Rhincodon typus isolate 14 chromosome 41, sRhiTyp1.1, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes; Rhincodontidae; Rhincodon.
REFSEQ INFORMATION: The reference sequence is identical to\nCM038838.1.\nAssembly name: sRhiTyp1.1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Squalomix on 2022/02/03. The\noriginal whole-genome shotgun project has the accession\nJAHMAH000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Squalomix\nAssembly Date :: 22-FEB-2021\nAssembly Method :: Supernova v. 2.1.1; P_RNA_scaffolder v.\n commit 7941e0f; Tigmint v. 1.1.2; ARKS v.\n 1.1.0; 3D-DNA v. 180922\nAssembly Name :: sRhiTyp1.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 46.7x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Rhincodon typus Annotation Release\n 101\nAnnotation Version :: 101\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
insulin-like growth factor-binding protein 5
COORDINATES: polyA evidence [ECO:0006239]
calcitonin gene-related peptide type 1 receptor-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC125487420, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
uncharacterized LOC125487420, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
uncharacterized LOC125487420, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
uncharacterized LOC125487420, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
uncharacterized LOC125487420, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
uncharacterized LOC125487420, transcript variant X6
uncharacterized LOC125487420, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 20 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
tumor necrosis factor receptor superfamily member 14-like, transcript variant X1
tumor necrosis factor receptor superfamily member 14-like, transcript variant X3
tumor necrosis factor receptor superfamily member 14-like, transcript variant X2
tumor necrosis factor receptor superfamily member 14-like isoform X1
tumor necrosis factor receptor superfamily member 14-like isoform X2
uncharacterized protein LOC109924443 isoform X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
histone acetyltransferase type B catalytic subunit
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
histone acetyltransferase type B catalytic subunit-like
myosin light polypeptide 6-like, transcript variant X1
myosin light polypeptide 6-like, transcript variant X2
myosin light polypeptide 6-like isoform X1
myosin light polypeptide 6-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
beta-1,4 N-acetylgalactosaminyltransferase 1-like
beta-1,4-N-acetyl-galactosaminyl transferase 1b
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins, and 82% coverage of the annotated genomic feature by RNAseq alignments
beta-1,4 N-acetylgalactosaminyltransferase 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcription factor Sp5-like, transcript variant X8
transcription factor Sp5-like, transcript variant X9
transcription factor Sp5-like, transcript variant X6
transcription factor Sp5-like, transcript variant X2
transcription factor Sp5-like, transcript variant X5
transcription factor Sp5-like, transcript variant X1
transcription factor Sp5-like, transcript variant X7
transcription factor Sp5-like, transcript variant X4
transcription factor Sp5-like, transcript variant X3
Golgi reassembly-stacking protein 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 5 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
rho guanine nucleotide exchange factor 25-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
nuclear receptor subfamily 4 group A member 1-like
trafficking regulator and scaffold protein tamalin
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
general receptor for phosphoinositides 1-associated scaffold protein
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA glycine (anticodon GCC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 117 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
natural resistance-associated macrophage protein 2-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
natural resistance-associated macrophage protein 2-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
natural resistance-associated macrophage protein 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 75% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
uncharacterized LOC125487390, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
uncharacterized LOC125487390, transcript variant X1
cytoplasmic dynein 1 intermediate chain 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
POU domain, class 6, transcription factor 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 1 Protein, and 79% coverage of the annotated genomic feature by RNAseq alignments
POU domain, class 6, transcription factor 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 5 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 18 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 37 Proteins, and 89% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 68 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 2 bases at 2 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: cysteine sulfinic acid decarboxylase
G-protein coupled receptor 182-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
G-protein coupled receptor 182-like, transcript variant X1
prostaglandin E synthase 3, transcript variant X1
prostaglandin E synthase 3, transcript variant X2
nascent polypeptide associated complex subunit alpha
