORDINATES: similar to AA sequence:RefSeq:WP_006940445.1
COORDINATES: similar to AA sequence:RefSeq:WP_008191048.1
COORDINATES: similar to AA sequence:RefSeq:WP_009467821.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611905.1
COORDINATES: similar to AA sequence:RefSeq:WP_008922360.1
COORDINATES: similar to AA sequence:RefSeq:WP_005860587.1
COORDINATES: similar to AA sequence:RefSeq:WP_005860585.1
COORDINATES: similar to AA sequence:RefSeq:WP_005860583.1
COORDINATES: similar to AA sequence:RefSeq:WP_008967696.1
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014989399.1
COORDINATES: similar to AA sequence:RefSeq:WP_010400094.1
COORDINATES: similar to AA sequence:RefSeq:WP_012385749.1
COORDINATES: similar to AA sequence:RefSeq:WP_019085442.1
COORDINATES: similar to AA sequence:RefSeq:WP_007701431.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_013634931.1
GO:0050112 - inositol 2-dehydrogenase activity [Evidence IEA]
GO:0019310 - inositol catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007701426.1
GO:0016823 - hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)
COORDINATES: similar to AA sequence:RefSeq:WP_007701421.1
GO:0050114 - myo-inosose-2 dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010400104.1
COORDINATES: similar to AA sequence:RefSeq:WP_002724704.1
COORDINATES: similar to AA sequence:RefSeq:WP_009177832.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558894.1
COORDINATES: similar to AA sequence:RefSeq:WP_008231184.1
COORDINATES: similar to AA sequence:RefSeq:WP_008594650.1
COORDINATES: similar to AA sequence:RefSeq:WP_007008072.1
COORDINATES: similar to AA sequence:RefSeq:WP_011540032.1
COORDINATES: similar to AA sequence:RefSeq:WP_008562390.1
COORDINATES: protein motif:HMM:NF015431.2
LysR substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:TIGR02427.1
GO:0047570 - 3-oxoadipate enol-lactonase activity [Evidence IEA]
GO:0042952 - beta-ketoadipate pathway [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010138131.1
COORDINATES: similar to AA sequence:RefSeq:WP_010326680.1
GO:0016159 - muconolactone delta-isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010138129.1
COORDINATES: similar to AA sequence:RefSeq:WP_014821547.1
COORDINATES: similar to AA sequence:RefSeq:WP_010138125.1
GO:0070403 - NAD+ binding [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006227162.1
GO:0004061 - arylformamidase activity [Evidence IEA]
GO:0019441 - tryptophan catabolic process to kynurenine [Evidence IEA]
COORDINATES: protein motif:HMM:NF015682.2
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005862133.1
tripartite tricarboxylate transporter permease
COORDINATES: protein motif:HMM:NF018979.2
tripartite tricarboxylate transporter TctB family protein
COORDINATES: protein motif:HMM:NF015366.2
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018716631.1
C4-dicarboxylate TRAP transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007253669.1
COORDINATES: similar to AA sequence:RefSeq:WP_007253668.1
COORDINATES: similar to AA sequence:RefSeq:WP_012334404.1
COORDINATES: similar to AA sequence:RefSeq:WP_011102826.1
COORDINATES: similar to AA sequence:RefSeq:WP_014703567.1
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007812599.1
COORDINATES: similar to AA sequence:RefSeq:WP_006472050.1
COORDINATES: similar to AA sequence:RefSeq:WP_010660784.1
COORDINATES: similar to AA sequence:RefSeq:WP_004726034.1
iron-siderophore ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010659276.1
COORDINATES: similar to AA sequence:RefSeq:WP_012093424.1
GO:0008927 - mannonate dehydratase activity [Evidence IEA]
GO:0006064 - glucuronate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013960229.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396381.1
COORDINATES: similar to AA sequence:RefSeq:WP_020041976.1
COORDINATES: similar to AA sequence:RefSeq:WP_011567334.1
COORDINATES: similar to AA sequence:RefSeq:WP_003510763.1
COORDINATES: similar to AA sequence:RefSeq:WP_008595757.1
COORDINATES: similar to AA sequence:RefSeq:WP_014286114.1
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_015501563.1
GO:0004056 - argininosuccinate lyase activity [Evidence IEA]
GO:0042450 - arginine biosynthetic process via ornithine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014286112.1
COORDINATES: similar to AA sequence:RefSeq:WP_008595749.1
COORDINATES: similar to AA sequence:RefSeq:WP_015501560.1
COORDINATES: protein motif:HMM:NF012692.2
COORDINATES: similar to AA sequence:RefSeq:WP_014286108.1
COORDINATES: similar to AA sequence:RefSeq:WP_007823251.1
COORDINATES: similar to AA sequence:RefSeq:WP_009756274.1
COORDINATES: similar to AA sequence:RefSeq:WP_007823248.1
COORDINATES: similar to AA sequence:RefSeq:WP_009756276.1
glycerophosphodiester phosphodiesterase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007823244.1
COORDINATES: similar to AA sequence:RefSeq:WP_007823243.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611562.1
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: similar to AA sequence:RefSeq:WP_019410687.1
COORDINATES: similar to AA sequence:RefSeq:WP_007350118.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_008889929.1
COORDINATES: similar to AA sequence:RefSeq:WP_019410690.1
COORDINATES: similar to AA sequence:RefSeq:WP_020678122.1
COORDINATES: similar to AA sequence:RefSeq:WP_018716321.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009179300.1
COORDINATES: similar to AA sequence:RefSeq:WP_009175459.1
COORDINATES: similar to AA sequence:RefSeq:WP_009175488.1
COORDINATES: similar to AA sequence:RefSeq:WP_014625985.1
Lrp/AsnC ligand binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009723769.1
GO:0015385 - sodium:proton antiporter activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008281567.1
COORDINATES: similar to AA sequence:RefSeq:WP_008208306.1