nascent polypeptide-associated complex subunit alpha
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 17 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
bromodomain adjacent to zinc finger domain protein 2A-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: bromodomain adjacent to zinc finger domain protein 2A-like
cytochrome c oxidase assembly protein COX14 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
STE20/SPS1-related proline-alanine-rich protein kinase-like
LIM domain and actin-binding protein 1, transcript variant X2
LIM domain and actin-binding protein 1, transcript variant X4
LIM domain and actin-binding protein 1, transcript variant X1
LIM domain and actin-binding protein 1, transcript variant X3
LIM domain and actin-binding protein 1, transcript variant X5
LIM domain and actin-binding protein 1 isoform X2
LIM domain and actin-binding protein 1 isoform X1
LIM domain and actin-binding protein 1 isoform X3
uncharacterized LOC109926356, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
uncharacterized LOC109926356, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
protein FAM186B-like, transcript variant X2
protein FAM186B-like, transcript variant X1
cysteine/serine-rich nuclear protein 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
LETM1 domain containing 1, transcript variant X2
LETM1 domain containing 1, transcript variant X1
LETM1 domain containing 1, transcript variant X4
LETM1 domain containing 1, transcript variant X3
LETM1 domain-containing protein 1 isoform X2
LETM1 domain-containing protein 1 isoform X1
LETM1 domain-containing protein 1 isoform X4
LETM1 domain-containing protein 1 isoform X3
chymotrypsin-like elastase family member 1
polypeptide N-acetylgalactosaminyltransferase 3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 48 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 65% coverage of the annotated genomic feature by RNAseq alignments
electroneutral sodium bicarbonate exchanger 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 114 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
extended synaptotagmin-like protein 1a, transcript variant X1
extended synaptotagmin-like protein 1a, transcript variant X2
extended synaptotagmin-like protein 1a, transcript variant X3
zinc finger CCCH domain-containing protein 10-like, transcript variant X1
zinc finger CCCH domain-containing protein 10-like, transcript variant X2
zinc finger CCCH domain-containing protein 10-like
zinc finger CCCH domain-containing protein 10-like isoform X1
zinc finger CCCH domain-containing protein 10-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 88 Proteins, and 37% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 long SRA reads, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
zinc finger CCCH domain-containing protein 10-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
zinc finger CCCH domain-containing protein 10-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
zinc finger CCCH domain-containing protein 10-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 32 Proteins
DnaJ (Hsp40) homolog, subfamily C, member 22
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
spermatogenesis-associated serine-rich protein 2-like, transcript variant X3
spermatogenesis-associated serine-rich protein 2-like, transcript variant X2
spermatogenesis-associated serine-rich protein 2-like, transcript variant X4
spermatogenesis-associated serine-rich protein 2-like isoform X2
spermatogenesis-associated serine-rich protein 2-like, transcript variant X6
spermatogenesis-associated serine-rich protein 2-like, transcript variant X1
spermatogenesis-associated serine-rich protein 2-like isoform X1
spermatogenesis-associated serine-rich protein 2-like isoform X4
spermatogenesis-associated serine-rich protein 2-like, transcript variant X5
spermatogenesis-associated serine-rich protein 2-like isoform X3
microspherule protein 1, transcript variant X2
microspherule protein 1, transcript variant X6
microspherule protein 1, transcript variant X3
microspherule protein 1, transcript variant X1
microspherule protein 1, transcript variant X5
microspherule protein 1, transcript variant X4
premelanosome protein a, transcript variant X2
premelanosome protein a, transcript variant X1
cyclin-dependent kinase 2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 long SRA reads, 105 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
cyclin-dependent kinase 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 long SRA reads, 35 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
ras-related protein Rab-5B, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
ras-related protein Rab-5B, transcript variant X1
leucine-rich repeat flightless-interacting protein 2-like
sulfite oxidase, mitochondrial isoform X1
sulfite oxidase, mitochondrial isoform X2
IKAROS family zinc finger 4, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 56 long SRA reads, 34 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
IKAROS family zinc finger 4, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 46 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
receptor tyrosine-protein kinase erbB-4-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 60 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
receptor tyrosine-protein kinase erbB-4-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 60 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
receptor tyrosine-protein kinase erbB-4-like isoform X2
receptor tyrosine-protein kinase erbB-4-like isoform X1
uncharacterized LOC125487431, transcript variant X1
uncharacterized LOC125487431, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 15 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments
pleckstrin homology domain-containing family A member 3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 62% coverage of the annotated genomic feature by RNAseq alignments
TAR (HIV) RNA binding protein 2, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 long SRA reads, 7 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
TAR (HIV) RNA binding protein 2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
TAR (HIV) RNA binding protein 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 long SRA reads, 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
RISC-loading complex subunit tarbp2 isoform X1
RISC-loading complex subunit tarbp2 isoform X2
RISC-loading complex subunit tarbp2 isoform X3
coiled-coil domain containing 65, transcript variant X5
coiled-coil domain containing 65, transcript variant X4
coiled-coil domain containing 65, transcript variant X1
coiled-coil domain containing 65, transcript variant X2
coiled-coil domain containing 65, transcript variant X6
coiled-coil domain containing 65, transcript variant X3
FKBP prolyl isomerase 11, transcript variant X1
FKBP prolyl isomerase 11, transcript variant X2
FKBP prolyl isomerase 11, transcript variant X3
peptidyl-prolyl cis-trans isomerase FKBP11 isoform X1
peptidyl-prolyl cis-trans isomerase FKBP11 isoform X2
ADP-ribosylation factor 1-like, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 long SRA reads, 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
ADP-ribosylation factor 1-like, transcript variant X1
ADP-ribosylation factor 1-like, transcript variant X7
ADP-ribosylation factor 1-like, transcript variant X6
ADP-ribosylation factor 1-like, transcript variant X5
ADP-ribosylation factor 1-like, transcript variant X2
ADP-ribosylation factor 1-like, transcript variant X3
ADP-ribosylation factor 1-like, transcript variant X4
ADP-ribosylation factor 1-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 90% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
histone-lysine N-methyltransferase 2D-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 97% coverage of the annotated genomic feature by RNAseq alignments
5'-AMP-activated protein kinase subunit gamma-1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 long SRA reads, 72 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: histone-lysine N-methyltransferase 2D-like
Ras homolog, mTORC1 binding like 1, transcript variant X6
Ras homolog, mTORC1 binding like 1, transcript variant X5
Ras homolog, mTORC1 binding like 1, transcript variant X3
Ras homolog, mTORC1 binding like 1, transcript variant X2
Ras homolog, mTORC1 binding like 1, transcript variant X1
Ras homolog, mTORC1 binding like 1, transcript variant X4
ras homolog, mTORC1 binding like 1 isoform X3
ras homolog, mTORC1 binding like 1 isoform X2
ras homolog, mTORC1 binding like 1 isoform X1
ras homolog, mTORC1 binding like 1 isoform X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 38% coverage of the annotated genomic feature by RNAseq alignments
limb development membrane protein 1-like, transcript variant X1
limb development membrane protein 1-like, transcript variant X2
limb region 1 homolog-like protein isoform X1
limb region 1 homolog-like protein isoform X2
tubulin alpha-1C chain, transcript variant X1
tubulin alpha-1C chain, transcript variant X2
transmembrane protein 198-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transmembrane protein 198-like isoform X2
transmembrane protein 198-like, transcript variant X1
transmembrane protein 198-like isoform X1
PYM homolog 1, exon junction complex associated factor, transcript variant X1
PYM homolog 1, exon junction complex associated factor, transcript variant X2
eukaryotic translation initiation factor 4Ba
transfer RNA glutamic acid (anticodon UUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 61% coverage of the annotated genomic feature by RNAseq alignments
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 long SRA reads, 21 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
RNA-binding motif, single-stranded-interacting protein 2-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
RNA-binding motif, single-stranded-interacting protein 2-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
RNA-binding motif, single-stranded-interacting protein 2-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
RNA-binding motif, single-stranded-interacting protein 2-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
RNA-binding motif, single-stranded-interacting protein 2-like isoform X4
RNA-binding motif, single-stranded-interacting protein 3-like isoform X3
RNA-binding motif, single-stranded-interacting protein 2-like isoform X2
RNA-binding motif, single-stranded-interacting protein 2-like isoform X1
glycerol-3-phosphate dehydrogenase 1-like protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 80 long SRA reads, 57 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins
putative methyltransferase-like protein 7A, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 long SRA reads, 22 Proteins, and 84% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
putative methyltransferase-like protein 7A isoform X1
putative methyltransferase-like protein 7A, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
putative methyltransferase-like protein 7A isoform X2
sodium channel protein type 8 subunit alpha-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
sodium channel protein type 8 subunit alpha-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
sodium channel protein type 8 subunit alpha-like, transcript variant X2
sodium channel protein type 8 subunit alpha-like, transcript variant X1
sodium channel protein type 8 subunit alpha-like isoform X4
sodium channel protein type 8 subunit alpha-like isoform X3
sodium channel protein type 8 subunit alpha-like isoform X2
sodium channel protein type 8 subunit alpha-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 64% coverage of the annotated genomic feature by RNAseq alignments
zinc finger and BTB domain-containing protein 39, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 long SRA reads, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
zinc finger and BTB domain-containing protein 39, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 long SRA reads, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
zinc finger and BTB domain-containing protein 39
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 81% coverage of the annotated genomic feature by RNAseq alignments
biogenesis of lysosomal organelles complex-1, subunit 1
biogenesis of lysosome-related organelles complex 1 subunit 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 52 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
solute carrier family 11 member 2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 long SRA reads, 44 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
solute carrier family 11 member 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 long SRA reads, 44 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
HIG1 domain family member 1C-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
natural resistance-associated macrophage protein 2 isoform X1
natural resistance-associated macrophage protein 2 isoform X2
HIG1 domain family member 1C-like, transcript variant X3
HIG1 domain family member 1C-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
HIG1 domain family member 1C-like, transcript variant X1
HIG1 domain family member 1C-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
HIG1 domain family member 1C-like isoform X1
uncharacterized protein LOC109925297 isoform X2
uncharacterized protein LOC109925297 isoform X3
zinc finger and BTB domain-containing protein 39-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 long SRA reads, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 69% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC125487405, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
uncharacterized LOC125487405, transcript variant X2
methyltransferase 1, tRNA methylguanosine, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 long SRA reads, 13 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
methyltransferase 1, tRNA methylguanosine, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial
Ts translation elongation factor, mitochondrial
carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2-like, transcript variant X2
carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2-like isoform X2
carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2-like, transcript variant X1
carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments
poly(A) specific ribonuclease subunit PAN2
PAN2-PAN3 deadenylation complex catalytic subunit PAN2
inositol polyphosphate 1-phosphatase-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 146 Proteins, and 83% coverage of the annotated genomic feature by RNAseq alignments
ORMDL sphingolipid biosynthesis regulator 2, transcript variant X1
ORMDL sphingolipid biosynthesis regulator 2, transcript variant X3
ORMDL sphingolipid biosynthesis regulator 2, transcript variant X2
ORMDL sphingolipid biosynthesis regulator 2, transcript variant X4
DnaJ (Hsp40) homolog, subfamily C, member 14, transcript variant X3
DnaJ (Hsp40) homolog, subfamily C, member 14, transcript variant X4
DnaJ (Hsp40) homolog, subfamily C, member 14, transcript variant X1
DnaJ (Hsp40) homolog, subfamily C, member 14, transcript variant X2
nuclear envelope integral membrane protein 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 10 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
signal transducer and activator of transcription 5A-like
signal transducer and activator of transcription 1-alpha/beta-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
signal transducer and activator of transcription 1-alpha/beta-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
signal transducer and activator of transcription 1-alpha/beta-like isoform X1
signal transducer and activator of transcription 1-alpha/beta-like isoform X2
glutaminase liver isoform, mitochondrial-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: glutaminase liver isoform, mitochondrial-like
signal transducer and activator of transcription 3.1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
ring finger protein 41, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
ring finger protein 41, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
ring finger protein 41, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 61% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 long SRA reads, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns