Rhincodon typus isolate 14 chromosome 39, sRhiTyp1.1, whole genome shotgun sequence.
type: Entry
definition: Rhincodon typus isolate 14 chromosome 39, sRhiTyp1.1, whole genome shotgun sequence.
sequence version: NC_063370.1
sequence date: 2022-06-09
sequence: sequence
division: CON
label: NC_063370.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA842712
dblink: SAMN19519256
keyword: WGS
keyword: RefSeq
source: Rhincodon typus (whale shark)
organism: Rhincodon typus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes; Rhincodontidae; Rhincodon.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM038836.1.\nAssembly name: sRhiTyp1.1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Squalomix on 2022/02/03. The\noriginal whole-genome shotgun project has the accession\nJAHMAH000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Squalomix\nAssembly Date :: 22-FEB-2021\nAssembly Method :: Supernova v. 2.1.1; P_RNA_scaffolder v.\n commit 7941e0f; Tigmint v. 1.1.2; ARKS v.\n 1.1.0; 3D-DNA v. 180922\nAssembly Name :: sRhiTyp1.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 46.7x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Rhincodon typus Annotation Release\n 101\nAnnotation Version :: 101\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 18121539
topology: linear
so has quality: SO_0000987
location: 1..18121539
location: region:1-18121539:1
RO_0002162: 259920

NC_063370
type: RefSeq
SIO_000068: refseq

PRJNA842712
type: BioProject
SIO_000068: bioproject

SAMN19519256
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18121539:1
position: 18121539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18121539:1:source
so part of: sequence
organism: Rhincodon typus
mol type: genomic DNA
isolate: 14
chromosome: 39
sex: male
tissue type: blood
dev stage: adult
collected by: 2018-05-24

259920
type: Taxonomy
SIO_000068: taxonomy

LOC125487315
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC125487315
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(9663..13886)
location: region:9663-13886:-1
so has part: feature:9663-13886:-1:exon
subclass of: SO_0000010

125487315
type: Gene
SIO_000068: ncbigene

position:9663:-1
position: 9663
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13886:-1
position: 13886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9663-13886:-1:exon

LOC125487315
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC125487315
product: latent-transforming growth factor beta-binding protein 4-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XM_048618395.1
SIO_010081: LOC125487315
subclass of: SO_0000673
so part of: LOC125487315
location: complement(join(9663..11325,12216..12365,13076..13570,13739..13886))
location: region:9663-13886:-1
so has part: feature:13739-13886:-1:exon
so has part: feature:13076-13570:-1:exon
so has part: feature:12216-12365:-1:exon
so has part: feature:9663-11325:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13739-13886:-1:exon

position:13739:-1
position: 13739
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:13076-13570:-1:exon

position:13076:-1
position: 13076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13570:-1
position: 13570
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:12216-12365:-1:exon

position:12216:-1
position: 12216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12365:-1
position: 12365
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:9663-11325:-1:exon

position:11325:-1
position: 11325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125487315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC125487315
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: latent-transforming growth factor beta-binding protein 4-like
translation: MALCWQEVTVNLLCKRPFLERQTTYTECCCRYGEAWGMDCALCPARNTEYHNELCNYLSMPLSEDEDFSQGLEYENYELPNGPEFPPDSLSRYRPRGYVPVPPQIGDGRDYRPPEREPFLPRDSLPRRPPYDSRQLRSGTAYRRQSSPNRRRYQTQSRQLGQGYSTRSIQTHVPDREADQPWRRYQLREPVRAAPEFRSPSVPLLVSSNEEYDNQFQRYEGLQAEECGILTGCENGKCIRVPEGFTCACDDGYQLDMTKMACVDINECDEVDDPKTLCRNAKCANTDGSYRCICLRGYVLSRQPNYCVPVEQRA
SIO_010081: LOC125487315
subclass of: SO_0000673
so part of: LOC125487315
location: complement(join(11171..11325,12216..12365,13076..13570,13739..13883))
location: region:11171-13883:-1
so has part: feature:13739-13883:-1:exon
so has part: feature:13076-13570:-1:exon
so has part: feature:12216-12365:-1:exon
so has part: feature:11171-11325:-1:exon

XP_048474352.1
type: Protein
SIO_000068: ncbiprotein

position:11171:-1
position: 11171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13883:-1
position: 13883
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13739-13883:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:13076-13570:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:12216-12365:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11171-11325:-1:exon

LOC109919697
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC109919697
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 24921..87937
location: region:24921-87937:1
so has part: feature:24921-87937:1:exon
subclass of: SO_0000010

109919697
type: Gene
SIO_000068: ncbigene

position:24921:1
position: 24921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:87937:1
position: 87937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24921-87937:1:exon

LOC109919697
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109919697
product: latent-transforming growth factor beta-binding protein 2-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_048618189.1
SIO_010081: LOC109919697
subclass of: SO_0000673
so part of: LOC109919697
location: join(24921..24948,25240..25412,48854..49078,56284..56525,59040..59142,65700..65750,67553..67675,74721..74885,77428..77589,77816..77893,79328..79459,79886..80011,80930..81049,81489..81614,86200..86325,87038..87160,87652..87780,87894..87937)
location: region:24921-87937:1
so has part: feature:24921-24948:1:exon
so has part: feature:25240-25412:1:exon
so has part: feature:48854-49078:1:exon
so has part: feature:56284-56525:1:exon
so has part: feature:59040-59142:1:exon
so has part: feature:65700-65750:1:exon
so has part: feature:67553-67675:1:exon
so has part: feature:74721-74885:1:exon
so has part: feature:77428-77589:1:exon
so has part: feature:77816-77893:1:exon
so has part: feature:79328-79459:1:exon
so has part: feature:79886-80011:1:exon
so has part: feature:80930-81049:1:exon
so has part: feature:81489-81614:1:exon
so has part: feature:86200-86325:1:exon
so has part: feature:87038-87160:1:exon
so has part: feature:87652-87780:1:exon
so has part: feature:87894-87937:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:24921-24948:1:exon

position:24948:1
position: 24948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:25240-25412:1:exon

position:25240:1
position: 25240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25412:1
position: 25412
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:48854-49078:1:exon

position:48854:1
position: 48854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49078:1
position: 49078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:56284-56525:1:exon

position:56284:1
position: 56284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:56525:1
position: 56525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:59040-59142:1:exon

position:59040:1
position: 59040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:59142:1
position: 59142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:65700-65750:1:exon

position:65700:1
position: 65700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:65750:1
position: 65750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:67553-67675:1:exon

position:67553:1
position: 67553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67675:1
position: 67675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:74721-74885:1:exon

position:74721:1
position: 74721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:74885:1
position: 74885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:77428-77589:1:exon

position:77428:1
position: 77428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:77589:1
position: 77589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:77816-77893:1:exon

position:77816:1
position: 77816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:77893:1
position: 77893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:79328-79459:1:exon

position:79328:1
position: 79328
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:79459:1
position: 79459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:79886-80011:1:exon

position:79886:1
position: 79886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:80011:1
position: 80011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:80930-81049:1:exon

position:80930:1
position: 80930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:81049:1
position: 81049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:81489-81614:1:exon

position:81489:1
position: 81489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:81614:1
position: 81614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:86200-86325:1:exon

position:86200:1
position: 86200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:86325:1
position: 86325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:87038-87160:1:exon

position:87038:1
position: 87038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:87160:1
position: 87160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:87652-87780:1:exon

position:87652:1
position: 87652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:87780:1
position: 87780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:87894-87937:1:exon

position:87894:1
position: 87894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109919697
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109919697
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: latent-transforming growth factor beta-binding protein 2-like
translation: MNVKQAQSVLLRKLTLSSQRSVKIAKRLPTPSDATANTKSQGSKAYEESQPRVKQASIKVLCLLQCQNGGVCVRKDRCHCPPGFTGKFCQISTQSASSSKVPDSFPTGDPNRQRKPRVETVYTLPLSNQQLSNQTDRLIPSIVNLRVQHPPEVSVKVHQVTQVVGEKHTNSAQLHVQEPTSQRAPQERQGPLTAAPRLDAESVFGYCFTEITSGQCASPLTGLRTVERCCQGGGVGWGVTECIQCPITPGNDCPHGFEKTADGQCQDIDECSLPGICQNGKCLNVRGSYSCVCSRGFVQDTSKSRCISQQVISLTKGPCYRIWRSGSCSLPVRQNITKQICCCSRVGKAWGTECQKCPSPLTEGFREICPAGSGYHYIRSDLRFSNRGPGERDYGITNVDRASLTSTSAPFVQPTQAPGLRETASTVRTSPTTAAVPRTHRPAPEVHICHRMPQICGPGHCVIRQLGYTCACNTGFQLNLERSHCVDTDECRVRPRPCLNGRCVNTVGSFHCACSKGFSANSHRTDCVDIDECLDISTCPNAECVNSVGSFRCLPCPTGYRIQNRKCSDIDECVNAAPCGNSGRCVNTEGSYQCDCNPGYRQSADGNRCADINECFEGDFCAPYGECLNSVGSYTCLCAEGFTTSADLSTCLDVDECTQPGVCDRGSCTNTVGSFECVCEPGFLVDEDRSQCFDLDECTEYPTICGSKRCENIAGSFQCITDCSEGFELSPAQDCIAIGYLTRHAQGRGL
SIO_010081: LOC109919697
subclass of: SO_0000673
so part of: LOC109919697
location: join(24944..24948,25240..25412,48854..49078,56284..56525,59040..59142,65700..65750,67553..67675,74721..74885,77428..77589,77816..77893,79328..79459,79886..80011,80930..81049,81489..81614,86200..86325,87038..87160,87652..87780,87894..87937)
location: region:24944-87937:1
so has part: feature:24944-24948:1:exon
so has part: feature:25240-25412:1:exon
so has part: feature:48854-49078:1:exon
so has part: feature:56284-56525:1:exon
so has part: feature:59040-59142:1:exon
so has part: feature:65700-65750:1:exon
so has part: feature:67553-67675:1:exon
so has part: feature:74721-74885:1:exon
so has part: feature:77428-77589:1:exon
so has part: feature:77816-77893:1:exon
so has part: feature:79328-79459:1:exon
so has part: feature:79886-80011:1:exon
so has part: feature:80930-81049:1:exon
so has part: feature:81489-81614:1:exon
so has part: feature:86200-86325:1:exon
so has part: feature:87038-87160:1:exon
so has part: feature:87652-87780:1:exon
so has part: feature:87894-87937:1:exon

XP_048474146.1
type: Protein
SIO_000068: ncbiprotein

position:24944:1
position: 24944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24944-24948:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:25240-25412:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:48854-49078:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:56284-56525:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:59040-59142:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:65700-65750:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:67553-67675:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:74721-74885:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:77428-77589:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:77816-77893:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:79328-79459:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:79886-80011:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:80930-81049:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:81489-81614:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:86200-86325:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:87038-87160:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:87652-87780:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:87894-87937:1:exon

LOC109929263
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC109929263
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 122116..154839
location: region:122116-154839:1
so has part: feature:122116-154839:1:exon
subclass of: SO_0000010

109929263
type: Gene
SIO_000068: ncbigene

position:122116:1
position: 122116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:154839:1
position: 154839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:122116-154839:1:exon

LOC109929263
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109929263
product: estrogen-related receptor gamma-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 89 Proteins, and 29% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_048618321.1
SIO_010081: LOC109929263
subclass of: SO_0000673
so part of: LOC109929263
location: join(122116..122181,123753..124126,132914..133030,143659..143769,144378..144539,150242..150511,154595..154839)
location: region:122116-154839:1
so has part: feature:122116-122181:1:exon
so has part: feature:123753-124126:1:exon
so has part: feature:132914-133030:1:exon
so has part: feature:143659-143769:1:exon
so has part: feature:144378-144539:1:exon
so has part: feature:150242-150511:1:exon
so has part: feature:154595-154839:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:122116-122181:1:exon

position:122181:1
position: 122181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:123753-124126:1:exon

position:123753:1
position: 123753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:124126:1
position: 124126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:132914-133030:1:exon

position:132914:1
position: 132914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:133030:1
position: 133030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:143659-143769:1:exon

position:143659:1
position: 143659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:143769:1
position: 143769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:144378-144539:1:exon

position:144378:1
position: 144378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:144539:1
position: 144539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:150242-150511:1:exon

position:150242:1
position: 150242
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:150511:1
position: 150511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:154595-154839:1:exon

position:154595:1
position: 154595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109929263
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109929263
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: estrogen-related receptor gamma-like
translation: MFLCRKSVEDQHTESCVKMEPWSPVPAAVSPSVLSQGSTVYGVTQSGMSQGLAFPGSITNNFNCCRKRYEDCPSGLIGDGSLKGDHSLSSVPKRLCLVCGDTASGYHYGVASCEACKAFFKRTIQGNIDYSCPARNDCEITKRRRKSCQSCRFMKCLKVGMMKEGVRLDRVRGGRQKYRRRFEESTVGYLNSQCCQLSKKSGNKIVSHLLLVEPDKIFAMADPTAPENDVKVLTTLCDLVDRELVIIINWAKHVPGFSTLSLGDQMGLLQSAWMEVLILGLVFRSLPYEEGLVYADNLVLEREQCRMVGLLDLYCTLLQLITKYRKLQLDKEEFVTLKAMALANSDSMSIENVEAIQNLQDLLHEALQDYETDQHLADPHRSGKLLMTLPLLRQTANKAIQNFRRVVTEGKVPMHKLFLEMLEAKA
SIO_010081: LOC109929263
subclass of: SO_0000673
so part of: LOC109929263
location: join(122180..122181,123753..124126,132914..133030,143659..143769,144378..144539,150242..150511,154595..154839)
location: region:122180-154839:1
so has part: feature:122180-122181:1:exon
so has part: feature:123753-124126:1:exon
so has part: feature:132914-133030:1:exon
so has part: feature:143659-143769:1:exon
so has part: feature:144378-144539:1:exon
so has part: feature:150242-150511:1:exon
so has part: feature:154595-154839:1:exon

XP_048474278.1
type: Protein
SIO_000068: ncbiprotein

position:122180:1
position: 122180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:122180-122181:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:123753-124126:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:132914-133030:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:143659-143769:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:144378-144539:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:150242-150511:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:154595-154839:1:exon

shkbp1
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: shkbp1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(160941..197164)
location: region:160941-197164:-1
so has part: feature:160941-197164:-1:exon
subclass of: SO_0000010

109929262
type: Gene
SIO_000068: ncbigene

position:160941:-1
position: 160941
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:197164:-1
position: 197164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:160941-197164:-1:exon

shkbp1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: shkbp1
product: SH3KBP1 binding protein 1, transcript variant X4
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618281.1
SIO_010081: shkbp1
subclass of: SO_0000673
so part of: shkbp1
location: complement(join(160941..162075,162455..162584,164370..164554,165703..165799,166867..167022,168380..168550,171445..171561,172285..172372,172456..172571,180117..180307,181006..181096,182531..182695,182929..183009,187599..187657,188262..188335,188488..188533,196997..197164))
location: region:160941-197164:-1
so has part: feature:196997-197164:-1:exon
so has part: feature:188488-188533:-1:exon
so has part: feature:188262-188335:-1:exon
so has part: feature:187599-187657:-1:exon
so has part: feature:182929-183009:-1:exon
so has part: feature:182531-182695:-1:exon
so has part: feature:181006-181096:-1:exon
so has part: feature:180117-180307:-1:exon
so has part: feature:172456-172571:-1:exon
so has part: feature:172285-172372:-1:exon
so has part: feature:171445-171561:-1:exon
so has part: feature:168380-168550:-1:exon
so has part: feature:166867-167022:-1:exon
so has part: feature:165703-165799:-1:exon
so has part: feature:164370-164554:-1:exon
so has part: feature:162455-162584:-1:exon
so has part: feature:160941-162075:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:196997-197164:-1:exon

position:196997:-1
position: 196997
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:188488-188533:-1:exon

position:188488:-1
position: 188488
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:188533:-1
position: 188533
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:188262-188335:-1:exon

position:188262:-1
position: 188262
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:188335:-1
position: 188335
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:187599-187657:-1:exon

position:187599:-1
position: 187599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:187657:-1
position: 187657
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:182929-183009:-1:exon

position:182929:-1
position: 182929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:183009:-1
position: 183009
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:182531-182695:-1:exon

position:182531:-1
position: 182531
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:182695:-1
position: 182695
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:181006-181096:-1:exon

position:181006:-1
position: 181006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:181096:-1
position: 181096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:180117-180307:-1:exon

position:180117:-1
position: 180117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:180307:-1
position: 180307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:172456-172571:-1:exon

position:172456:-1
position: 172456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:172571:-1
position: 172571
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:172285-172372:-1:exon

position:172285:-1
position: 172285
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:172372:-1
position: 172372
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:171445-171561:-1:exon

position:171445:-1
position: 171445
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:171561:-1
position: 171561
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:168380-168550:-1:exon

position:168380:-1
position: 168380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:168550:-1
position: 168550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:166867-167022:-1:exon

position:166867:-1
position: 166867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:167022:-1
position: 167022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:165703-165799:-1:exon

position:165703:-1
position: 165703
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:165799:-1
position: 165799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:164370-164554:-1:exon

position:164370:-1
position: 164370
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:164554:-1
position: 164554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:162455-162584:-1:exon

position:162455:-1
position: 162455
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:162584:-1
position: 162584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:160941-162075:-1:exon

position:162075:-1
position: 162075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

shkbp1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: shkbp1
product: SH3KBP1 binding protein 1, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618278.1
SIO_010081: shkbp1
subclass of: SO_0000673
so part of: shkbp1
location: complement(join(160941..162075,162455..162584,164370..164554,165703..165799,166867..167022,168380..168550,171445..171561,172285..172372,172456..172571,180117..180307,181006..181096,182531..182695,182929..183009,187599..187657,188262..188335,188488..188533,188787..188840,196997..197164))
location: region:160941-197164:-1
so has part: feature:196997-197164:-1:exon
so has part: feature:188787-188840:-1:exon
so has part: feature:188488-188533:-1:exon
so has part: feature:188262-188335:-1:exon
so has part: feature:187599-187657:-1:exon
so has part: feature:182929-183009:-1:exon
so has part: feature:182531-182695:-1:exon
so has part: feature:181006-181096:-1:exon
so has part: feature:180117-180307:-1:exon
so has part: feature:172456-172571:-1:exon
so has part: feature:172285-172372:-1:exon
so has part: feature:171445-171561:-1:exon
so has part: feature:168380-168550:-1:exon
so has part: feature:166867-167022:-1:exon
so has part: feature:165703-165799:-1:exon
so has part: feature:164370-164554:-1:exon
so has part: feature:162455-162584:-1:exon
so has part: feature:160941-162075:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:196997-197164:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:188787-188840:-1:exon

position:188787:-1
position: 188787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:188840:-1
position: 188840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:188488-188533:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:188262-188335:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:187599-187657:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:182929-183009:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:182531-182695:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:181006-181096:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:180117-180307:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:172456-172571:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:172285-172372:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:171445-171561:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:168380-168550:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:166867-167022:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:165703-165799:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:164370-164554:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:162455-162584:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:160941-162075:-1:exon

shkbp1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: shkbp1
product: SH3KBP1 binding protein 1, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618279.1
SIO_010081: shkbp1
subclass of: SO_0000673
so part of: shkbp1
location: complement(join(160941..162075,162455..162584,164370..164554,165703..165799,166867..167022,168380..168550,171445..171561,172285..172372,172456..172571,180117..180307,181006..181096,182531..182695,182929..183009,187599..187657,188262..188335,188488..188533,188787..188840,188989..189782,196997..197127))
location: region:160941-197127:-1
so has part: feature:196997-197127:-1:exon
so has part: feature:188989-189782:-1:exon
so has part: feature:188787-188840:-1:exon
so has part: feature:188488-188533:-1:exon
so has part: feature:188262-188335:-1:exon
so has part: feature:187599-187657:-1:exon
so has part: feature:182929-183009:-1:exon
so has part: feature:182531-182695:-1:exon
so has part: feature:181006-181096:-1:exon
so has part: feature:180117-180307:-1:exon
so has part: feature:172456-172571:-1:exon
so has part: feature:172285-172372:-1:exon
so has part: feature:171445-171561:-1:exon
so has part: feature:168380-168550:-1:exon
so has part: feature:166867-167022:-1:exon
so has part: feature:165703-165799:-1:exon
so has part: feature:164370-164554:-1:exon
so has part: feature:162455-162584:-1:exon
so has part: feature:160941-162075:-1:exon

position:197127:-1
position: 197127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:196997-197127:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:188989-189782:-1:exon

position:188989:-1
position: 188989
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:189782:-1
position: 189782
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:188787-188840:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:188488-188533:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:188262-188335:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:187599-187657:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:182929-183009:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:182531-182695:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:181006-181096:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:180117-180307:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:172456-172571:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:172285-172372:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:171445-171561:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:168380-168550:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:166867-167022:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:165703-165799:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:164370-164554:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:162455-162584:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:160941-162075:-1:exon

shkbp1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: shkbp1
product: SH3KBP1 binding protein 1, transcript variant X3
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618280.1
SIO_010081: shkbp1
subclass of: SO_0000673
so part of: shkbp1
location: complement(join(160941..162075,162455..162584,164370..164554,165703..165799,166867..167022,168380..168550,171445..171561,172285..172372,172456..172571,180117..180307,181006..181096,182531..182695,182929..183009,187599..187657,188262..188335,188488..188533,188787..188840,196904..196986))
location: region:160941-196986:-1
so has part: feature:196904-196986:-1:exon
so has part: feature:188787-188840:-1:exon
so has part: feature:188488-188533:-1:exon
so has part: feature:188262-188335:-1:exon
so has part: feature:187599-187657:-1:exon
so has part: feature:182929-183009:-1:exon
so has part: feature:182531-182695:-1:exon
so has part: feature:181006-181096:-1:exon
so has part: feature:180117-180307:-1:exon
so has part: feature:172456-172571:-1:exon
so has part: feature:172285-172372:-1:exon
so has part: feature:171445-171561:-1:exon
so has part: feature:168380-168550:-1:exon
so has part: feature:166867-167022:-1:exon
so has part: feature:165703-165799:-1:exon
so has part: feature:164370-164554:-1:exon
so has part: feature:162455-162584:-1:exon
so has part: feature:160941-162075:-1:exon

position:196986:-1
position: 196986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:196904-196986:-1:exon

position:196904:-1
position: 196904
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:188787-188840:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:188488-188533:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:188262-188335:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:187599-187657:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:182929-183009:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:182531-182695:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:181006-181096:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:180117-180307:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:172456-172571:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:172285-172372:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:171445-171561:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:168380-168550:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:166867-167022:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:165703-165799:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:164370-164554:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:162455-162584:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:160941-162075:-1:exon

shkbp1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: shkbp1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SH3KBP1-binding protein 1 isoform X4
translation: MANVAQPGEIIHLNVGGKSLLSGRISTLKDETGAIFIDRDPTVFTSILNFLRTKELDARDVNIATLRHEAEFYGIAPLVRRLELCEDLERSSCGNVLFHGYLPPPVIPTMRQNRHSLAGPQFVGSRQEAADRVPVRRSNTMPPNLGNAGILGKLLEQRGNGLIANPGMVRIVRGHHNWIAVVYTQFVVCYRLKESSGWQQVFSSPRLDWVIERVALNAKVLGGSLGDNDKMVAVASCSEIILWAIHEGGTGNEIGTFSLGVPVEALFFVGNQLIATSHTGKVGVWNAVTKHWQIQDVVPINSYDTAGSLLILGCNNGSIYYIDVQKFPLRMKDNDLLVTELYCDPYEDAITALSVYLTPKTSDSGNWIEIAYGTSSGMVRVIVQHPETVGSGPQLFQTFSVHRSPITKIKLSEKNLISVCADSNHVRTWTVTRFRGMISTQPGSTPLASFKVLSLEDLDGHGGCSVGLEIGPFGERDDEQVFIQKVVPDTNQLFVRLSSTGKRICEISSVDGTAITAFTVHECEGSSRISSRARRYLFTGHTDGSIQMWDLTTAMETSGKTPQRDSGGPTEQELLRHLEQCDIALSRTPDMSPAESLAHPSMLRASSSQFQTVDGFRERLVRSGTESIRRDSPMVLRQQERFSSVCSLQSYVASRTSLDKGDVSSGSPRQVRLHSSCIRAESPSGENATAEGDGRTGHRGSFVERCQELVRCTELHGSMDLRRFSHESDRLLNRNRTLGQSGSVQGLKAVSPSPTQSIRTVPPNVPSIPSVEPGLSVTSPLSPTMESATANRPRMNETSF
SIO_010081: shkbp1
subclass of: SO_0000673
so part of: shkbp1
location: complement(join(161496..162075,162455..162584,164370..164554,165703..165799,166867..167022,168380..168550,171445..171561,172285..172372,172456..172571,180117..180307,181006..181096,182531..182695,182929..183009,187599..187657,188262..188335,188488..188533,196997..197052))
location: region:161496-197052:-1
so has part: feature:196997-197052:-1:exon
so has part: feature:188488-188533:-1:exon
so has part: feature:188262-188335:-1:exon
so has part: feature:187599-187657:-1:exon
so has part: feature:182929-183009:-1:exon
so has part: feature:182531-182695:-1:exon
so has part: feature:181006-181096:-1:exon
so has part: feature:180117-180307:-1:exon
so has part: feature:172456-172571:-1:exon
so has part: feature:172285-172372:-1:exon
so has part: feature:171445-171561:-1:exon
so has part: feature:168380-168550:-1:exon
so has part: feature:166867-167022:-1:exon
so has part: feature:165703-165799:-1:exon
so has part: feature:164370-164554:-1:exon
so has part: feature:162455-162584:-1:exon
so has part: feature:161496-162075:-1:exon

XP_048474238.1
type: Protein
SIO_000068: ncbiprotein

position:161496:-1
position: 161496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:197052:-1
position: 197052
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:196997-197052:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:188488-188533:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:188262-188335:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:187599-187657:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:182929-183009:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:182531-182695:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:181006-181096:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:180117-180307:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:172456-172571:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:172285-172372:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:171445-171561:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:168380-168550:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:166867-167022:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:165703-165799:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:164370-164554:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:162455-162584:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:161496-162075:-1:exon

shkbp1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: shkbp1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SH3KBP1-binding protein 1 isoform X1
translation: MANVAQPGEIIHLNVGGKRFSSSRQTLTWIPDSFFSSLLSGRISTLKDETGAIFIDRDPTVFTSILNFLRTKELDARDVNIATLRHEAEFYGIAPLVRRLELCEDLERSSCGNVLFHGYLPPPVIPTMRQNRHSLAGPQFVGSRQEAADRVPVRRSNTMPPNLGNAGILGKLLEQRGNGLIANPGMVRIVRGHHNWIAVVYTQFVVCYRLKESSGWQQVFSSPRLDWVIERVALNAKVLGGSLGDNDKMVAVASCSEIILWAIHEGGTGNEIGTFSLGVPVEALFFVGNQLIATSHTGKVGVWNAVTKHWQIQDVVPINSYDTAGSLLILGCNNGSIYYIDVQKFPLRMKDNDLLVTELYCDPYEDAITALSVYLTPKTSDSGNWIEIAYGTSSGMVRVIVQHPETVGSGPQLFQTFSVHRSPITKIKLSEKNLISVCADSNHVRTWTVTRFRGMISTQPGSTPLASFKVLSLEDLDGHGGCSVGLEIGPFGERDDEQVFIQKVVPDTNQLFVRLSSTGKRICEISSVDGTAITAFTVHECEGSSRISSRARRYLFTGHTDGSIQMWDLTTAMETSGKTPQRDSGGPTEQELLRHLEQCDIALSRTPDMSPAESLAHPSMLRASSSQFQTVDGFRERLVRSGTESIRRDSPMVLRQQERFSSVCSLQSYVASRTSLDKGDVSSGSPRQVRLHSSCIRAESPSGENATAEGDGRTGHRGSFVERCQELVRCTELHGSMDLRRFSHESDRLLNRNRTLGQSGSVQGLKAVSPSPTQSIRTVPPNVPSIPSVEPGLSVTSPLSPTMESATANRPRMNETSF
SIO_010081: shkbp1
subclass of: SO_0000673
so part of: shkbp1
location: complement(join(161496..162075,162455..162584,164370..164554,165703..165799,166867..167022,168380..168550,171445..171561,172285..172372,172456..172571,180117..180307,181006..181096,182531..182695,182929..183009,187599..187657,188262..188335,188488..188533,188787..188840,196997..197052))
location: region:161496-197052:-1
so has part: feature:196997-197052:-1:exon
so has part: feature:188787-188840:-1:exon
so has part: feature:188488-188533:-1:exon
so has part: feature:188262-188335:-1:exon
so has part: feature:187599-187657:-1:exon
so has part: feature:182929-183009:-1:exon
so has part: feature:182531-182695:-1:exon
so has part: feature:181006-181096:-1:exon
so has part: feature:180117-180307:-1:exon
so has part: feature:172456-172571:-1:exon
so has part: feature:172285-172372:-1:exon
so has part: feature:171445-171561:-1:exon
so has part: feature:168380-168550:-1:exon
so has part: feature:166867-167022:-1:exon
so has part: feature:165703-165799:-1:exon
so has part: feature:164370-164554:-1:exon
so has part: feature:162455-162584:-1:exon
so has part: feature:161496-162075:-1:exon

XP_048474235.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:196997-197052:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:188787-188840:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:188488-188533:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:188262-188335:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:187599-187657:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:182929-183009:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:182531-182695:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:181006-181096:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:180117-180307:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:172456-172571:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:172285-172372:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:171445-171561:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:168380-168550:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:166867-167022:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:165703-165799:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:164370-164554:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:162455-162584:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:161496-162075:-1:exon

shkbp1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: shkbp1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SH3KBP1-binding protein 1 isoform X3
translation: MFSSSRQTLTWIPDSFFSSLLSGRISTLKDETGAIFIDRDPTVFTSILNFLRTKELDARDVNIATLRHEAEFYGIAPLVRRLELCEDLERSSCGNVLFHGYLPPPVIPTMRQNRHSLAGPQFVGSRQEAADRVPVRRSNTMPPNLGNAGILGKLLEQRGNGLIANPGMVRIVRGHHNWIAVVYTQFVVCYRLKESSGWQQVFSSPRLDWVIERVALNAKVLGGSLGDNDKMVAVASCSEIILWAIHEGGTGNEIGTFSLGVPVEALFFVGNQLIATSHTGKVGVWNAVTKHWQIQDVVPINSYDTAGSLLILGCNNGSIYYIDVQKFPLRMKDNDLLVTELYCDPYEDAITALSVYLTPKTSDSGNWIEIAYGTSSGMVRVIVQHPETVGSGPQLFQTFSVHRSPITKIKLSEKNLISVCADSNHVRTWTVTRFRGMISTQPGSTPLASFKVLSLEDLDGHGGCSVGLEIGPFGERDDEQVFIQKVVPDTNQLFVRLSSTGKRICEISSVDGTAITAFTVHECEGSSRISSRARRYLFTGHTDGSIQMWDLTTAMETSGKTPQRDSGGPTEQELLRHLEQCDIALSRTPDMSPAESLAHPSMLRASSSQFQTVDGFRERLVRSGTESIRRDSPMVLRQQERFSSVCSLQSYVASRTSLDKGDVSSGSPRQVRLHSSCIRAESPSGENATAEGDGRTGHRGSFVERCQELVRCTELHGSMDLRRFSHESDRLLNRNRTLGQSGSVQGLKAVSPSPTQSIRTVPPNVPSIPSVEPGLSVTSPLSPTMESATANRPRMNETSF
SIO_010081: shkbp1
subclass of: SO_0000673
so part of: shkbp1
location: complement(join(161496..162075,162455..162584,164370..164554,165703..165799,166867..167022,168380..168550,171445..171561,172285..172372,172456..172571,180117..180307,181006..181096,182531..182695,182929..183009,187599..187657,188262..188335,188488..188533,188787..188840,196904..196905))
location: region:161496-196905:-1
so has part: feature:196904-196905:-1:exon
so has part: feature:188787-188840:-1:exon
so has part: feature:188488-188533:-1:exon
so has part: feature:188262-188335:-1:exon
so has part: feature:187599-187657:-1:exon
so has part: feature:182929-183009:-1:exon
so has part: feature:182531-182695:-1:exon
so has part: feature:181006-181096:-1:exon
so has part: feature:180117-180307:-1:exon
so has part: feature:172456-172571:-1:exon
so has part: feature:172285-172372:-1:exon
so has part: feature:171445-171561:-1:exon
so has part: feature:168380-168550:-1:exon
so has part: feature:166867-167022:-1:exon
so has part: feature:165703-165799:-1:exon
so has part: feature:164370-164554:-1:exon
so has part: feature:162455-162584:-1:exon
so has part: feature:161496-162075:-1:exon

XP_048474237.1
type: Protein
SIO_000068: ncbiprotein

position:196905:-1
position: 196905
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:196904-196905:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:188787-188840:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:188488-188533:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:188262-188335:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:187599-187657:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:182929-183009:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:182531-182695:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:181006-181096:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:180117-180307:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:172456-172571:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:172285-172372:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:171445-171561:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:168380-168550:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:166867-167022:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:165703-165799:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:164370-164554:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:162455-162584:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:161496-162075:-1:exon

shkbp1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: shkbp1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SH3KBP1-binding protein 1 isoform X2
translation: MILHPFYVWFSSSRQTLTWIPDSFFSSLLSGRISTLKDETGAIFIDRDPTVFTSILNFLRTKELDARDVNIATLRHEAEFYGIAPLVRRLELCEDLERSSCGNVLFHGYLPPPVIPTMRQNRHSLAGPQFVGSRQEAADRVPVRRSNTMPPNLGNAGILGKLLEQRGNGLIANPGMVRIVRGHHNWIAVVYTQFVVCYRLKESSGWQQVFSSPRLDWVIERVALNAKVLGGSLGDNDKMVAVASCSEIILWAIHEGGTGNEIGTFSLGVPVEALFFVGNQLIATSHTGKVGVWNAVTKHWQIQDVVPINSYDTAGSLLILGCNNGSIYYIDVQKFPLRMKDNDLLVTELYCDPYEDAITALSVYLTPKTSDSGNWIEIAYGTSSGMVRVIVQHPETVGSGPQLFQTFSVHRSPITKIKLSEKNLISVCADSNHVRTWTVTRFRGMISTQPGSTPLASFKVLSLEDLDGHGGCSVGLEIGPFGERDDEQVFIQKVVPDTNQLFVRLSSTGKRICEISSVDGTAITAFTVHECEGSSRISSRARRYLFTGHTDGSIQMWDLTTAMETSGKTPQRDSGGPTEQELLRHLEQCDIALSRTPDMSPAESLAHPSMLRASSSQFQTVDGFRERLVRSGTESIRRDSPMVLRQQERFSSVCSLQSYVASRTSLDKGDVSSGSPRQVRLHSSCIRAESPSGENATAEGDGRTGHRGSFVERCQELVRCTELHGSMDLRRFSHESDRLLNRNRTLGQSGSVQGLKAVSPSPTQSIRTVPPNVPSIPSVEPGLSVTSPLSPTMESATANRPRMNETSF
SIO_010081: shkbp1
subclass of: SO_0000673
so part of: shkbp1
location: complement(join(161496..162075,162455..162584,164370..164554,165703..165799,166867..167022,168380..168550,171445..171561,172285..172372,172456..172571,180117..180307,181006..181096,182531..182695,182929..183009,187599..187657,188262..188335,188488..188533,188787..188840,188989..189014))
location: region:161496-189014:-1
so has part: feature:188989-189014:-1:exon
so has part: feature:188787-188840:-1:exon
so has part: feature:188488-188533:-1:exon
so has part: feature:188262-188335:-1:exon
so has part: feature:187599-187657:-1:exon
so has part: feature:182929-183009:-1:exon
so has part: feature:182531-182695:-1:exon
so has part: feature:181006-181096:-1:exon
so has part: feature:180117-180307:-1:exon
so has part: feature:172456-172571:-1:exon
so has part: feature:172285-172372:-1:exon
so has part: feature:171445-171561:-1:exon
so has part: feature:168380-168550:-1:exon
so has part: feature:166867-167022:-1:exon
so has part: feature:165703-165799:-1:exon
so has part: feature:164370-164554:-1:exon
so has part: feature:162455-162584:-1:exon
so has part: feature:161496-162075:-1:exon

XP_048474236.1
type: Protein
SIO_000068: ncbiprotein

position:189014:-1
position: 189014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:188989-189014:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:188787-188840:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:188488-188533:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:188262-188335:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:187599-187657:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:182929-183009:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:182531-182695:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:181006-181096:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:180117-180307:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:172456-172571:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:172285-172372:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:171445-171561:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:168380-168550:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:166867-167022:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:165703-165799:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:164370-164554:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:162455-162584:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:161496-162075:-1:exon

ercc2
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: ercc2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(238694..270168)
location: region:238694-270168:-1
so has part: feature:238694-270168:-1:exon
subclass of: SO_0000010

109926203
type: Gene
SIO_000068: ncbigene

position:238694:-1
position: 238694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:270168:-1
position: 270168
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:238694-270168:-1:exon

ercc2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: ercc2
product: excision repair cross-complementation group 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 long SRA reads, 20 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XM_048618190.1
SIO_010081: ercc2
subclass of: SO_0000673
so part of: ercc2
location: complement(join(238694..238846,240740..240810,243449..243521,244879..244971,246358..246479,249180..249243,250146..250247,251308..251377,253165..253234,255812..255930,256996..257164,257582..257715,258782..258878,259353..259476,260578..260694,262304..262420,263475..263588,264796..264858,267097..267174,268298..268397,270092..270168))
location: region:238694-270168:-1
so has part: feature:270092-270168:-1:exon
so has part: feature:268298-268397:-1:exon
so has part: feature:267097-267174:-1:exon
so has part: feature:264796-264858:-1:exon
so has part: feature:263475-263588:-1:exon
so has part: feature:262304-262420:-1:exon
so has part: feature:260578-260694:-1:exon
so has part: feature:259353-259476:-1:exon
so has part: feature:258782-258878:-1:exon
so has part: feature:257582-257715:-1:exon
so has part: feature:256996-257164:-1:exon
so has part: feature:255812-255930:-1:exon
so has part: feature:253165-253234:-1:exon
so has part: feature:251308-251377:-1:exon
so has part: feature:250146-250247:-1:exon
so has part: feature:249180-249243:-1:exon
so has part: feature:246358-246479:-1:exon
so has part: feature:244879-244971:-1:exon
so has part: feature:243449-243521:-1:exon
so has part: feature:240740-240810:-1:exon
so has part: feature:238694-238846:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:270092-270168:-1:exon

position:270092:-1
position: 270092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:268298-268397:-1:exon

position:268298:-1
position: 268298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:268397:-1
position: 268397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:267097-267174:-1:exon

position:267097:-1
position: 267097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:267174:-1
position: 267174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:264796-264858:-1:exon

position:264796:-1
position: 264796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:264858:-1
position: 264858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:263475-263588:-1:exon

position:263475:-1
position: 263475
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:263588:-1
position: 263588
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:262304-262420:-1:exon

position:262304:-1
position: 262304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:262420:-1
position: 262420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:260578-260694:-1:exon

position:260578:-1
position: 260578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:260694:-1
position: 260694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:259353-259476:-1:exon

position:259353:-1
position: 259353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:259476:-1
position: 259476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:258782-258878:-1:exon

position:258782:-1
position: 258782
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:258878:-1
position: 258878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:257582-257715:-1:exon

position:257582:-1
position: 257582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:257715:-1
position: 257715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:256996-257164:-1:exon

position:256996:-1
position: 256996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:257164:-1
position: 257164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:255812-255930:-1:exon

position:255812:-1
position: 255812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:255930:-1
position: 255930
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:253165-253234:-1:exon

position:253165:-1
position: 253165
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:253234:-1
position: 253234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:251308-251377:-1:exon

position:251308:-1
position: 251308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:251377:-1
position: 251377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:250146-250247:-1:exon

position:250146:-1
position: 250146
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:250247:-1
position: 250247
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:249180-249243:-1:exon

position:249180:-1
position: 249180
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:249243:-1
position: 249243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:246358-246479:-1:exon

position:246358:-1
position: 246358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:246479:-1
position: 246479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:244879-244971:-1:exon

position:244879:-1
position: 244879
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:244971:-1
position: 244971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:243449-243521:-1:exon

position:243449:-1
position: 243449
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:243521:-1
position: 243521
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:240740-240810:-1:exon

position:240740:-1
position: 240740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:240810:-1
position: 240810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:238694-238846:-1:exon

position:238846:-1
position: 238846
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ercc2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: ercc2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: general transcription and DNA repair factor IIH helicase subunit XPD
translation: MRLNIDGLLVHFPYDFIYPEQYSYMLELKRILDAKGHGVLEMPSGTGKTVSLLSLIVAYQMMYPTEVTKLIYCSRTVPEIEKVIEELRKLLNYYEKQSGEKIQFLALALSSRKNLCIHPEVSSQRFGKEVDGKCRSLTASHIRMQHSSNPAVPICQFYEEFDLHGKQVPLTSGIYNLDDLKVYGKQKGWCPYFLARYSILHANIIVYSYHYLLDPKIADLVSKELSRKSVVVFDEAHNIDNVCIDSMSVNITRRMLDQCQNNIETIQKTIQHIKETDAAKLKEEYRQLVEGLKEAHIARETDVYLANPVLPDEILQESVPGNIRTAEHFVGFMKRFVEYLKSRLRVHHVVAENPPSFLKDVFDKVCIERKPLRFCSERLRSLLQTLEIADLSNFSPIILVSNFATLVSTYAKGFTIIMEPFDDKTPTIINPVLHFSCMDPSIAIKPVFERFQSVIITSGTLSPLDMYPKILDFRPVIMATFTMTLSRTCLCPLIVGRGNDQVTISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVSFFTSYHYMENIVASWYEQGILENIQRNKLIFIETQDAAETSVALEKYQEACENGRGAILLSVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYTRDQFQIRENDFLTFDAMRHAAQCVGRVIRGKTDYGLMIFADKVI
SIO_010081: ercc2
subclass of: SO_0000673
so part of: ercc2
location: complement(join(238694..238846,240740..240810,243449..243521,244879..244971,246358..246479,249180..249243,250146..250247,251308..251377,253165..253234,255812..255930,256996..257164,257582..257715,258782..258878,259353..259476,260578..260694,262304..262420,263475..263588,264796..264858,267097..267174,268298..268397,270092..270096))
location: region:238694-270096:-1
so has part: feature:270092-270096:-1:exon
so has part: feature:268298-268397:-1:exon
so has part: feature:267097-267174:-1:exon
so has part: feature:264796-264858:-1:exon
so has part: feature:263475-263588:-1:exon
so has part: feature:262304-262420:-1:exon
so has part: feature:260578-260694:-1:exon
so has part: feature:259353-259476:-1:exon
so has part: feature:258782-258878:-1:exon
so has part: feature:257582-257715:-1:exon
so has part: feature:256996-257164:-1:exon
so has part: feature:255812-255930:-1:exon
so has part: feature:253165-253234:-1:exon
so has part: feature:251308-251377:-1:exon
so has part: feature:250146-250247:-1:exon
so has part: feature:249180-249243:-1:exon
so has part: feature:246358-246479:-1:exon
so has part: feature:244879-244971:-1:exon
so has part: feature:243449-243521:-1:exon
so has part: feature:240740-240810:-1:exon
so has part: feature:238694-238846:-1:exon

XP_048474147.1
type: Protein
SIO_000068: ncbiprotein

position:270096:-1
position: 270096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:270092-270096:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:268298-268397:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:267097-267174:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:264796-264858:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:263475-263588:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:262304-262420:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:260578-260694:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:259353-259476:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:258782-258878:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:257582-257715:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:256996-257164:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:255812-255930:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:253165-253234:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:251308-251377:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:250146-250247:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:249180-249243:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:246358-246479:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:244879-244971:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:243449-243521:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:240740-240810:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:238694-238846:-1:exon

LOC109926522
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC109926522
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 284226..292345
location: region:284226-292345:1
so has part: feature:284226-292345:1:exon
subclass of: SO_0000010

109926522
type: Gene
SIO_000068: ncbigene

position:284226:1
position: 284226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:292345:1
position: 292345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:284226-292345:1:exon

LOC109926522
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109926522
product: trafficking protein particle complex subunit 6b-like
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618188.1
SIO_010081: LOC109926522
subclass of: SO_0000673
so part of: LOC109926522
location: join(284226..284478,285751..285818,287786..287903,288368..288451,289417..289510,291206..292345)
location: region:284226-292345:1
so has part: feature:284226-284478:1:exon
so has part: feature:285751-285818:1:exon
so has part: feature:287786-287903:1:exon
so has part: feature:288368-288451:1:exon
so has part: feature:289417-289510:1:exon
so has part: feature:291206-292345:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:284226-284478:1:exon

position:284478:1
position: 284478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:285751-285818:1:exon

position:285751:1
position: 285751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:285818:1
position: 285818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:287786-287903:1:exon

position:287786:1
position: 287786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:287903:1
position: 287903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:288368-288451:1:exon

position:288368:1
position: 288368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:288451:1
position: 288451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:289417-289510:1:exon

position:289417:1
position: 289417
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:289510:1
position: 289510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:291206-292345:1:exon

position:291206:1
position: 291206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109926522
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109926522
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: trafficking protein particle complex subunit 6b-like
translation: MGDAVLFELLHLEMVAQVYKEAESGDTEHGKSISTLEGMGFRAGQGLIERFTKETPSFKDELDIMKFICKEFWTNLFRKQIDNLRTNHQGTYVLQDNRFRLLTPVSNGKQYLEEAPKFLAFTCGLVRGALSNLGIDSTVTAEVSVMPACKFHIIMQKS
SIO_010081: LOC109926522
subclass of: SO_0000673
so part of: LOC109926522
location: join(284398..284478,285751..285818,287786..287903,288368..288451,289417..289510,291206..291237)
location: region:284398-291237:1
so has part: feature:284398-284478:1:exon
so has part: feature:285751-285818:1:exon
so has part: feature:287786-287903:1:exon
so has part: feature:288368-288451:1:exon
so has part: feature:289417-289510:1:exon
so has part: feature:291206-291237:1:exon

XP_048474145.1
type: Protein
SIO_000068: ncbiprotein

position:284398:1
position: 284398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:291237:1
position: 291237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:284398-284478:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:285751-285818:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:287786-287903:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:288368-288451:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:289417-289510:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:291206-291237:1:exon

LOC125480970
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC125480970
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 783616..1046067
location: region:783616-1046067:1
so has part: feature:783616-1046067:1:exon
subclass of: SO_0000010

125480970
type: Gene
SIO_000068: ncbigene

position:783616:1
position: 783616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1046067:1
position: 1046067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:783616-1046067:1:exon

LOC125480970
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC125480970
product: leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 48 Proteins, and 42% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_048618360.1
SIO_010081: LOC125480970
subclass of: SO_0000673
so part of: LOC125480970
location: join(783616..785000,1044981..1046067)
location: region:783616-1046067:1
so has part: feature:783616-785000:1:exon
so has part: feature:1044981-1046067:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:783616-785000:1:exon

position:785000:1
position: 785000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1044981-1046067:1:exon

position:1044981:1
position: 1044981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125480970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC125480970
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein
translation: MERLLFSLLLLSLTVKAQLCPKRCICQNLSPSLSILCAKTGLLFVPPFIDRRTVELRLTDNFITTVKRKDFANMTSLVHLTLSRNTISQIMPFTFGDLRGLRALHLDSNRLTRVNHEHFNGLVNLRHLILSNNQLHYIAANSFDDFILSLEDLDLSYNNLENLPWETIGKMTNVNSLSLDHNLIDFVPEGTFSNLHKLARLDMTSNKLHKLPPDPLFLRVQMFAKTKGSPLSSLVLSFGGNPLHCNCELLWLRRLTREDDLETCASPPHLMGKYFWFIPEEEFTCDSPLITRHTSKTFVMEGQQATLKCKAVGDPDPFIHWISPDERLISNSSRAITRENGTLHILIATPKDSGTFTCIASNAGGEAMAQVELIVNPLPHFANSTNNIKEPDPGSSDITTSAKSGSPPVANDTKTTQEKKVIATDLTSSSVQIRWPSQRNIPGIRMYQVQYNSSSDDVLVYRMIPSSSKTFIVKDLVAGRDYDLCVLAVYDDGITTLTATRAVGCVQFTTEKEYTQCQSMHTQFLGGTMIIIIGGIIVASVLVFIIILMIRYKVYNNTGEHKTKVSNVYSQTNGSQNGAMPPSTSKRMESREEHVQEMLPDAPKGTLAVALTTDYDKVSVTQSPSFPTEDITPHKRRRTRTELLKDAPFPSKEIQGEDQGSTSTKLQIPNFFEDYV
SIO_010081: LOC125480970
subclass of: SO_0000673
so part of: LOC125480970
location: join(783616..785000,1044981..1045626)
location: region:783616-1045626:1
so has part: feature:783616-785000:1:exon
so has part: feature:1044981-1045626:1:exon

XP_048474317.1
type: Protein
SIO_000068: ncbiprotein

position:1045626:1
position: 1045626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:783616-785000:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1044981-1045626:1:exon

LOC109928391
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC109928391
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 834654..850356
location: region:834654-850356:1
so has part: feature:834654-850356:1:exon
subclass of: SO_0000011

109928391
type: Gene
SIO_000068: ncbigene

position:834654:1
position: 834654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:850356:1
position: 850356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:834654-850356:1:exon

LOC109928391
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 259920
nc RNA class: lncRNA
gene: LOC109928391
product: uncharacterized LOC109928391
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_002260455.2
SIO_010081: LOC109928391
subclass of: SO_0000673
so part of: LOC109928391
location: join(834654..834855,842018..842365,850023..850356)
location: region:834654-850356:1
so has part: feature:834654-834855:1:exon
so has part: feature:842018-842365:1:exon
so has part: feature:850023-850356:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:834654-834855:1:exon

position:834855:1
position: 834855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:842018-842365:1:exon

position:842018:1
position: 842018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:842365:1
position: 842365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:850023-850356:1:exon

position:850023:1
position: 850023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109935050
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC109935050
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1282100..1283734)
location: region:1282100-1283734:-1
so has part: feature:1282100-1283734:-1:exon
subclass of: SO_0000010

109935050
type: Gene
SIO_000068: ncbigene

position:1282100:-1
position: 1282100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1283734:-1
position: 1283734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1282100-1283734:-1:exon

LOC109935050
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109935050
product: leucine-rich repeat and fibronectin type-III domain-containing protein 5-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 81% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_048618191.1
SIO_010081: LOC109935050
subclass of: SO_0000673
so part of: LOC109935050
location: complement(join(1282100..1282975,1283347..1283734))
location: region:1282100-1283734:-1
so has part: feature:1283347-1283734:-1:exon
so has part: feature:1282100-1282975:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1283347-1283734:-1:exon

position:1283347:-1
position: 1283347
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1282100-1282975:-1:exon

position:1282975:-1
position: 1282975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC109935050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109935050
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: leucine-rich repeat and fibronectin type-III domain-containing protein 5-like
translation: MIPSTSKTFLVNDLAPGRDYDLCILAVYDDGITSMTGTRVVGCVQFTTEQEYTQCHSVHTQFLGGTMIIIIGGIIVASVLVFIIILMIRYKVYNNTGEHKTVVSNMCSQTNGGQNGGMTRSSSKLTEGSEPQLPKEGTD
SIO_010081: LOC109935050
subclass of: SO_0000673
so part of: LOC109935050
location: complement(join(1282944..1282975,1283347..1283734))
location: region:1282944-1283734:-1
so has part: feature:1283347-1283734:-1:exon
so has part: feature:1282944-1282975:-1:exon

XP_048474148.1
type: Protein
SIO_000068: ncbiprotein

position:1282944:-1
position: 1282944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1283347-1283734:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1282944-1282975:-1:exon

LOC125487305
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC125487305
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1305572..1320808)
location: region:1305572-1320808:-1
so has part: feature:1305572-1320808:-1:exon
subclass of: SO_0000010

125487305
type: Gene
SIO_000068: ncbigene

position:1305572:-1
position: 1305572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1320808:-1
position: 1320808
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1305572-1320808:-1:exon

LOC125487305
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC125487305
product: leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_048618341.1
SIO_010081: LOC125487305
subclass of: SO_0000673
so part of: LOC125487305
location: complement(join(1305572..1306983,1320770..1320808))
location: region:1305572-1320808:-1
so has part: feature:1320770-1320808:-1:exon
so has part: feature:1305572-1306983:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1320770-1320808:-1:exon

position:1320770:-1
position: 1320770
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1305572-1306983:-1:exon

position:1306983:-1
position: 1306983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125487305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC125487305
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein
translation: MERLLFSLLLLSLTVKAQLCPKRCICQNLSPSLSILCAKTGLLFVPPFIDRRTVELRLTDNFITMVKRKDFANMTSLVHLTLSRNTISQIMPLTFSDLRGLRALHLDSNRLTKLVNDHLKGLVNLRHLILNNNQLSYISEGSFNDFITCLEDLDMSYNNLEQFPWIAIAKMVNLNTLTLDHNLIDHIEEGTFSVLHKLARLDMTSNRLQKLPPDPLFLRTQLLVNAKGTQYFSLVLNFGGNPLHCNCELLWLRRLTRKDDLETCASPSHLMGKYFWSISEDDFTCESPLITRLYSTKTFVMEGQGVTLKCKAIGDPDPSILWSSPEGKLVSNTSRMTIYDNGTLDILITTLKDSGMFTCIASNAAGESTTNITIGIIPLPHLVNFTNQVKEPAPGSSDITTSTKSGSPSNGTDTKSLQDKKVVATELSTTSALIRWPSQRPIPGIRMYQIQYNSSTDDTLVYR
SIO_010081: LOC125487305
subclass of: SO_0000673
so part of: LOC125487305
location: complement(1305572..1306963)
location: region:1305572-1306963:-1
so has part: feature:1305572-1306963:-1:exon

XP_048474298.1
type: Protein
SIO_000068: ncbiprotein

position:1306963:-1
position: 1306963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1305572-1306963:-1:exon

LOC109929729
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC109929729
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1988603..2004438)
location: region:1988603-2004438:-1
so has part: feature:1988603-2004438:-1:exon
subclass of: SO_0000010

109929729
type: Gene
SIO_000068: ncbigene

position:1988603:-1
position: 1988603
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2004438:-1
position: 2004438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1988603-2004438:-1:exon

LOC109929729
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109929729
product: glia maturation factor gamma
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_020529298.2
SIO_010081: LOC109929729
subclass of: SO_0000673
so part of: LOC109929729
location: complement(join(1988603..1988758,1992577..1992650,1994811..1994893,1996884..1996933,1998519..1998568,1999829..1999925,2004103..2004438))
location: region:1988603-2004438:-1
so has part: feature:2004103-2004438:-1:exon
so has part: feature:1999829-1999925:-1:exon
so has part: feature:1998519-1998568:-1:exon
so has part: feature:1996884-1996933:-1:exon
so has part: feature:1994811-1994893:-1:exon
so has part: feature:1992577-1992650:-1:exon
so has part: feature:1988603-1988758:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2004103-2004438:-1:exon

position:2004103:-1
position: 2004103
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1999829-1999925:-1:exon

position:1999829:-1
position: 1999829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1999925:-1
position: 1999925
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1998519-1998568:-1:exon

position:1998519:-1
position: 1998519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1998568:-1
position: 1998568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1996884-1996933:-1:exon

position:1996884:-1
position: 1996884
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1996933:-1
position: 1996933
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1994811-1994893:-1:exon

position:1994811:-1
position: 1994811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1994893:-1
position: 1994893
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1992577-1992650:-1:exon

position:1992577:-1
position: 1992577
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1992650:-1
position: 1992650
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1988603-1988758:-1:exon

position:1988758:-1
position: 1988758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC109929729
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109929729
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: glia maturation factor gamma
translation: MSDSLVVCEVDPKLLEKLKKFRFRKETTNAAIIIKVDRENQQMVLEEEHEGISPDELRNELPERQPRFIVYSYKYVHHDKRVSYPMCLIFSSPQGCNPQQQMMYAGSKNRLVQLGELTKVFEIRNIDELTEDWLCEKLAFFR
SIO_010081: LOC109929729
subclass of: SO_0000673
so part of: LOC109929729
location: complement(join(1988687..1988758,1992577..1992650,1994811..1994893,1996884..1996933,1998519..1998568,1999829..1999925,2004103..2004105))
location: region:1988687-2004105:-1
so has part: feature:2004103-2004105:-1:exon
so has part: feature:1999829-1999925:-1:exon
so has part: feature:1998519-1998568:-1:exon
so has part: feature:1996884-1996933:-1:exon
so has part: feature:1994811-1994893:-1:exon
so has part: feature:1992577-1992650:-1:exon
so has part: feature:1988687-1988758:-1:exon

XP_020384887.1
type: Protein
SIO_000068: ncbiprotein

position:1988687:-1
position: 1988687
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2004105:-1
position: 2004105
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2004103-2004105:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1999829-1999925:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1998519-1998568:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1996884-1996933:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1994811-1994893:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1992577-1992650:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1988687-1988758:-1:exon

LOC109929717
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC109929717
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2049351..2085056
location: region:2049351-2085056:1
so has part: feature:2049351-2085056:1:exon
subclass of: SO_0000010

109929717
type: Gene
SIO_000068: ncbigene

position:2049351:1
position: 2049351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2085056:1
position: 2085056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2049351-2085056:1:exon

LOC109929717
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109929717
product: protein Smaug homolog 1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618192.1
SIO_010081: LOC109929717
subclass of: SO_0000673
so part of: LOC109929717
location: join(2049351..2049384,2050593..2050859,2060057..2060166,2061016..2061102,2062990..2063299,2065330..2065415,2066959..2067074,2070551..2070752,2073313..2073439,2074749..2074832,2077487..2085056)
location: region:2049351-2085056:1
so has part: feature:2049351-2049384:1:exon
so has part: feature:2050593-2050859:1:exon
so has part: feature:2060057-2060166:1:exon
so has part: feature:2061016-2061102:1:exon
so has part: feature:2062990-2063299:1:exon
so has part: feature:2065330-2065415:1:exon
so has part: feature:2066959-2067074:1:exon
so has part: feature:2070551-2070752:1:exon
so has part: feature:2073313-2073439:1:exon
so has part: feature:2074749-2074832:1:exon
so has part: feature:2077487-2085056:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2049351-2049384:1:exon

position:2049384:1
position: 2049384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2050593-2050859:1:exon

position:2050593:1
position: 2050593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2050859:1
position: 2050859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2060057-2060166:1:exon

position:2060057:1
position: 2060057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2060166:1
position: 2060166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2061016-2061102:1:exon

position:2061016:1
position: 2061016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2061102:1
position: 2061102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2062990-2063299:1:exon

position:2062990:1
position: 2062990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2063299:1
position: 2063299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2065330-2065415:1:exon

position:2065330:1
position: 2065330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2065415:1
position: 2065415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2066959-2067074:1:exon

position:2066959:1
position: 2066959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2067074:1
position: 2067074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2070551-2070752:1:exon

position:2070551:1
position: 2070551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2070752:1
position: 2070752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2073313-2073439:1:exon

position:2073313:1
position: 2073313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2073439:1
position: 2073439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2074749-2074832:1:exon

position:2074749:1
position: 2074749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2074832:1
position: 2074832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2077487-2085056:1:exon

position:2077487:1
position: 2077487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109929717
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109929717
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein Smaug homolog 1
translation: MAHTHYFEGPFVLQGQTQTNHSPLKRSVSLTPPINMTNQSAVSEWMSPEDLRTRAVYAPSDHAPLSPQSSIASSGSGGSEQTEEQGSSRNTFQEEGSGMKDVPTWLKSLRLHKYASLFSQLTYEEMMTLTEHQLESQNVTKGARHKIALSIQKLHERQGVLKSLEKDILEGGNLRNALQELQQIIITPIKAYTTPQMTPKDGHETGTNSSSNTIPGLGTDSRTTKTAAEKDSTSDGFQSQSVSTCDGESAAAPVSEGDIPGQFTRVMGKVCTQLLVSRPDEENISSYLQLLEKCLAHEAFTETQKKRLFSWKQQVFKLLRSFPRKALLEMPGVRQRSWGFSQSSSLPTAGSVVGGLGRRGQRPFQVPPRGLSANRMGLIGTSAASLGGVSPRHTLNPLTSQGRQNLWFANPGGSNSMPSQSRSSVQRTYSLPVHTSPQAILMFQQPECQVPVTEPEINTRLESLCLSMTEHALGDGVDKTSTI
SIO_010081: LOC109929717
subclass of: SO_0000673
so part of: LOC109929717
location: join(2049351..2049384,2050593..2050859,2060057..2060166,2061016..2061102,2062990..2063299,2065330..2065415,2066959..2067074,2070551..2070752,2073313..2073439,2074749..2074832,2077487..2077515)
location: region:2049351-2077515:1
so has part: feature:2049351-2049384:1:exon
so has part: feature:2050593-2050859:1:exon
so has part: feature:2060057-2060166:1:exon
so has part: feature:2061016-2061102:1:exon
so has part: feature:2062990-2063299:1:exon
so has part: feature:2065330-2065415:1:exon
so has part: feature:2066959-2067074:1:exon
so has part: feature:2070551-2070752:1:exon
so has part: feature:2073313-2073439:1:exon
so has part: feature:2074749-2074832:1:exon
so has part: feature:2077487-2077515:1:exon

XP_048474149.1
type: Protein
SIO_000068: ncbiprotein

position:2077515:1
position: 2077515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2049351-2049384:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2050593-2050859:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2060057-2060166:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2061016-2061102:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2062990-2063299:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2065330-2065415:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2066959-2067074:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2070551-2070752:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2073313-2073439:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2074749-2074832:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2077487-2077515:1:exon

erh
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: erh
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2080011..2138862
location: region:2080011-2138862:1
so has part: feature:2080011-2138862:1:exon
subclass of: SO_0000010

109924602
type: Gene
SIO_000068: ncbigene

position:2080011:1
position: 2080011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2138862:1
position: 2138862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2080011-2138862:1:exon

erh
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: erh
product: ERH mRNA splicing and mitosis factor
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618193.1
SIO_010081: erh
subclass of: SO_0000673
so part of: erh
location: join(2080011..2080142,2134461..2134548,2135796..2135916,2138144..2138862)
location: region:2080011-2138862:1
so has part: feature:2080011-2080142:1:exon
so has part: feature:2134461-2134548:1:exon
so has part: feature:2135796-2135916:1:exon
so has part: feature:2138144-2138862:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2080011-2080142:1:exon

position:2080142:1
position: 2080142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2134461-2134548:1:exon

position:2134461:1
position: 2134461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2134548:1
position: 2134548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2135796-2135916:1:exon

position:2135796:1
position: 2135796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2135916:1
position: 2135916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2138144-2138862:1:exon

position:2138144:1
position: 2138144
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

erh
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: erh
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: enhancer of rudimentary homolog
translation: MHNTGMTLNDFGYHNGPVALIDRHVLHLPQGCSSCRRLEEASTGSHTILLVQPTKRPEGRTYADYESVNECMEGVCKMFEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWLKEKIYILLRRQAQQAGK
SIO_010081: erh
subclass of: SO_0000673
so part of: erh
location: join(2080011..2080142,2134461..2134548,2135796..2135916,2138144..2138246)
location: region:2080011-2138246:1
so has part: feature:2080011-2080142:1:exon
so has part: feature:2134461-2134548:1:exon
so has part: feature:2135796-2135916:1:exon
so has part: feature:2138144-2138246:1:exon

XP_048474150.1
type: Protein
SIO_000068: ncbiprotein

position:2138246:1
position: 2138246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2080011-2080142:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2134461-2134548:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2135796-2135916:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2138144-2138246:1:exon

LOC125487274
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC125487274
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2140427..2193978)
location: region:2140427-2193978:-1
so has part: feature:2140427-2193978:-1:exon
subclass of: SO_0000010

125487274
type: Gene
SIO_000068: ncbigene

position:2140427:-1
position: 2140427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2193978:-1
position: 2193978
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2140427-2193978:-1:exon

LOC125487274
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC125487274
product: zinc finger protein 541-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 long SRA reads, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_048618124.1
SIO_010081: LOC125487274
subclass of: SO_0000673
so part of: LOC125487274
location: complement(join(2140427..2143175,2146253..2146437,2147723..2147875,2149712..2149800,2152417..2152492,2155453..2155556,2156743..2156885,2161371..2161434,2163302..2163647,2164091..2164360,2165800..2165974,2166611..2166675,2168509..2170405,2172301..2172428,2172723..2172847,2174765..2175092,2193755..2193978))
location: region:2140427-2193978:-1
so has part: feature:2193755-2193978:-1:exon
so has part: feature:2174765-2175092:-1:exon
so has part: feature:2172723-2172847:-1:exon
so has part: feature:2172301-2172428:-1:exon
so has part: feature:2168509-2170405:-1:exon
so has part: feature:2166611-2166675:-1:exon
so has part: feature:2165800-2165974:-1:exon
so has part: feature:2164091-2164360:-1:exon
so has part: feature:2163302-2163647:-1:exon
so has part: feature:2161371-2161434:-1:exon
so has part: feature:2156743-2156885:-1:exon
so has part: feature:2155453-2155556:-1:exon
so has part: feature:2152417-2152492:-1:exon
so has part: feature:2149712-2149800:-1:exon
so has part: feature:2147723-2147875:-1:exon
so has part: feature:2146253-2146437:-1:exon
so has part: feature:2140427-2143175:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2193755-2193978:-1:exon

position:2193755:-1
position: 2193755
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2174765-2175092:-1:exon

position:2174765:-1
position: 2174765
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2175092:-1
position: 2175092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2172723-2172847:-1:exon

position:2172723:-1
position: 2172723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2172847:-1
position: 2172847
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2172301-2172428:-1:exon

position:2172301:-1
position: 2172301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2172428:-1
position: 2172428
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2168509-2170405:-1:exon

position:2168509:-1
position: 2168509
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2170405:-1
position: 2170405
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2166611-2166675:-1:exon

position:2166611:-1
position: 2166611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2166675:-1
position: 2166675
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2165800-2165974:-1:exon

position:2165800:-1
position: 2165800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2165974:-1
position: 2165974
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2164091-2164360:-1:exon

position:2164091:-1
position: 2164091
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2164360:-1
position: 2164360
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2163302-2163647:-1:exon

position:2163302:-1
position: 2163302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2163647:-1
position: 2163647
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2161371-2161434:-1:exon

position:2161371:-1
position: 2161371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2161434:-1
position: 2161434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2156743-2156885:-1:exon

position:2156743:-1
position: 2156743
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2156885:-1
position: 2156885
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2155453-2155556:-1:exon

position:2155453:-1
position: 2155453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2155556:-1
position: 2155556
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:2152417-2152492:-1:exon

position:2152417:-1
position: 2152417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2152492:-1
position: 2152492
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:2149712-2149800:-1:exon

position:2149712:-1
position: 2149712
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2149800:-1
position: 2149800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:2147723-2147875:-1:exon

position:2147723:-1
position: 2147723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2147875:-1
position: 2147875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:2146253-2146437:-1:exon

position:2146253:-1
position: 2146253
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2146437:-1
position: 2146437
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:2140427-2143175:-1:exon

position:2143175:-1
position: 2143175
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125487274
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC125487274
product: zinc finger protein 541-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 long SRA reads, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_048618125.1
SIO_010081: LOC125487274
subclass of: SO_0000673
so part of: LOC125487274
location: complement(join(2140427..2143175,2146253..2146437,2147723..2147875,2149712..2149800,2152417..2152492,2155453..2155556,2156743..2156885,2161371..2161434,2163302..2163647,2164091..2164360,2165800..2165974,2166611..2166675,2168509..2170405,2172301..2172428,2172723..2172847,2175002..2175181,2177740..2178619,2178729..2178857,2193755..2193978))
location: region:2140427-2193978:-1
so has part: feature:2193755-2193978:-1:exon
so has part: feature:2178729-2178857:-1:exon
so has part: feature:2177740-2178619:-1:exon
so has part: feature:2175002-2175181:-1:exon
so has part: feature:2172723-2172847:-1:exon
so has part: feature:2172301-2172428:-1:exon
so has part: feature:2168509-2170405:-1:exon
so has part: feature:2166611-2166675:-1:exon
so has part: feature:2165800-2165974:-1:exon
so has part: feature:2164091-2164360:-1:exon
so has part: feature:2163302-2163647:-1:exon
so has part: feature:2161371-2161434:-1:exon
so has part: feature:2156743-2156885:-1:exon
so has part: feature:2155453-2155556:-1:exon
so has part: feature:2152417-2152492:-1:exon
so has part: feature:2149712-2149800:-1:exon
so has part: feature:2147723-2147875:-1:exon
so has part: feature:2146253-2146437:-1:exon
so has part: feature:2140427-2143175:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2193755-2193978:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2178729-2178857:-1:exon

position:2178729:-1
position: 2178729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2178857:-1
position: 2178857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2177740-2178619:-1:exon

position:2177740:-1
position: 2177740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2178619:-1
position: 2178619
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2175002-2175181:-1:exon

position:2175002:-1
position: 2175002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2175181:-1
position: 2175181
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2172723-2172847:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2172301-2172428:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2168509-2170405:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2166611-2166675:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2165800-2165974:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2164091-2164360:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2163302-2163647:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2161371-2161434:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2156743-2156885:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2155453-2155556:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2152417-2152492:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2149712-2149800:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2147723-2147875:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2146253-2146437:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2140427-2143175:-1:exon

LOC125487274
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC125487274
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 541-like isoform X2
translation: MDCYSFSDESSLQTEMHLPLLSDSISPLPQKNSPEKSGGKSEVKYGGLQKRRRLSARHSPQQAFQECSQCGKSFSSASALSKHYLTHSHERRHVCRICNKAFKRQDHLSGHLLTHQKNKPYVCMEHGCDKSYCDSRSLRRHYEVQHGLYCQREPFADNSSKEVDSTEGMLYSQSGQTQTLQCEVGMAQRPTTQVESLSQRSCLPNREMLRPLMSSVSQKVPCETGASGSKITLHYPTQSHATASVLTSPNICLSERSGAVRQAKFGIMQREHSSGLNCNITDPYNRVNPSHFSVADPSVSCVESLDSYVLDSVIPGRPSQPAQYTLESSRPASWPQDVSTNHTLSRNETGSSRQQSSQDLVWTNNLATYSGSKGSYSYIVPNSQPPEEVSATFSSGALHKLDSFAQAFTRQNLDIQSNSSVAKNQSENPALSEFDACGNVFRQLLSYKTNLNQWQAFPEQKRQILQEQYSLHQQHQQQIATSLFTQVYMGDQEASPMQNQDQFQNHMLQLISDTQYNLSQSQNSVSQSQVLVTQSQHVIAQKIPSQIQNNGTQSHHPSELVQDFQHSLRQEATSPFLQFQATKQCQLSKNILSCYPQETECTEQQTGTDLQPALRGISECHKKSKKSPFKGQHSLQSVCEEEVVQNQLQLQSEQLEGWSLPPCSNKRGRISNKDVCVKHYNIAGKSSKGVSVSRKERQKLDPNCTAPPSQVAMNSFSVQNSLTRNVEDCLQKASFHASVQDEDIYSLSSMPLEGDGSSSVLCRDLMSSSTSHNLDENEENFRCERCQGVFHFLKGLNCHTCPREGMGKQLSLEDGIKTQKVTDNGIEKMEHGGLFFQYLEDKLSALLLKKPLEENVAMPLVIPVSVPVKSAGSKKDGKPVKSENSPVTPRKSVTTRLTDLMVSSNDTSAQVTETGKQANVNCRGHSKKQRRKRSRPEPLFIPSPASNQTGVLPGMVLYQSHMRSPVCLADHLLEKNFQPPPYTPPPMLSPIRHGSGLYFNRICSLIGSKVPHNTYAPKGILGSVVDGVDGICGISVVKDDSIVTIEPHINIGTRFQAEIPLLQDKSLLDDSVHPADLVWKPWDDIEMNKITQARVTDLLNLACSSVLPGGGTNLELALHCLHDTRGDILAALDMLLMKGVRRDSCHPLGDYHYTGTEKWTTAEKKLFNKAICLYNKDFFLMQKMIKHKTVAQCVEYYYTWKKQLKFEWKRTHLLDEEKIKHEADSPSDGKEIKKLSFLASQSMSIPSQTSMNREKLKKKIVRSKPSPSPSVHCQTGAQDKNEKKFTVGNFPCKECTKVFDKVKSRNAHMKCHRQQEEQERQAEMKRSRIRLKAEPKQEPEETVLVFTSNNISNITTS
SIO_010081: LOC125487274
subclass of: SO_0000673
so part of: LOC125487274
location: complement(join(2142992..2143175,2146253..2146437,2147723..2147875,2149712..2149800,2152417..2152492,2155453..2155556,2156743..2156885,2161371..2161434,2163302..2163647,2164091..2164360,2165800..2165974,2166611..2166675,2168509..2170405,2172301..2172428,2172723..2172847,2175002..2175071))
location: region:2142992-2175071:-1
so has part: feature:2175002-2175071:-1:exon
so has part: feature:2172723-2172847:-1:exon
so has part: feature:2172301-2172428:-1:exon
so has part: feature:2168509-2170405:-1:exon
so has part: feature:2166611-2166675:-1:exon
so has part: feature:2165800-2165974:-1:exon
so has part: feature:2164091-2164360:-1:exon
so has part: feature:2163302-2163647:-1:exon
so has part: feature:2161371-2161434:-1:exon
so has part: feature:2156743-2156885:-1:exon
so has part: feature:2155453-2155556:-1:exon
so has part: feature:2152417-2152492:-1:exon
so has part: feature:2149712-2149800:-1:exon
so has part: feature:2147723-2147875:-1:exon
so has part: feature:2146253-2146437:-1:exon
so has part: feature:2142992-2143175:-1:exon

XP_048474082.1
type: Protein
SIO_000068: ncbiprotein

position:2142992:-1
position: 2142992
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2175071:-1
position: 2175071
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2175002-2175071:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2172723-2172847:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2172301-2172428:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2168509-2170405:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2166611-2166675:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2165800-2165974:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2164091-2164360:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2163302-2163647:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2161371-2161434:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2156743-2156885:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2155453-2155556:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2152417-2152492:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2149712-2149800:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2147723-2147875:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2146253-2146437:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2142992-2143175:-1:exon

LOC125487274
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC125487274
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 541-like isoform X1
translation: MDCYSFSDESSLQTEMHLPLLSDSELPIASNIQRQEFIPDPDDIIYAGMTSIDLDSNLETAEIPGDPFADNVDLSLCTVDKGCDSPKIPSDSTDTDSPPMLLGISPLPQKNSPEKSGGKSEVKYGGLQKRRRLSARHSPQQAFQECSQCGKSFSSASALSKHYLTHSHERRHVCRICNKAFKRQDHLSGHLLTHQKNKPYVCMEHGCDKSYCDSRSLRRHYEVQHGLYCQREPFADNSSKEVDSTEGMLYSQSGQTQTLQCEVGMAQRPTTQVESLSQRSCLPNREMLRPLMSSVSQKVPCETGASGSKITLHYPTQSHATASVLTSPNICLSERSGAVRQAKFGIMQREHSSGLNCNITDPYNRVNPSHFSVADPSVSCVESLDSYVLDSVIPGRPSQPAQYTLESSRPASWPQDVSTNHTLSRNETGSSRQQSSQDLVWTNNLATYSGSKGSYSYIVPNSQPPEEVSATFSSGALHKLDSFAQAFTRQNLDIQSNSSVAKNQSENPALSEFDACGNVFRQLLSYKTNLNQWQAFPEQKRQILQEQYSLHQQHQQQIATSLFTQVYMGDQEASPMQNQDQFQNHMLQLISDTQYNLSQSQNSVSQSQVLVTQSQHVIAQKIPSQIQNNGTQSHHPSELVQDFQHSLRQEATSPFLQFQATKQCQLSKNILSCYPQETECTEQQTGTDLQPALRGISECHKKSKKSPFKGQHSLQSVCEEEVVQNQLQLQSEQLEGWSLPPCSNKRGRISNKDVCVKHYNIAGKSSKGVSVSRKERQKLDPNCTAPPSQVAMNSFSVQNSLTRNVEDCLQKASFHASVQDEDIYSLSSMPLEGDGSSSVLCRDLMSSSTSHNLDENEENFRCERCQGVFHFLKGLNCHTCPREGMGKQLSLEDGIKTQKVTDNGIEKMEHGGLFFQYLEDKLSALLLKKPLEENVAMPLVIPVSVPVKSAGSKKDGKPVKSENSPVTPRKSVTTRLTDLMVSSNDTSAQVTETGKQANVNCRGHSKKQRRKRSRPEPLFIPSPASNQTGVLPGMVLYQSHMRSPVCLADHLLEKNFQPPPYTPPPMLSPIRHGSGLYFNRICSLIGSKVPHNTYAPKGILGSVVDGVDGICGISVVKDDSIVTIEPHINIGTRFQAEIPLLQDKSLLDDSVHPADLVWKPWDDIEMNKITQARVTDLLNLACSSVLPGGGTNLELALHCLHDTRGDILAALDMLLMKGVRRDSCHPLGDYHYTGTEKWTTAEKKLFNKAICLYNKDFFLMQKMIKHKTVAQCVEYYYTWKKQLKFEWKRTHLLDEEKIKHEADSPSDGKEIKKLSFLASQSMSIPSQTSMNREKLKKKIVRSKPSPSPSVHCQTGAQDKNEKKFTVGNFPCKECTKVFDKVKSRNAHMKCHRQQEEQERQAEMKRSRIRLKAEPKQEPEETVLVFTSNNISNITTS
SIO_010081: LOC125487274
subclass of: SO_0000673
so part of: LOC125487274
location: complement(join(2142992..2143175,2146253..2146437,2147723..2147875,2149712..2149800,2152417..2152492,2155453..2155556,2156743..2156885,2161371..2161434,2163302..2163647,2164091..2164360,2165800..2165974,2166611..2166675,2168509..2170405,2172301..2172428,2172723..2172847,2174765..2175071))
location: region:2142992-2175071:-1
so has part: feature:2174765-2175071:-1:exon
so has part: feature:2172723-2172847:-1:exon
so has part: feature:2172301-2172428:-1:exon
so has part: feature:2168509-2170405:-1:exon
so has part: feature:2166611-2166675:-1:exon
so has part: feature:2165800-2165974:-1:exon
so has part: feature:2164091-2164360:-1:exon
so has part: feature:2163302-2163647:-1:exon
so has part: feature:2161371-2161434:-1:exon
so has part: feature:2156743-2156885:-1:exon
so has part: feature:2155453-2155556:-1:exon
so has part: feature:2152417-2152492:-1:exon
so has part: feature:2149712-2149800:-1:exon
so has part: feature:2147723-2147875:-1:exon
so has part: feature:2146253-2146437:-1:exon
so has part: feature:2142992-2143175:-1:exon

XP_048474081.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2174765-2175071:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2172723-2172847:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2172301-2172428:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2168509-2170405:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2166611-2166675:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2165800-2165974:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2164091-2164360:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2163302-2163647:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2161371-2161434:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2156743-2156885:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2155453-2155556:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2152417-2152492:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2149712-2149800:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2147723-2147875:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2146253-2146437:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2142992-2143175:-1:exon

bicra
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: bicra
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2213504..2335937
location: region:2213504-2335937:1
so has part: feature:2213504-2335937:1:exon
subclass of: SO_0000010

109920191
type: Gene
SIO_000068: ncbigene

position:2213504:1
position: 2213504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2335937:1
position: 2335937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2213504-2335937:1:exon

bicra
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: bicra
product: BRD4 interacting chromatin remodeling complex associated protein, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618133.1
SIO_010081: bicra
subclass of: SO_0000673
so part of: bicra
location: join(2213504..2213846,2288975..2289116,2294162..2294207,2297305..2297347,2301817..2301882,2305768..2307798,2310709..2310954,2313491..2314294,2315404..2315647,2316369..2316511,2318563..2318691,2319867..2319928,2321686..2321834,2323501..2323595,2325014..2325116,2327697..2335937)
location: region:2213504-2335937:1
so has part: feature:2213504-2213846:1:exon
so has part: feature:2288975-2289116:1:exon
so has part: feature:2294162-2294207:1:exon
so has part: feature:2297305-2297347:1:exon
so has part: feature:2301817-2301882:1:exon
so has part: feature:2305768-2307798:1:exon
so has part: feature:2310709-2310954:1:exon
so has part: feature:2313491-2314294:1:exon
so has part: feature:2315404-2315647:1:exon
so has part: feature:2316369-2316511:1:exon
so has part: feature:2318563-2318691:1:exon
so has part: feature:2319867-2319928:1:exon
so has part: feature:2321686-2321834:1:exon
so has part: feature:2323501-2323595:1:exon
so has part: feature:2325014-2325116:1:exon
so has part: feature:2327697-2335937:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2213504-2213846:1:exon

position:2213846:1
position: 2213846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2288975-2289116:1:exon

position:2288975:1
position: 2288975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2289116:1
position: 2289116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2294162-2294207:1:exon

position:2294162:1
position: 2294162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2294207:1
position: 2294207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2297305-2297347:1:exon

position:2297305:1
position: 2297305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2297347:1
position: 2297347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2301817-2301882:1:exon

position:2301817:1
position: 2301817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2301882:1
position: 2301882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2305768-2307798:1:exon

position:2305768:1
position: 2305768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2307798:1
position: 2307798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2310709-2310954:1:exon

position:2310709:1
position: 2310709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2310954:1
position: 2310954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2313491-2314294:1:exon

position:2313491:1
position: 2313491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2314294:1
position: 2314294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2315404-2315647:1:exon

position:2315404:1
position: 2315404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2315647:1
position: 2315647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2316369-2316511:1:exon

position:2316369:1
position: 2316369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2316511:1
position: 2316511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2318563-2318691:1:exon

position:2318563:1
position: 2318563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2318691:1
position: 2318691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2319867-2319928:1:exon

position:2319867:1
position: 2319867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2319928:1
position: 2319928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:2321686-2321834:1:exon

position:2321686:1
position: 2321686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2321834:1
position: 2321834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:2323501-2323595:1:exon

position:2323501:1
position: 2323501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2323595:1
position: 2323595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:2325014-2325116:1:exon

position:2325014:1
position: 2325014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2325116:1
position: 2325116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:2327697-2335937:1:exon

position:2327697:1
position: 2327697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bicra
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: bicra
product: BRD4 interacting chromatin remodeling complex associated protein, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618134.1
SIO_010081: bicra
subclass of: SO_0000673
so part of: bicra
location: join(2213504..2213846,2288975..2289116,2294162..2294207,2297305..2297347,2301817..2301882,2305768..2307798,2310709..2310954,2313494..2314294,2315404..2315647,2316369..2316511,2318563..2318691,2319867..2319928,2321686..2321834,2323501..2323595,2325014..2325116,2327697..2335937)
location: region:2213504-2335937:1
so has part: feature:2213504-2213846:1:exon
so has part: feature:2288975-2289116:1:exon
so has part: feature:2294162-2294207:1:exon
so has part: feature:2297305-2297347:1:exon
so has part: feature:2301817-2301882:1:exon
so has part: feature:2305768-2307798:1:exon
so has part: feature:2310709-2310954:1:exon
so has part: feature:2313494-2314294:1:exon
so has part: feature:2315404-2315647:1:exon
so has part: feature:2316369-2316511:1:exon
so has part: feature:2318563-2318691:1:exon
so has part: feature:2319867-2319928:1:exon
so has part: feature:2321686-2321834:1:exon
so has part: feature:2323501-2323595:1:exon
so has part: feature:2325014-2325116:1:exon
so has part: feature:2327697-2335937:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2213504-2213846:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2288975-2289116:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2294162-2294207:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2297305-2297347:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2301817-2301882:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2305768-2307798:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2310709-2310954:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2313494-2314294:1:exon

position:2313494:1
position: 2313494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2315404-2315647:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2316369-2316511:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2318563-2318691:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2319867-2319928:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2321686-2321834:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2323501-2323595:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2325014-2325116:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2327697-2335937:1:exon

bicra
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: bicra
product: BRD4 interacting chromatin remodeling complex associated protein, transcript variant X3
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618135.1
SIO_010081: bicra
subclass of: SO_0000673
so part of: bicra
location: join(2213504..2213846,2294162..2294207,2297305..2297347,2301817..2301882,2305768..2307798,2310709..2310954,2313491..2314294,2315404..2315647,2316369..2316511,2318563..2318691,2319867..2319928,2321686..2321834,2323501..2323595,2325014..2325116,2327697..2335937)
location: region:2213504-2335937:1
so has part: feature:2213504-2213846:1:exon
so has part: feature:2294162-2294207:1:exon
so has part: feature:2297305-2297347:1:exon
so has part: feature:2301817-2301882:1:exon
so has part: feature:2305768-2307798:1:exon
so has part: feature:2310709-2310954:1:exon
so has part: feature:2313491-2314294:1:exon
so has part: feature:2315404-2315647:1:exon
so has part: feature:2316369-2316511:1:exon
so has part: feature:2318563-2318691:1:exon
so has part: feature:2319867-2319928:1:exon
so has part: feature:2321686-2321834:1:exon
so has part: feature:2323501-2323595:1:exon
so has part: feature:2325014-2325116:1:exon
so has part: feature:2327697-2335937:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2213504-2213846:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2294162-2294207:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2297305-2297347:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2301817-2301882:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2305768-2307798:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2310709-2310954:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2313491-2314294:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2315404-2315647:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2316369-2316511:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2318563-2318691:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2319867-2319928:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2321686-2321834:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2323501-2323595:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2325014-2325116:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2327697-2335937:1:exon

bicra
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: bicra
product: BRD4 interacting chromatin remodeling complex associated protein, transcript variant X4
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618136.1
SIO_010081: bicra
subclass of: SO_0000673
so part of: bicra
location: join(2213505..2213846,2288975..2289116,2294162..2294207,2297305..2297347,2301817..2301882,2305768..2307798,2313491..2314294,2315404..2315647,2316369..2316511,2318563..2318691,2319867..2319928,2321686..2321834,2323501..2323595,2325014..2325116,2327697..2335937)
location: region:2213505-2335937:1
so has part: feature:2213505-2213846:1:exon
so has part: feature:2288975-2289116:1:exon
so has part: feature:2294162-2294207:1:exon
so has part: feature:2297305-2297347:1:exon
so has part: feature:2301817-2301882:1:exon
so has part: feature:2305768-2307798:1:exon
so has part: feature:2313491-2314294:1:exon
so has part: feature:2315404-2315647:1:exon
so has part: feature:2316369-2316511:1:exon
so has part: feature:2318563-2318691:1:exon
so has part: feature:2319867-2319928:1:exon
so has part: feature:2321686-2321834:1:exon
so has part: feature:2323501-2323595:1:exon
so has part: feature:2325014-2325116:1:exon
so has part: feature:2327697-2335937:1:exon

position:2213505:1
position: 2213505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2213505-2213846:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2288975-2289116:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2294162-2294207:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2297305-2297347:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2301817-2301882:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2305768-2307798:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2313491-2314294:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2315404-2315647:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2316369-2316511:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2318563-2318691:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2319867-2319928:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2321686-2321834:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2323501-2323595:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2325014-2325116:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2327697-2335937:1:exon

bicra
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: bicra
product: BRD4 interacting chromatin remodeling complex associated protein, transcript variant X5
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618137.1
SIO_010081: bicra
subclass of: SO_0000673
so part of: bicra
location: join(2213505..2213846,2288975..2289116,2294162..2294207,2297305..2297347,2301817..2301882,2305768..2307798,2313494..2314294,2315404..2315647,2316369..2316511,2318563..2318691,2319867..2319928,2321686..2321834,2323501..2323595,2325014..2325116,2327697..2335937)
location: region:2213505-2335937:1
so has part: feature:2213505-2213846:1:exon
so has part: feature:2288975-2289116:1:exon
so has part: feature:2294162-2294207:1:exon
so has part: feature:2297305-2297347:1:exon
so has part: feature:2301817-2301882:1:exon
so has part: feature:2305768-2307798:1:exon
so has part: feature:2313494-2314294:1:exon
so has part: feature:2315404-2315647:1:exon
so has part: feature:2316369-2316511:1:exon
so has part: feature:2318563-2318691:1:exon
so has part: feature:2319867-2319928:1:exon
so has part: feature:2321686-2321834:1:exon
so has part: feature:2323501-2323595:1:exon
so has part: feature:2325014-2325116:1:exon
so has part: feature:2327697-2335937:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2213505-2213846:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2288975-2289116:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2294162-2294207:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2297305-2297347:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2301817-2301882:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2305768-2307798:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2313494-2314294:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2315404-2315647:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2316369-2316511:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2318563-2318691:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2319867-2319928:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2321686-2321834:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2323501-2323595:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2325014-2325116:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2327697-2335937:1:exon

mrps12
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: mrps12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2257178..2262192
location: region:2257178-2262192:1
so has part: feature:2257178-2262192:1:exon
subclass of: SO_0000010

109929699
type: Gene
SIO_000068: ncbigene

position:2257178:1
position: 2257178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2262192:1
position: 2262192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2257178-2262192:1:exon

mrps12
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: mrps12
product: mitochondrial ribosomal protein S12
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618141.1
SIO_010081: mrps12
subclass of: SO_0000673
so part of: mrps12
location: join(2257178..2257343,2259768..2259861,2261696..2262192)
location: region:2257178-2262192:1
so has part: feature:2257178-2257343:1:exon
so has part: feature:2259768-2259861:1:exon
so has part: feature:2261696-2262192:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2257178-2257343:1:exon

position:2257343:1
position: 2257343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2259768-2259861:1:exon

position:2259768:1
position: 2259768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2259861:1
position: 2259861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2261696-2262192:1:exon

position:2261696:1
position: 2261696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

mrps12
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: mrps12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 28S ribosomal protein S12, mitochondrial-like
translation: MFSTGMMRNWMSSLTLGAARLIGLSSASLFQRAFPAGVTLPAPVCQHNKRTMATLHQMHKMGKPKRAPRKAGPTFGRPQLKGVVLKTMIRKPKKPNSANRKCARVRLSNGKEVIVFIPGEGHNLQEHNIVLVEGGRTQDLPGVKLKVVRGKYDCAHVQKKK
SIO_010081: mrps12
subclass of: SO_0000673
so part of: mrps12
location: join(2259813..2259861,2261696..2262132)
location: region:2259813-2262132:1
so has part: feature:2259813-2259861:1:exon
so has part: feature:2261696-2262132:1:exon

XP_048474098.1
type: Protein
SIO_000068: ncbiprotein

position:2259813:1
position: 2259813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2262132:1
position: 2262132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2259813-2259861:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2261696-2262132:1:exon

socs9
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: socs9
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2265339..2269037)
location: region:2265339-2269037:-1
so has part: feature:2265339-2269037:-1:exon
subclass of: SO_0000010

109929709
type: Gene
SIO_000068: ncbigene

position:2265339:-1
position: 2265339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2269037:-1
position: 2269037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2265339-2269037:-1:exon

socs9
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: socs9
product: suppressor of cytokine signaling 9, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618140.1
SIO_010081: socs9
subclass of: SO_0000673
so part of: socs9
location: complement(join(2265339..2267762,2268871..2269037))
location: region:2265339-2269037:-1
so has part: feature:2268871-2269037:-1:exon
so has part: feature:2265339-2267762:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2268871-2269037:-1:exon

position:2268871:-1
position: 2268871
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2265339-2267762:-1:exon

position:2267762:-1
position: 2267762
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

socs9
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: socs9
product: suppressor of cytokine signaling 9, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_020529277.2
SIO_010081: socs9
subclass of: SO_0000673
so part of: socs9
location: complement(join(2265339..2267762,2267885..2269024))
location: region:2265339-2269024:-1
so has part: feature:2267885-2269024:-1:exon
so has part: feature:2265339-2267762:-1:exon

position:2269024:-1
position: 2269024
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2267885-2269024:-1:exon

position:2267885:-1
position: 2267885
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2265339-2267762:-1:exon

socs9
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: socs9
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: suppressor of cytokine signaling 9
translation: MSESQENEKPEKDKRAVRPKVRRGDPEDQGGSRSKKKNKNSHKSDLFVGDSGCGQKKENVRSHSGRKLGRQSPDRTQEDSHNVGACKLHSRSLKQRIQDVVGQCFPIKSHSLHSATLSSSKRKIHISELMLDKCPFPAGTDLAQKWYLIKQHTAPVSQSLPMLDAASSGGTPVEDEDDRLRERRRISIEQGVEPPPHAQIHTFEVTAQINPLYKLGPKLAPGMNELAGDDRATLQVQESTSVEELPPPQVPPEQVEIKDGYRAHTQIDYIHCLVPDLLELTTFPCYWGVMDRYQAEALLEGKPEGAFLLRDSAQEDYLFSVSFRRYSRSLHARIEQWNHNFSFDVHDPSVFHAPTVTGLLEHYKDPNSCMFFEPLLSNPINRTFPFSLQHICRAAISSCSTYDGIDLLPIPNTLKEYLKEYHYKQKVRVRRLDTR
SIO_010081: socs9
subclass of: SO_0000673
so part of: socs9
location: complement(2266228..2267535)
location: region:2266228-2267535:-1
so has part: feature:2266228-2267535:-1:exon

XP_048474097.1
type: Protein
SIO_000068: ncbiprotein

position:2266228:-1
position: 2266228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2267535:-1
position: 2267535
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2266228-2267535:-1:exon

socs9
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: socs9
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: suppressor of cytokine signaling 9
translation: MSESQENEKPEKDKRAVRPKVRRGDPEDQGGSRSKKKNKNSHKSDLFVGDSGCGQKKENVRSHSGRKLGRQSPDRTQEDSHNVGACKLHSRSLKQRIQDVVGQCFPIKSHSLHSATLSSSKRKIHISELMLDKCPFPAGTDLAQKWYLIKQHTAPVSQSLPMLDAASSGGTPVEDEDDRLRERRRISIEQGVEPPPHAQIHTFEVTAQINPLYKLGPKLAPGMNELAGDDRATLQVQESTSVEELPPPQVPPEQVEIKDGYRAHTQIDYIHCLVPDLLELTTFPCYWGVMDRYQAEALLEGKPEGAFLLRDSAQEDYLFSVSFRRYSRSLHARIEQWNHNFSFDVHDPSVFHAPTVTGLLEHYKDPNSCMFFEPLLSNPINRTFPFSLQHICRAAISSCSTYDGIDLLPIPNTLKEYLKEYHYKQKVRVRRLDTR
SIO_010081: socs9
subclass of: SO_0000673
so part of: socs9
location: complement(2266228..2267535)
location: region:2266228-2267535:-1
so has part: feature:2266228-2267535:-1:exon

XP_020384866.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2266228-2267535:-1:exon

LOC109924603
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC109924603
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2281380..2287760)
location: region:2281380-2287760:-1
so has part: feature:2281380-2287760:-1:exon
subclass of: SO_0000010

109924603
type: Gene
SIO_000068: ncbigene

position:2281380:-1
position: 2281380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2287760:-1
position: 2287760
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2281380-2287760:-1:exon

LOC109924603
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109924603
product: E3 SUMO-protein ligase ZBED1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_048618138.1
SIO_010081: LOC109924603
subclass of: SO_0000673
so part of: LOC109924603
location: complement(join(2281380..2285071,2286531..2286666,2287416..2287760))
location: region:2281380-2287760:-1
so has part: feature:2287416-2287760:-1:exon
so has part: feature:2286531-2286666:-1:exon
so has part: feature:2281380-2285071:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2287416-2287760:-1:exon

position:2287416:-1
position: 2287416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2286531-2286666:-1:exon

position:2286531:-1
position: 2286531
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2286666:-1
position: 2286666
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2281380-2285071:-1:exon

position:2285071:-1
position: 2285071
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC109924603
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109924603
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 SUMO-protein ligase ZBED1-like
translation: MLLFYFILFRPVPMWSHRCSEMAPASDVWKYVTRRDDKTVVCNICRKELVVSGSNTILRLHLERNHRVHFTEEAGHNKLQGEPRTERIPGILSTKDRAPKIMQLIGIDNPATVTTHSSSRISEMLRECAAQLETEQHQEIHSFAGGGEPCTALAEDELSMVLQSYHLARDGSVGSRRRKETELNYARASQVSCQEKSQTWDFFKKLNERCVECSLCRKQLCYHNSATSLREHLRRKHNLSELDLRQSQDEGSSSSESMGQELEVKKNKPVSISELVLHDAKACSEKREEVISNLILGMVFRDLQPISFVNNEGFKRLLGFLQPGYKIPSSVHLTASLRHKYAVAKLQLEHYLHSVPSLTLSTDTWTSQGKQTYLTVVGHFIDCRWRLARCVLKTTPQYNPAPDYIGELLYSVISEFGVSCKAVNCVVHDSAGNLMSSSRLLQERFGWSSLCCAGRMLQLCIKLGLQVEQVQHTLSVARRIVNHFVHSARANAELSTKLAEMNKERLVLVIDTATRWSSTFDMCERLLELRWAVSMVLEEDRTGHMTVENLSDHQWKLLQDLLPVLKTLKVASSFLSEEHNASVSSLVPCLHGVMTALMQHHGDPGCIVKAVSAKIRTEIAKRWRLPDDDEMMESPAIVASFLDPRFKDLRFLSADMRDKVHNKVKNMLSSAVASPRSRSSSSSSDEHSITDHEQGSKQRSRKGGRRPSQCEYDLLFGEDPIERMPEIHQQLESYLAEPLRKRNTNPFDWWKNNEHRFPAVANLAKQYLAIPATSVSATRAFFCSSSIPDQTRSALLPDNIDQILFLHKNFDYIESLKRYRQ
SIO_010081: LOC109924603
subclass of: SO_0000673
so part of: LOC109924603
location: complement(join(2283072..2285071,2286531..2286666,2287416..2287745))
location: region:2283072-2287745:-1
so has part: feature:2287416-2287745:-1:exon
so has part: feature:2286531-2286666:-1:exon
so has part: feature:2283072-2285071:-1:exon

XP_048474095.1
type: Protein
SIO_000068: ncbiprotein

position:2283072:-1
position: 2283072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2287745:-1
position: 2287745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2287416-2287745:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2286531-2286666:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2283072-2285071:-1:exon

bicra
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: bicra
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: BRD4-interacting chromatin-remodeling complex-associated protein isoform X1
translation: MMSARAVDMDDEDGRCLLDVICDPQALNDFLHGSDQLDGDDLLDTTADPASAFFTDASLNVQDTTVNHLNSGQTQNSSSAVDLDFLEDDILGPSPGSNLQNSDQPCDILQQSLQEANITEQSLEEDADLDIASLHFPSLQPVSQAADASQLFSTSADLIGLQQQPTVLAQQTLIQQQTIGGQVVNKAINVQPFLQQVGLGNVTLQPVSNLQGLPNGSPTGTLGIGQIQVLGQLSNQSVMTINQPAQQIITKAGQPTQVTTVPVGSYISSPTSDQQQVALNSAGVSPPNAGLVLHKSAPPGALNGNSLFAGTSIAQANQALTVRPTMSNPMMQAPLSAQNVIIQRTPTPIQPKPTGGVIQHKLFQISSKPFASTNTALTIQNETSLQQQQQQQQKAQQNVTFMAGKPVQNVVFSASGTGFPQTISSSVFKQHQAQQQALGKSLSLHLQGGSIVIQPQHMQQAMLQSQNQFLLQGQLSGASAVPLSQQLSALQANVGGQILTAQSAGGQAPATHIIASQGPAGQLITNQTLPAQILTNQNIAGQLNLSQVIAAQNAHGATHILSAPIQLQPGPVGQSAVFQMPVSLANSLNPQTSASVQATLAGGAINQQSQSAVIQGVTLPNQVTMLNSGEGLGQAVSIQQPASNAQGSSVIQQQAGPGPGLMALGNGQPSLLTVQTAIASPAQPSQQQQPGQTQLALAPQSSSSNMVQTPGKIIISQQGSAGVISQDAADMFFQQQEQKQQQLYQAALKLQQEKGLNQPSPLSLAPTATTSSVPASVIVSSSVGLVPATPAGHADSKGQTVLPSLPSTPFQQIRAGQQMATGQQKTALQQLPVTSQSPLPQTPQNDSQLHLQIQSPHQMQSPHQMQSPHQSRPPSQPQPLSRPPSRPQSRPSSQPQVLSRPPSEPLSRSCTPSQLPLQPLYVIQTQVQSSPHGTPQGQHPMRPPSQPHVQVQFQNPSQPEPQPQPQSQAQLTSPTQIHLQVQPTPQVQSQAEVQTPSHLLHPSTASSQVPADHHLTPSQSQSQHVQLQLHCQSQAQAPLQPVYQTLHLTAEQQHRFQMVTSQLQSMSSIPNPTDQHKNIMEKLQQMQHNIILQAKQSAANQTVTGFGPLSSQAPTMLISSQVQSPSVPAQVHTTSASMKSQSHGGGQAALATLLQQTSVLVKTSSAGTTTTTRSPDSKVISGGVPGSTCHIQQGTAVPIQMKPLAQHQIQPALQTKPGVISSISGLNMNLTKGPIQIQLLGKGLTQLMPATSVPAHQMDNKLGGSKVPVSLKPTKEAVILDSLDKHRNAVLQPDYKSRFRSYEDMVHRLLPYHLYQGTLPSDEEHRKVDEEFEAVSTQLLKRTQAMLSKYRMLLFEEARRLSPSAEMVMIDRMFIQEEKTSLTTDKQLAKEKPDEYVASSSRSHGLATSSPSPSCNASAASLETPRAPSTQTATPIQPTKLVIKHSGASPSVSWARDGDDETLHTRSRPPPMKTYEARSRIGLKLKIKQEAGLSKVVHNTALDPVHQSVTTSSVIKSTECLVVTSVGQMNGTLEHATPSPAENKPPRSANYCKLPPRKTYRENAQSLSADRTAVTPPQGGTVRVEDSQKETASKCEESSKSVIATCKSAESPKVRTARGRAEESAVVSSFSRKARTHTHHLPPKSEEPPGGRAEDGTGGLMKELSDVEDELIIKADPPDGPWELALPPAKRSKSESFDMDNASFSSDSPQDDTLNEHLQSAINSILNLRQPQSVSVTQNPVSSPYNSSEMNSSPFSPAPHSDSYLAPNHNGGLGARTYTR
SIO_010081: bicra
subclass of: SO_0000673
so part of: bicra
location: join(2289098..2289116,2294162..2294207,2297305..2297347,2301817..2301882,2305768..2307798,2310709..2310954,2313491..2314294,2315404..2315647,2316369..2316511,2318563..2318691,2319867..2319928,2321686..2321834,2323501..2323595,2325014..2325116,2327697..2328859)
location: region:2289098-2328859:1
so has part: feature:2289098-2289116:1:exon
so has part: feature:2294162-2294207:1:exon
so has part: feature:2297305-2297347:1:exon
so has part: feature:2301817-2301882:1:exon
so has part: feature:2305768-2307798:1:exon
so has part: feature:2310709-2310954:1:exon
so has part: feature:2313491-2314294:1:exon
so has part: feature:2315404-2315647:1:exon
so has part: feature:2316369-2316511:1:exon
so has part: feature:2318563-2318691:1:exon
so has part: feature:2319867-2319928:1:exon
so has part: feature:2321686-2321834:1:exon
so has part: feature:2323501-2323595:1:exon
so has part: feature:2325014-2325116:1:exon
so has part: feature:2327697-2328859:1:exon

XP_048474090.1
type: Protein
SIO_000068: ncbiprotein

position:2289098:1
position: 2289098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2328859:1
position: 2328859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2289098-2289116:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2294162-2294207:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2297305-2297347:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2301817-2301882:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2305768-2307798:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2310709-2310954:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2313491-2314294:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2315404-2315647:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2316369-2316511:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2318563-2318691:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2319867-2319928:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2321686-2321834:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2323501-2323595:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2325014-2325116:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2327697-2328859:1:exon

bicra
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: bicra
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: BRD4-interacting chromatin-remodeling complex-associated protein isoform X2
translation: MMSARAVDMDDEDGRCLLDVICDPQALNDFLHGSDQLDGDDLLDTTADPASAFFTDASLNVQDTTVNHLNSGQTQNSSSAVDLDFLEDDILGPSPGSNLQNSDQPCDILQQSLQEANITEQSLEEDADLDIASLHFPSLQPVSQAADASQLFSTSADLIGLQQQPTVLAQQTLIQQQTIGGQVVNKAINVQPFLQQVGLGNVTLQPVSNLQGLPNGSPTGTLGIGQIQVLGQLSNQSVMTINQPAQQIITKAGQPTQVTTVPVGSYISSPTSDQQQVALNSAGVSPPNAGLVLHKSAPPGALNGNSLFAGTSIAQANQALTVRPTMSNPMMQAPLSAQNVIIQRTPTPIQPKPTGGVIQHKLFQISSKPFASTNTALTIQNETSLQQQQQQQQKAQQNVTFMAGKPVQNVVFSASGTGFPQTISSSVFKQHQAQQQALGKSLSLHLQGGSIVIQPQHMQQAMLQSQNQFLLQGQLSGASAVPLSQQLSALQANVGGQILTAQSAGGQAPATHIIASQGPAGQLITNQTLPAQILTNQNIAGQLNLSQVIAAQNAHGATHILSAPIQLQPGPVGQSAVFQMPVSLANSLNPQTSASVQATLAGGAINQQSQSAVIQGVTLPNQVTMLNSGEGLGQAVSIQQPASNAQGSSVIQQQAGPGPGLMALGNGQPSLLTVQTAIASPAQPSQQQQPGQTQLALAPQSSSSNMVQTPGKIIISQQGSAGVISQDAADMFFQQQEQKQQQLYQAALKLQQEKGLNQPSPLSLAPTATTSSVPASVIVSSSVGLVPATPAGHADSKGQTVLPSLPSTPFQQIRAGQMATGQQKTALQQLPVTSQSPLPQTPQNDSQLHLQIQSPHQMQSPHQMQSPHQSRPPSQPQPLSRPPSRPQSRPSSQPQVLSRPPSEPLSRSCTPSQLPLQPLYVIQTQVQSSPHGTPQGQHPMRPPSQPHVQVQFQNPSQPEPQPQPQSQAQLTSPTQIHLQVQPTPQVQSQAEVQTPSHLLHPSTASSQVPADHHLTPSQSQSQHVQLQLHCQSQAQAPLQPVYQTLHLTAEQQHRFQMVTSQLQSMSSIPNPTDQHKNIMEKLQQMQHNIILQAKQSAANQTVTGFGPLSSQAPTMLISSQVQSPSVPAQVHTTSASMKSQSHGGGQAALATLLQQTSVLVKTSSAGTTTTTRSPDSKVISGGVPGSTCHIQQGTAVPIQMKPLAQHQIQPALQTKPGVISSISGLNMNLTKGPIQIQLLGKGLTQLMPATSVPAHQMDNKLGGSKVPVSLKPTKEAVILDSLDKHRNAVLQPDYKSRFRSYEDMVHRLLPYHLYQGTLPSDEEHRKVDEEFEAVSTQLLKRTQAMLSKYRMLLFEEARRLSPSAEMVMIDRMFIQEEKTSLTTDKQLAKEKPDEYVASSSRSHGLATSSPSPSCNASAASLETPRAPSTQTATPIQPTKLVIKHSGASPSVSWARDGDDETLHTRSRPPPMKTYEARSRIGLKLKIKQEAGLSKVVHNTALDPVHQSVTTSSVIKSTECLVVTSVGQMNGTLEHATPSPAENKPPRSANYCKLPPRKTYRENAQSLSADRTAVTPPQGGTVRVEDSQKETASKCEESSKSVIATCKSAESPKVRTARGRAEESAVVSSFSRKARTHTHHLPPKSEEPPGGRAEDGTGGLMKELSDVEDELIIKADPPDGPWELALPPAKRSKSESFDMDNASFSSDSPQDDTLNEHLQSAINSILNLRQPQSVSVTQNPVSSPYNSSEMNSSPFSPAPHSDSYLAPNHNGGLGARTYTR
SIO_010081: bicra
subclass of: SO_0000673
so part of: bicra
location: join(2289098..2289116,2294162..2294207,2297305..2297347,2301817..2301882,2305768..2307798,2310709..2310954,2313494..2314294,2315404..2315647,2316369..2316511,2318563..2318691,2319867..2319928,2321686..2321834,2323501..2323595,2325014..2325116,2327697..2328859)
location: region:2289098-2328859:1
so has part: feature:2289098-2289116:1:exon
so has part: feature:2294162-2294207:1:exon
so has part: feature:2297305-2297347:1:exon
so has part: feature:2301817-2301882:1:exon
so has part: feature:2305768-2307798:1:exon
so has part: feature:2310709-2310954:1:exon
so has part: feature:2313494-2314294:1:exon
so has part: feature:2315404-2315647:1:exon
so has part: feature:2316369-2316511:1:exon
so has part: feature:2318563-2318691:1:exon
so has part: feature:2319867-2319928:1:exon
so has part: feature:2321686-2321834:1:exon
so has part: feature:2323501-2323595:1:exon
so has part: feature:2325014-2325116:1:exon
so has part: feature:2327697-2328859:1:exon

XP_048474091.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2289098-2289116:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2294162-2294207:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2297305-2297347:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2301817-2301882:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2305768-2307798:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2310709-2310954:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2313494-2314294:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2315404-2315647:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2316369-2316511:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2318563-2318691:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2319867-2319928:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2321686-2321834:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2323501-2323595:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2325014-2325116:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2327697-2328859:1:exon

bicra
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: bicra
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: BRD4-interacting chromatin-remodeling complex-associated protein isoform X4
translation: MMSARAVDMDDEDGRCLLDVICDPQALNDFLHGSDQLDGDDLLDTTADPASAFFTDASLNVQDTTVNHLNSGQTQNSSSAVDLDFLEDDILGPSPGSNLQNSDQPCDILQQSLQEANITEQSLEEDADLDIASLHFPSLQPVSQAADASQLFSTSADLIGLQQQPTVLAQQTLIQQQTIGGQVVNKAINVQPFLQQVGLGNVTLQPVSNLQGLPNGSPTGTLGIGQIQVLGQLSNQSVMTINQPAQQIITKAGQPTQVTTVPVGSYISSPTSDQQQVALNSAGVSPPNAGLVLHKSAPPGALNGNSLFAGTSIAQANQALTVRPTMSNPMMQAPLSAQNVIIQRTPTPIQPKPTGGVIQHKLFQISSKPFASTNTALTIQNETSLQQQQQQQQKAQQNVTFMAGKPVQNVVFSASGTGFPQTISSSVFKQHQAQQQALGKSLSLHLQGGSIVIQPQHMQQAMLQSQNQFLLQGQLSGASAVPLSQQLSALQANVGGQILTAQSAGGQAPATHIIASQGPAGQLITNQTLPAQILTNQNIAGQLNLSQVIAAQNAHGATHILSAPIQLQPGPVGQSAVFQMPVSLANSLNPQTSASVQATLAGGAINQQSQSAVIQGVTLPNQVTMLNSGEGLGQAVSIQQPASNAQGSSVIQQQAGPGPGLMALGNGQPSLLTVQTAIASPAQPSQQQQPGQTQLALAPQSSSSNMVQTPGKIIISQQGSAGVISQDAADMFFQQQMATGQQKTALQQLPVTSQSPLPQTPQNDSQLHLQIQSPHQMQSPHQMQSPHQSRPPSQPQPLSRPPSRPQSRPSSQPQVLSRPPSEPLSRSCTPSQLPLQPLYVIQTQVQSSPHGTPQGQHPMRPPSQPHVQVQFQNPSQPEPQPQPQSQAQLTSPTQIHLQVQPTPQVQSQAEVQTPSHLLHPSTASSQVPADHHLTPSQSQSQHVQLQLHCQSQAQAPLQPVYQTLHLTAEQQHRFQMVTSQLQSMSSIPNPTDQHKNIMEKLQQMQHNIILQAKQSAANQTVTGFGPLSSQAPTMLISSQVQSPSVPAQVHTTSASMKSQSHGGGQAALATLLQQTSVLVKTSSAGTTTTTRSPDSKVISGGVPGSTCHIQQGTAVPIQMKPLAQHQIQPALQTKPGVISSISGLNMNLTKGPIQIQLLGKGLTQLMPATSVPAHQMDNKLGGSKVPVSLKPTKEAVILDSLDKHRNAVLQPDYKSRFRSYEDMVHRLLPYHLYQGTLPSDEEHRKVDEEFEAVSTQLLKRTQAMLSKYRMLLFEEARRLSPSAEMVMIDRMFIQEEKTSLTTDKQLAKEKPDEYVASSSRSHGLATSSPSPSCNASAASLETPRAPSTQTATPIQPTKLVIKHSGASPSVSWARDGDDETLHTRSRPPPMKTYEARSRIGLKLKIKQEAGLSKVVHNTALDPVHQSVTTSSVIKSTECLVVTSVGQMNGTLEHATPSPAENKPPRSANYCKLPPRKTYRENAQSLSADRTAVTPPQGGTVRVEDSQKETASKCEESSKSVIATCKSAESPKVRTARGRAEESAVVSSFSRKARTHTHHLPPKSEEPPGGRAEDGTGGLMKELSDVEDELIIKADPPDGPWELALPPAKRSKSESFDMDNASFSSDSPQDDTLNEHLQSAINSILNLRQPQSVSVTQNPVSSPYNSSEMNSSPFSPAPHSDSYLAPNHNGGLGARTYTR
SIO_010081: bicra
subclass of: SO_0000673
so part of: bicra
location: join(2289098..2289116,2294162..2294207,2297305..2297347,2301817..2301882,2305768..2307798,2313491..2314294,2315404..2315647,2316369..2316511,2318563..2318691,2319867..2319928,2321686..2321834,2323501..2323595,2325014..2325116,2327697..2328859)
location: region:2289098-2328859:1
so has part: feature:2289098-2289116:1:exon
so has part: feature:2294162-2294207:1:exon
so has part: feature:2297305-2297347:1:exon
so has part: feature:2301817-2301882:1:exon
so has part: feature:2305768-2307798:1:exon
so has part: feature:2313491-2314294:1:exon
so has part: feature:2315404-2315647:1:exon
so has part: feature:2316369-2316511:1:exon
so has part: feature:2318563-2318691:1:exon
so has part: feature:2319867-2319928:1:exon
so has part: feature:2321686-2321834:1:exon
so has part: feature:2323501-2323595:1:exon
so has part: feature:2325014-2325116:1:exon
so has part: feature:2327697-2328859:1:exon

XP_048474093.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2289098-2289116:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2294162-2294207:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2297305-2297347:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2301817-2301882:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2305768-2307798:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2313491-2314294:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2315404-2315647:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2316369-2316511:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2318563-2318691:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2319867-2319928:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2321686-2321834:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2323501-2323595:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2325014-2325116:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2327697-2328859:1:exon

bicra
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: bicra
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: BRD4-interacting chromatin-remodeling complex-associated protein isoform X5
translation: MMSARAVDMDDEDGRCLLDVICDPQALNDFLHGSDQLDGDDLLDTTADPASAFFTDASLNVQDTTVNHLNSGQTQNSSSAVDLDFLEDDILGPSPGSNLQNSDQPCDILQQSLQEANITEQSLEEDADLDIASLHFPSLQPVSQAADASQLFSTSADLIGLQQQPTVLAQQTLIQQQTIGGQVVNKAINVQPFLQQVGLGNVTLQPVSNLQGLPNGSPTGTLGIGQIQVLGQLSNQSVMTINQPAQQIITKAGQPTQVTTVPVGSYISSPTSDQQQVALNSAGVSPPNAGLVLHKSAPPGALNGNSLFAGTSIAQANQALTVRPTMSNPMMQAPLSAQNVIIQRTPTPIQPKPTGGVIQHKLFQISSKPFASTNTALTIQNETSLQQQQQQQQKAQQNVTFMAGKPVQNVVFSASGTGFPQTISSSVFKQHQAQQQALGKSLSLHLQGGSIVIQPQHMQQAMLQSQNQFLLQGQLSGASAVPLSQQLSALQANVGGQILTAQSAGGQAPATHIIASQGPAGQLITNQTLPAQILTNQNIAGQLNLSQVIAAQNAHGATHILSAPIQLQPGPVGQSAVFQMPVSLANSLNPQTSASVQATLAGGAINQQSQSAVIQGVTLPNQVTMLNSGEGLGQAVSIQQPASNAQGSSVIQQQAGPGPGLMALGNGQPSLLTVQTAIASPAQPSQQQQPGQTQLALAPQSSSSNMVQTPGKIIISQQGSAGVISQDAADMFFQQMATGQQKTALQQLPVTSQSPLPQTPQNDSQLHLQIQSPHQMQSPHQMQSPHQSRPPSQPQPLSRPPSRPQSRPSSQPQVLSRPPSEPLSRSCTPSQLPLQPLYVIQTQVQSSPHGTPQGQHPMRPPSQPHVQVQFQNPSQPEPQPQPQSQAQLTSPTQIHLQVQPTPQVQSQAEVQTPSHLLHPSTASSQVPADHHLTPSQSQSQHVQLQLHCQSQAQAPLQPVYQTLHLTAEQQHRFQMVTSQLQSMSSIPNPTDQHKNIMEKLQQMQHNIILQAKQSAANQTVTGFGPLSSQAPTMLISSQVQSPSVPAQVHTTSASMKSQSHGGGQAALATLLQQTSVLVKTSSAGTTTTTRSPDSKVISGGVPGSTCHIQQGTAVPIQMKPLAQHQIQPALQTKPGVISSISGLNMNLTKGPIQIQLLGKGLTQLMPATSVPAHQMDNKLGGSKVPVSLKPTKEAVILDSLDKHRNAVLQPDYKSRFRSYEDMVHRLLPYHLYQGTLPSDEEHRKVDEEFEAVSTQLLKRTQAMLSKYRMLLFEEARRLSPSAEMVMIDRMFIQEEKTSLTTDKQLAKEKPDEYVASSSRSHGLATSSPSPSCNASAASLETPRAPSTQTATPIQPTKLVIKHSGASPSVSWARDGDDETLHTRSRPPPMKTYEARSRIGLKLKIKQEAGLSKVVHNTALDPVHQSVTTSSVIKSTECLVVTSVGQMNGTLEHATPSPAENKPPRSANYCKLPPRKTYRENAQSLSADRTAVTPPQGGTVRVEDSQKETASKCEESSKSVIATCKSAESPKVRTARGRAEESAVVSSFSRKARTHTHHLPPKSEEPPGGRAEDGTGGLMKELSDVEDELIIKADPPDGPWELALPPAKRSKSESFDMDNASFSSDSPQDDTLNEHLQSAINSILNLRQPQSVSVTQNPVSSPYNSSEMNSSPFSPAPHSDSYLAPNHNGGLGARTYTR
SIO_010081: bicra
subclass of: SO_0000673
so part of: bicra
location: join(2289098..2289116,2294162..2294207,2297305..2297347,2301817..2301882,2305768..2307798,2313494..2314294,2315404..2315647,2316369..2316511,2318563..2318691,2319867..2319928,2321686..2321834,2323501..2323595,2325014..2325116,2327697..2328859)
location: region:2289098-2328859:1
so has part: feature:2289098-2289116:1:exon
so has part: feature:2294162-2294207:1:exon
so has part: feature:2297305-2297347:1:exon
so has part: feature:2301817-2301882:1:exon
so has part: feature:2305768-2307798:1:exon
so has part: feature:2313494-2314294:1:exon
so has part: feature:2315404-2315647:1:exon
so has part: feature:2316369-2316511:1:exon
so has part: feature:2318563-2318691:1:exon
so has part: feature:2319867-2319928:1:exon
so has part: feature:2321686-2321834:1:exon
so has part: feature:2323501-2323595:1:exon
so has part: feature:2325014-2325116:1:exon
so has part: feature:2327697-2328859:1:exon

XP_048474094.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2289098-2289116:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2294162-2294207:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2297305-2297347:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2301817-2301882:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2305768-2307798:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2313494-2314294:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2315404-2315647:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2316369-2316511:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2318563-2318691:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2319867-2319928:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2321686-2321834:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2323501-2323595:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2325014-2325116:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2327697-2328859:1:exon

bicra
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: bicra
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: BRD4-interacting chromatin-remodeling complex-associated protein isoform X3
translation: MDDEDGRCLLDVICDPQALNDFLHGSDQLDGDDLLDTTADPASAFFTDASLNVQDTTVNHLNSGQTQNSSSAVDLDFLEDDILGPSPGSNLQNSDQPCDILQQSLQEANITEQSLEEDADLDIASLHFPSLQPVSQAADASQLFSTSADLIGLQQQPTVLAQQTLIQQQTIGGQVVNKAINVQPFLQQVGLGNVTLQPVSNLQGLPNGSPTGTLGIGQIQVLGQLSNQSVMTINQPAQQIITKAGQPTQVTTVPVGSYISSPTSDQQQVALNSAGVSPPNAGLVLHKSAPPGALNGNSLFAGTSIAQANQALTVRPTMSNPMMQAPLSAQNVIIQRTPTPIQPKPTGGVIQHKLFQISSKPFASTNTALTIQNETSLQQQQQQQQKAQQNVTFMAGKPVQNVVFSASGTGFPQTISSSVFKQHQAQQQALGKSLSLHLQGGSIVIQPQHMQQAMLQSQNQFLLQGQLSGASAVPLSQQLSALQANVGGQILTAQSAGGQAPATHIIASQGPAGQLITNQTLPAQILTNQNIAGQLNLSQVIAAQNAHGATHILSAPIQLQPGPVGQSAVFQMPVSLANSLNPQTSASVQATLAGGAINQQSQSAVIQGVTLPNQVTMLNSGEGLGQAVSIQQPASNAQGSSVIQQQAGPGPGLMALGNGQPSLLTVQTAIASPAQPSQQQQPGQTQLALAPQSSSSNMVQTPGKIIISQQGSAGVISQDAADMFFQQQEQKQQQLYQAALKLQQEKGLNQPSPLSLAPTATTSSVPASVIVSSSVGLVPATPAGHADSKGQTVLPSLPSTPFQQIRAGQQMATGQQKTALQQLPVTSQSPLPQTPQNDSQLHLQIQSPHQMQSPHQMQSPHQSRPPSQPQPLSRPPSRPQSRPSSQPQVLSRPPSEPLSRSCTPSQLPLQPLYVIQTQVQSSPHGTPQGQHPMRPPSQPHVQVQFQNPSQPEPQPQPQSQAQLTSPTQIHLQVQPTPQVQSQAEVQTPSHLLHPSTASSQVPADHHLTPSQSQSQHVQLQLHCQSQAQAPLQPVYQTLHLTAEQQHRFQMVTSQLQSMSSIPNPTDQHKNIMEKLQQMQHNIILQAKQSAANQTVTGFGPLSSQAPTMLISSQVQSPSVPAQVHTTSASMKSQSHGGGQAALATLLQQTSVLVKTSSAGTTTTTRSPDSKVISGGVPGSTCHIQQGTAVPIQMKPLAQHQIQPALQTKPGVISSISGLNMNLTKGPIQIQLLGKGLTQLMPATSVPAHQMDNKLGGSKVPVSLKPTKEAVILDSLDKHRNAVLQPDYKSRFRSYEDMVHRLLPYHLYQGTLPSDEEHRKVDEEFEAVSTQLLKRTQAMLSKYRMLLFEEARRLSPSAEMVMIDRMFIQEEKTSLTTDKQLAKEKPDEYVASSSRSHGLATSSPSPSCNASAASLETPRAPSTQTATPIQPTKLVIKHSGASPSVSWARDGDDETLHTRSRPPPMKTYEARSRIGLKLKIKQEAGLSKVVHNTALDPVHQSVTTSSVIKSTECLVVTSVGQMNGTLEHATPSPAENKPPRSANYCKLPPRKTYRENAQSLSADRTAVTPPQGGTVRVEDSQKETASKCEESSKSVIATCKSAESPKVRTARGRAEESAVVSSFSRKARTHTHHLPPKSEEPPGGRAEDGTGGLMKELSDVEDELIIKADPPDGPWELALPPAKRSKSESFDMDNASFSSDSPQDDTLNEHLQSAINSILNLRQPQSVSVTQNPVSSPYNSSEMNSSPFSPAPHSDSYLAPNHNGGLGARTYTR
SIO_010081: bicra
subclass of: SO_0000673
so part of: bicra
location: join(2294167..2294207,2297305..2297347,2301817..2301882,2305768..2307798,2310709..2310954,2313491..2314294,2315404..2315647,2316369..2316511,2318563..2318691,2319867..2319928,2321686..2321834,2323501..2323595,2325014..2325116,2327697..2328859)
location: region:2294167-2328859:1
so has part: feature:2294167-2294207:1:exon
so has part: feature:2297305-2297347:1:exon
so has part: feature:2301817-2301882:1:exon
so has part: feature:2305768-2307798:1:exon
so has part: feature:2310709-2310954:1:exon
so has part: feature:2313491-2314294:1:exon
so has part: feature:2315404-2315647:1:exon
so has part: feature:2316369-2316511:1:exon
so has part: feature:2318563-2318691:1:exon
so has part: feature:2319867-2319928:1:exon
so has part: feature:2321686-2321834:1:exon
so has part: feature:2323501-2323595:1:exon
so has part: feature:2325014-2325116:1:exon
so has part: feature:2327697-2328859:1:exon

XP_048474092.1
type: Protein
SIO_000068: ncbiprotein

position:2294167:1
position: 2294167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2294167-2294207:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2297305-2297347:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2301817-2301882:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2305768-2307798:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2310709-2310954:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2313491-2314294:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2315404-2315647:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2316369-2316511:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2318563-2318691:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2319867-2319928:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2321686-2321834:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2323501-2323595:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2325014-2325116:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2327697-2328859:1:exon

LOC109938654
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC109938654
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2344115..2373492
location: region:2344115-2373492:1
so has part: feature:2344115-2373492:1:exon
subclass of: SO_0000010

109938654
type: Gene
SIO_000068: ncbigene

position:2344115:1
position: 2344115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2373492:1
position: 2373492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2344115-2373492:1:exon

LOC109938654
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109938654
product: EH domain-containing protein 2-like
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618142.1
SIO_010081: LOC109938654
subclass of: SO_0000673
so part of: LOC109938654
location: join(2344115..2344840,2346612..2346615,2357742..2357785,2359005..2359033,2361305..2361738,2366905..2367069,2369520..2373492)
location: region:2344115-2373492:1
so has part: feature:2344115-2344840:1:exon
so has part: feature:2346612-2346615:1:exon
so has part: feature:2357742-2357785:1:exon
so has part: feature:2359005-2359033:1:exon
so has part: feature:2361305-2361738:1:exon
so has part: feature:2366905-2367069:1:exon
so has part: feature:2369520-2373492:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2344115-2344840:1:exon

position:2344840:1
position: 2344840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2346612-2346615:1:exon

position:2346612:1
position: 2346612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2346615:1
position: 2346615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2357742-2357785:1:exon

position:2357742:1
position: 2357742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2357785:1
position: 2357785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2359005-2359033:1:exon

position:2359005:1
position: 2359005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2359033:1
position: 2359033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2361305-2361738:1:exon

position:2361305:1
position: 2361305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2361738:1
position: 2361738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2366905-2367069:1:exon

position:2366905:1
position: 2366905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2367069:1
position: 2367069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2369520-2373492:1:exon

position:2369520:1
position: 2369520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109938654
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109938654
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: EH domain-containing protein 2-like
translation: MFSWMKKHEKKKEEVIEKAHTVTEGLKELYKTKLLPLENFYKFHDFHTPSLEDADFDNKPMILVVGQYSTGKTTFIQYLLEEDFPGSRVGPEPTTDSFIAVMHGETESVIPGNALMVDANKPFRKLTPFGNSFLNRFNCSGSPPPLLNHFSLSTTESILSGSISFCPAGYDLAAVLQWFAQRVDRIILLFDAHKLEISDEFSEAIRALKGNEDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVINTPEVMRVYIGSFWSEPLLISENRKLFELEEQDLFLDLQNLPRNAALRKLNDMVKRARLVRVHAYIMSYLKKEMRGVLRKENKKKQLISNLPEIFRNIQLEHHISAGDFPDFERMQEQLRVHDFSKFPSLKPKMMNELDHMLTYDVAKLMPLVRQEEMEMPEQLVHGGAFDGTSNGPFVEGIVDGTCEAADDDDEWVVTKDKPKYDEIFYNLSPMDGKINGVKAKNWMITTKLPNSVLGRIWKLSDVDKDGMLDDEEFALANHLIEVKLDGHGLPTVLPGYLVPPSKRRQVGSAE
SIO_010081: LOC109938654
subclass of: SO_0000673
so part of: LOC109938654
location: join(2344434..2344840,2346612..2346615,2357742..2357785,2359005..2359033,2361305..2361738,2366905..2367069,2369520..2370059)
location: region:2344434-2370059:1
so has part: feature:2344434-2344840:1:exon
so has part: feature:2346612-2346615:1:exon
so has part: feature:2357742-2357785:1:exon
so has part: feature:2359005-2359033:1:exon
so has part: feature:2361305-2361738:1:exon
so has part: feature:2366905-2367069:1:exon
so has part: feature:2369520-2370059:1:exon

XP_048474099.1
type: Protein
SIO_000068: ncbiprotein

position:2344434:1
position: 2344434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2370059:1
position: 2370059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2344434-2344840:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2346612-2346615:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2357742-2357785:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2359005-2359033:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2361305-2361738:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2366905-2367069:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2369520-2370059:1:exon

nop53
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: nop53
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2381035..2396848
location: region:2381035-2396848:1
so has part: feature:2381035-2396848:1:exon
subclass of: SO_0000010

109926415
type: Gene
SIO_000068: ncbigene

position:2381035:1
position: 2381035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2396848:1
position: 2396848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2381035-2396848:1:exon

nop53
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: nop53
product: NOP53 ribosome biogenesis factor
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 997 long SRA reads, 3 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_048618194.1
SIO_010081: nop53
subclass of: SO_0000673
so part of: nop53
location: join(2381035..2381295,2381592..2381697,2383533..2383617,2385832..2386019,2386934..2387004,2387966..2388061,2390538..2390642,2391433..2391606,2393056..2393231,2394169..2394235,2395831..2395907,2396765..2396848)
location: region:2381035-2396848:1
so has part: feature:2381035-2381295:1:exon
so has part: feature:2381592-2381697:1:exon
so has part: feature:2383533-2383617:1:exon
so has part: feature:2385832-2386019:1:exon
so has part: feature:2386934-2387004:1:exon
so has part: feature:2387966-2388061:1:exon
so has part: feature:2390538-2390642:1:exon
so has part: feature:2391433-2391606:1:exon
so has part: feature:2393056-2393231:1:exon
so has part: feature:2394169-2394235:1:exon
so has part: feature:2395831-2395907:1:exon
so has part: feature:2396765-2396848:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2381035-2381295:1:exon

position:2381295:1
position: 2381295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2381592-2381697:1:exon

position:2381592:1
position: 2381592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2381697:1
position: 2381697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2383533-2383617:1:exon

position:2383533:1
position: 2383533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2383617:1
position: 2383617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2385832-2386019:1:exon

position:2385832:1
position: 2385832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2386019:1
position: 2386019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2386934-2387004:1:exon

position:2386934:1
position: 2386934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2387004:1
position: 2387004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2387966-2388061:1:exon

position:2387966:1
position: 2387966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2388061:1
position: 2388061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2390538-2390642:1:exon

position:2390538:1
position: 2390538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2390642:1
position: 2390642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2391433-2391606:1:exon

position:2391433:1
position: 2391433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2391606:1
position: 2391606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2393056-2393231:1:exon

position:2393056:1
position: 2393056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2393231:1
position: 2393231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2394169-2394235:1:exon

position:2394169:1
position: 2394169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2394235:1
position: 2394235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2395831-2395907:1:exon

position:2395831:1
position: 2395831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2395907:1
position: 2395907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2396765-2396848:1:exon

position:2396765:1
position: 2396765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

nop53
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: nop53
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ribosome biogenesis protein NOP53
translation: MAAAQGPGSFLTLRPDSASPLPRDQQRRRRLNKNKKKNWNKHSDITEVEEFLEDPGGELSDKFLFIFRGLVSEKSDDNLFFVDTGDDVKDLIHNKGKLKPLRVDLILQSDSRVPAPKDILLYQIPNNRKLRRKVEREKRFGIVSRKERLRNARIQKPVVKTKPVSNNSPARDFYDLWSNTGPLDKELEGKDMWFLEQTKKKPLKRPHKLNQKPSQVSAIEVIAPGGSYNPTFESHQALLLEAHEVEVKKLRAEEKINRQVAFPSSEELPTEETVLQELCQGLLVDSDGEEQDKGPKAAEESEDGLVWNAVCCEKKTEKERKKEKLMKKQRHRLKQQKDAQQKQQDLFRLRSIKGEVKELELKLAKRKAKRVEKRKAEANKPRRLGRLKYEDPDLDVKLSDELTGTLRALKPEGSILADRFKSLQKRNLIEPRIRAKFKRKHKLKYVEKRAFREVT
SIO_010081: nop53
subclass of: SO_0000673
so part of: nop53
location: join(2381134..2381295,2381592..2381697,2383533..2383617,2385832..2386019,2386934..2387004,2387966..2388061,2390538..2390642,2391433..2391606,2393056..2393231,2394169..2394235,2395831..2395907,2396765..2396825)
location: region:2381134-2396825:1
so has part: feature:2381134-2381295:1:exon
so has part: feature:2381592-2381697:1:exon
so has part: feature:2383533-2383617:1:exon
so has part: feature:2385832-2386019:1:exon
so has part: feature:2386934-2387004:1:exon
so has part: feature:2387966-2388061:1:exon
so has part: feature:2390538-2390642:1:exon
so has part: feature:2391433-2391606:1:exon
so has part: feature:2393056-2393231:1:exon
so has part: feature:2394169-2394235:1:exon
so has part: feature:2395831-2395907:1:exon
so has part: feature:2396765-2396825:1:exon

XP_048474151.1
type: Protein
SIO_000068: ncbiprotein

position:2381134:1
position: 2381134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2396825:1
position: 2396825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2381134-2381295:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2381592-2381697:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2383533-2383617:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2385832-2386019:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2386934-2387004:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2387966-2388061:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2390538-2390642:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2391433-2391606:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2393056-2393231:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2394169-2394235:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2395831-2395907:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2396765-2396825:1:exon

LOC109923780
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC109923780
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2431837..2455584)
location: region:2431837-2455584:-1
so has part: feature:2431837-2455584:-1:exon
subclass of: SO_0000010

109923780
type: Gene
SIO_000068: ncbigene

position:2431837:-1
position: 2431837
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2455584:-1
position: 2455584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2431837-2455584:-1:exon

LOC109923780
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109923780
product: endothelial PAS domain-containing protein 1-like
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618144.1
SIO_010081: LOC109923780
subclass of: SO_0000673
so part of: LOC109923780
location: complement(join(2431837..2435320,2439425..2439548,2442584..2442692,2443492..2444072,2446823..2446891,2450277..2450527,2452244..2452425,2454306..2454450,2455477..2455584))
location: region:2431837-2455584:-1
so has part: feature:2455477-2455584:-1:exon
so has part: feature:2454306-2454450:-1:exon
so has part: feature:2452244-2452425:-1:exon
so has part: feature:2450277-2450527:-1:exon
so has part: feature:2446823-2446891:-1:exon
so has part: feature:2443492-2444072:-1:exon
so has part: feature:2442584-2442692:-1:exon
so has part: feature:2439425-2439548:-1:exon
so has part: feature:2431837-2435320:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2455477-2455584:-1:exon

position:2455477:-1
position: 2455477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2454306-2454450:-1:exon

position:2454306:-1
position: 2454306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2454450:-1
position: 2454450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2452244-2452425:-1:exon

position:2452244:-1
position: 2452244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2452425:-1
position: 2452425
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2450277-2450527:-1:exon

position:2450277:-1
position: 2450277
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2450527:-1
position: 2450527
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2446823-2446891:-1:exon

position:2446823:-1
position: 2446823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2446891:-1
position: 2446891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2443492-2444072:-1:exon

position:2443492:-1
position: 2443492
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2444072:-1
position: 2444072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2442584-2442692:-1:exon

position:2442584:-1
position: 2442584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2442692:-1
position: 2442692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2439425-2439548:-1:exon

position:2439425:-1
position: 2439425
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2439548:-1
position: 2439548
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2431837-2435320:-1:exon

position:2435320:-1
position: 2435320
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC109923780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109923780
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: endothelial PAS domain-containing protein 1-like
translation: MLGHTSYEFYHSLDTDHMTKTHRILLSKGQVISAQYRFLACGGGYVWLQTQASTIYSRNNQPQCIICINSVLSNVVEDSVTFSLDQTRLQTPDTHLEDSQHLLTQPEENRKKLDELAPVPGDTIIPLDLAGTQGPTDAKAFHFTRRLPENHQATLAPEEFCSPALCKLLSPIFDSPESSRSSTDSETLSKPPERAKEDTAAAEGTVPKPGRCETSGMNIKQPENNLIAIDSKTLQTETNQEPMELDLEMLAPYISMDEDFQLSSFECAEDKDSQVFPDVHPDSHGQSAAATDSDGLSATPSEPRNTGPSNNRSRSSSFHRVRPQKRGDTPHPEGTSAALQRSSSATNLSKIPAPAPSGRPIAFGGPAFTVAVKNVLLALFQPQTTDAEVQIGQTASTEGQETTFATATEGLEPSDLLEAAGLVSDAKHSPSKQRTQGDWEVNKNQEELSPQVLDLCNLKRKHSLLNGSFQDSDLDVASVADIVRVTAKRLKRLENQKAAGDEETQPSVTPMTLIMQLLGKEVPGPPELTRYNCEVNAPLPDRHHLLQGPELLKALDQSS
SIO_010081: LOC109923780
subclass of: SO_0000673
so part of: LOC109923780
location: complement(join(2435175..2435320,2439425..2439548,2442584..2442692,2443492..2444072,2446823..2446891,2450277..2450527,2452244..2452425,2454306..2454450,2455477..2455549))
location: region:2435175-2455549:-1
so has part: feature:2455477-2455549:-1:exon
so has part: feature:2454306-2454450:-1:exon
so has part: feature:2452244-2452425:-1:exon
so has part: feature:2450277-2450527:-1:exon
so has part: feature:2446823-2446891:-1:exon
so has part: feature:2443492-2444072:-1:exon
so has part: feature:2442584-2442692:-1:exon
so has part: feature:2439425-2439548:-1:exon
so has part: feature:2435175-2435320:-1:exon

XP_048474101.1
type: Protein
SIO_000068: ncbiprotein

position:2435175:-1
position: 2435175
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2455549:-1
position: 2455549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2455477-2455549:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2454306-2454450:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2452244-2452425:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2450277-2450527:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2446823-2446891:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2443492-2444072:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2442584-2442692:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2439425-2439548:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2435175-2435320:-1:exon

LOC109911982
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC109911982
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2516209..2545275)
location: region:2516209-2545275:-1
so has part: feature:2516209-2545275:-1:exon
subclass of: SO_0000010

109911982
type: Gene
SIO_000068: ncbigene

position:2516209:-1
position: 2516209
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2545275:-1
position: 2545275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2516209-2545275:-1:exon

LOC109911982
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 259920
gene: LOC109911982
product: protein phosphatase 1 regulatory subunit 14A-like, transcript variant X3
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_007265770.1
SIO_010081: LOC109911982
so part of: LOC109911982
location: complement(join(2516209..2516499,2528605..2528637,2528736..2528816,2545253..2545275))
location: region:2516209-2545275:-1
so has part: feature:2545253-2545275:-1:exon
so has part: feature:2528736-2528816:-1:exon
so has part: feature:2528605-2528637:-1:exon
so has part: feature:2516209-2516499:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2545253-2545275:-1:exon

position:2545253:-1
position: 2545253
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2528736-2528816:-1:exon

position:2528736:-1
position: 2528736
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2528816:-1
position: 2528816
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2528605-2528637:-1:exon

position:2528605:-1
position: 2528605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2528637:-1
position: 2528637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2516209-2516499:-1:exon

position:2516499:-1
position: 2516499
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC109911982
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 259920
gene: LOC109911982
product: protein phosphatase 1 regulatory subunit 14A-like, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_007265769.1
SIO_010081: LOC109911982
so part of: LOC109911982
location: complement(join(2516209..2516499,2528605..2528637,2528736..2528816,2540359..2540406))
location: region:2516209-2540406:-1
so has part: feature:2540359-2540406:-1:exon
so has part: feature:2528736-2528816:-1:exon
so has part: feature:2528605-2528637:-1:exon
so has part: feature:2516209-2516499:-1:exon

position:2540406:-1
position: 2540406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2540359-2540406:-1:exon

position:2540359:-1
position: 2540359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2528736-2528816:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2528605-2528637:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2516209-2516499:-1:exon

LOC109911982
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 259920
gene: LOC109911982
product: protein phosphatase 1 regulatory subunit 14A-like, transcript variant X4
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_007265771.1
SIO_010081: LOC109911982
so part of: LOC109911982
location: complement(join(2516209..2516499,2528605..2528637,2528736..2528816,2540326..2540347))
location: region:2516209-2540347:-1
so has part: feature:2540326-2540347:-1:exon
so has part: feature:2528736-2528816:-1:exon
so has part: feature:2528605-2528637:-1:exon
so has part: feature:2516209-2516499:-1:exon

position:2540347:-1
position: 2540347
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2540326-2540347:-1:exon

position:2540326:-1
position: 2540326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2528736-2528816:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2528605-2528637:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2516209-2516499:-1:exon

LOC109911982
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109911982
product: protein phosphatase 1 regulatory subunit 14A-like, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618145.1
SIO_010081: LOC109911982
subclass of: SO_0000673
so part of: LOC109911982
location: complement(join(2516209..2516499,2528605..2528637,2528736..2528816,2537878..2537916))
location: region:2516209-2537916:-1
so has part: feature:2537878-2537916:-1:exon
so has part: feature:2528736-2528816:-1:exon
so has part: feature:2528605-2528637:-1:exon
so has part: feature:2516209-2516499:-1:exon

position:2537916:-1
position: 2537916
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2537878-2537916:-1:exon

position:2537878:-1
position: 2537878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2528736-2528816:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2528605-2528637:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2516209-2516499:-1:exon

LOC109911982
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109911982
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein phosphatase 1 regulatory subunit 14A-like
translation: MWDSLPQGEHEEEQMPEEVNIDDLLELQTDGERRSRLQIMFRLCRKNTDEFITELLRKLQGLHKVEVQKAGLESPQQH
SIO_010081: LOC109911982
subclass of: SO_0000673
so part of: LOC109911982
location: complement(join(2516410..2516499,2528605..2528637,2528736..2528816,2537878..2537910))
location: region:2516410-2537910:-1
so has part: feature:2537878-2537910:-1:exon
so has part: feature:2528736-2528816:-1:exon
so has part: feature:2528605-2528637:-1:exon
so has part: feature:2516410-2516499:-1:exon

XP_048474102.1
type: Protein
SIO_000068: ncbiprotein

position:2516410:-1
position: 2516410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2537910:-1
position: 2537910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2537878-2537910:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2528736-2528816:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2528605-2528637:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2516410-2516499:-1:exon

LOC125487285
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC125487285
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2607602..2638937
location: region:2607602-2638937:1
so has part: feature:2607602-2638937:1:exon
subclass of: SO_0000010

125487285
type: Gene
SIO_000068: ncbigene

position:2607602:1
position: 2607602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2638937:1
position: 2638937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2607602-2638937:1:exon

LOC125487285
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC125487285
product: kunitz-type protease inhibitor 2-like
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618195.1
SIO_010081: LOC125487285
subclass of: SO_0000673
so part of: LOC125487285
location: join(2607602..2607689,2612223..2612393,2616754..2616807,2618784..2618909,2621817..2621873,2625278..2625448,2626856..2626903,2629839..2630009,2632929..2633000,2636440..2638937)
location: region:2607602-2638937:1
so has part: feature:2607602-2607689:1:exon
so has part: feature:2612223-2612393:1:exon
so has part: feature:2616754-2616807:1:exon
so has part: feature:2618784-2618909:1:exon
so has part: feature:2621817-2621873:1:exon
so has part: feature:2625278-2625448:1:exon
so has part: feature:2626856-2626903:1:exon
so has part: feature:2629839-2630009:1:exon
so has part: feature:2632929-2633000:1:exon
so has part: feature:2636440-2638937:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2607602-2607689:1:exon

position:2607689:1
position: 2607689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2612223-2612393:1:exon

position:2612223:1
position: 2612223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2612393:1
position: 2612393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2616754-2616807:1:exon

position:2616754:1
position: 2616754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2616807:1
position: 2616807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2618784-2618909:1:exon

position:2618784:1
position: 2618784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2618909:1
position: 2618909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2621817-2621873:1:exon

position:2621817:1
position: 2621817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2621873:1
position: 2621873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2625278-2625448:1:exon

position:2625278:1
position: 2625278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2625448:1
position: 2625448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2626856-2626903:1:exon

position:2626856:1
position: 2626856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2626903:1
position: 2626903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2629839-2630009:1:exon

position:2629839:1
position: 2629839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2630009:1
position: 2630009
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2632929-2633000:1:exon

position:2632929:1
position: 2632929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2633000:1
position: 2633000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2636440-2638937:1:exon

position:2636440:1
position: 2636440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125487285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC125487285
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: kunitz-type protease inhibitor 2-like
translation: MGGSKCGRAVTVPHPLSQEDAGSSPTCPRVDCLSPSKTGPCRAWFRRWFYDVSSKTCKVFTYGGCLPNGNNFQSELDCLKHCRGITVPASNSVPVSSRSIMGLKDCSTPCFASQFQCADGCCIPRSLLCDGTTRCLDKSDDSYCQAVRDNYDWLTKKQDPSLQDNERCTAPKKVGRCRASFPRWYYDLESQTCQEFIYGGCKGNRNNFVSEHQCLVACAGLKERLPEPQKHQSKMDDRDFCFAPAVTGKCRASFPRWYYNPGSRACERFTYGGCGGNKNSYTSESACLARCSGKADNSKQDHDGNFDTQHHPEAPHRVPAISMVILLSICVLVLLGGVIYFIVKLTKTDPVVSYQRAPHGEDKENLISTVQNL
SIO_010081: LOC125487285
subclass of: SO_0000673
so part of: LOC125487285
location: join(2607602..2607689,2612223..2612393,2616754..2616807,2618784..2618909,2621817..2621873,2625278..2625448,2626856..2626903,2629839..2630009,2632929..2633000,2636440..2636603)
location: region:2607602-2636603:1
so has part: feature:2607602-2607689:1:exon
so has part: feature:2612223-2612393:1:exon
so has part: feature:2616754-2616807:1:exon
so has part: feature:2618784-2618909:1:exon
so has part: feature:2621817-2621873:1:exon
so has part: feature:2625278-2625448:1:exon
so has part: feature:2626856-2626903:1:exon
so has part: feature:2629839-2630009:1:exon
so has part: feature:2632929-2633000:1:exon
so has part: feature:2636440-2636603:1:exon

XP_048474152.1
type: Protein
SIO_000068: ncbiprotein

position:2636603:1
position: 2636603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2607602-2607689:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2612223-2612393:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2616754-2616807:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2618784-2618909:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2621817-2621873:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2625278-2625448:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2626856-2626903:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2629839-2630009:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2632929-2633000:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2636440-2636603:1:exon

LOC109926145
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC109926145
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2705453..2753041
location: region:2705453-2753041:1
so has part: feature:2705453-2753041:1:exon
subclass of: SO_0000010

109926145
type: Gene
SIO_000068: ncbigene

position:2705453:1
position: 2705453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2753041:1
position: 2753041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2705453-2753041:1:exon

LOC109926145
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109926145
product: pleckstrin homology domain-containing family G member 1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 81% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_048618197.1
SIO_010081: LOC109926145
subclass of: SO_0000673
so part of: LOC109926145
location: join(2705453..2705561,2711084..2711586,2752919..2753041)
location: region:2705453-2753041:1
so has part: feature:2705453-2705561:1:exon
so has part: feature:2711084-2711586:1:exon
so has part: feature:2752919-2753041:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2705453-2705561:1:exon

position:2705561:1
position: 2705561
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2711084-2711586:1:exon

position:2711084:1
position: 2711084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2711586:1
position: 2711586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2752919-2753041:1:exon

position:2752919:1
position: 2752919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109926145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109926145
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pleckstrin homology domain-containing family G member 1-like
translation: MAAAVVDGVSVAPISGSCTSVNTVCSDSDHPVSLSSSTSSASLQDGHSSFGSNGTLVPSTGSFSYPAVLGSDISLDLTPVSHAKAPLGEGDGRPGNMMMEAPRGMDCRGVPWSPPPSATSQLKEPLVKLSHVDRVVKEIIETEQAFVRDLKSIVEEFENLCELRFKFLSRTSEQSSSKNRRTCVGSRQARFQQQK
SIO_010081: LOC109926145
subclass of: SO_0000673
so part of: LOC109926145
location: join(2711122..2711586,2752919..2753041)
location: region:2711122-2753041:1
so has part: feature:2711122-2711586:1:exon
so has part: feature:2752919-2753041:1:exon

XP_048474154.1
type: Protein
SIO_000068: ncbiprotein

position:2711122:1
position: 2711122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2711122-2711586:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2752919-2753041:1:exon

LOC125487277
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC125487277
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2757692..2780669
location: region:2757692-2780669:1
so has part: feature:2757692-2780669:1:exon
subclass of: SO_0000010

125487277
type: Gene
SIO_000068: ncbigene

position:2757692:1
position: 2757692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2780669:1
position: 2780669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2757692-2780669:1:exon

LOC125487277
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC125487277
product: nascent polypeptide-associated complex subunit alpha, muscle-specific form-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_048618146.1
SIO_010081: LOC125487277
subclass of: SO_0000673
so part of: LOC125487277
location: join(2757692..2757790,2758216..2758254,2761871..2761884,2765200..2765478,2765974..2767465,2777497..2780669)
location: region:2757692-2780669:1
so has part: feature:2757692-2757790:1:exon
so has part: feature:2758216-2758254:1:exon
so has part: feature:2761871-2761884:1:exon
so has part: feature:2765200-2765478:1:exon
so has part: feature:2765974-2767465:1:exon
so has part: feature:2777497-2780669:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2757692-2757790:1:exon

position:2757790:1
position: 2757790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2758216-2758254:1:exon

position:2758216:1
position: 2758216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2758254:1
position: 2758254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2761871-2761884:1:exon

position:2761871:1
position: 2761871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2761884:1
position: 2761884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2765200-2765478:1:exon

position:2765200:1
position: 2765200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2765478:1
position: 2765478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2765974-2767465:1:exon

position:2765974:1
position: 2765974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2767465:1
position: 2767465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2777497-2780669:1:exon

position:2777497:1
position: 2777497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125487277
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC125487277
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nascent polypeptide-associated complex subunit alpha, muscle-specific form-like
translation: MDTPLTLRRGRRQSEPSKQIQAVIDQSGTQLKYTGSDDDLLSNMETLSLLGSATTLASSVVELEVGAEAKSGESGSPETPHRPSRDEASLERIVQSATEKQEDAEQYEEGPEFCGIGNIDLEMEQIFANMELLQKKTSEGLGAIVEEPSFQLRTVNGDDSLLDVYEDADVEVSEISLLDMAYVNGTEGCETYNSESSEDNDLQRQRRNVNNLESLGEMDQVGRDSQDVGSFANGRLTCEGQRSLLDHEDHHSSHHDSEETLPGREDGFKVNGCPVAMRSESPVQEEFGEEAPSNGHADRLAKPNAAKKDSVQMENDRLLIEKIKNYYESAEMANDQSHLQRRESISFIPTGVVRDSVLWFNYKTAHESIQEAPSEKVPGSDRPSVSAPGAGSEPRSQSRDGQLQLGSVRVLPEPPDGTDPPLSQRPTEAEPEPEFKSSAEILKVWREMEKAAHFCHKHESWNGCGKALDKNKGPPSSRQPGYSEPLLILEDSDLSPSTEFPGASADEVKQDPTDRKPGLKVGLGGKTGPSDNVTYGPWCVGQGTPLCGDIDGCLFQNSEKIMNKVQLLAKMYSQRISRKKAAMPRRIWELEPEARAEYKQWKRRPALKLTRAREVYQEMESDDEVVALQQSAPYAHLVIQDPIPILYAQENIVQLSISKAKSETSNLQLHGTRESSLSRQGTKSTLQAITSQDSSSPTSPQSPKVTSPESLPLRLSAELPSFVQFSSRPHGSSSPNLPASGGGPSLTTGFGAQSPTSESLGHVPHSPLPARATRPGPPPSQTGPRASSPTSGRSSPVSQGSKEHIPSLSRVRYGKQIPVSDWLDVALDRSPPTGTRPTKTQAPPSQTPGDPRPPSALPCNPHELISNPRLVGGVADAENTLQGGCAAKAGSAESPTGLLGGVSVARSLSCPACGAPHEAVLPKPGVSLACAVSEFCCSLPPWVSLRGRSPSPSAIRQLEQSSKPPRGAAPLARPTHTAQPSPSLGPEAKSPCSLQVRAAPPPCLTHSRGPVCPPSSDRRAVIPGDSVESQPVSLSLQLRSPSPFRCQQRHPPRVLDTAGTKQGEDLPKFSNQGPTSFQLCTATGPSVHSLSPRASPPLGQAVSLPATKRCAPSPPLPISRPPFPRGRVNSLPSLGGPTAYNCDKAEQGPSSDSGLGVCLLLSLPVNSQAPPTVSFCSNRPLRGSREQGSFSDGSNSRPQSPVDRTFPEPGQRLRSPSPPSASQIGSSSPHHSTFPTQADRRIRGRHPSENTELAASPQASSTLCSSAANPELSVSPQPHVAPRRQPPARCETPKDPACSNRAHSDGLPPSAGLLQASPGATTPNSAPISPRRRHSVGVLSPMPFPSPRVRSPVPVMGVSSTSPERPTSRCPSPSPSQTSSRSGSPIPLWVGLQGQSPILPSSSGPLCQSPTVMSAPFSPPTPSSPGRWAHRSVTQQMGNSSCLGIKGQWSGPLGESVGKGCARERLDHEEHPGRQPEVGGFTGDPSSEELVMAIAGPPSVTATGGSPCCQETEREEEEDGETLTRGGSARPPSANPASGQVEWCNIPRPGRSTSEASAGREKGNMKTSYSTTVNLQIGGTGKRATFSRAQVSLTQMFLPAAGQSVRKVSGSSGMTQTT
SIO_010081: LOC125487277
subclass of: SO_0000673
so part of: LOC125487277
location: join(2757748..2757790,2758216..2758254,2761871..2761884,2765200..2765478,2765974..2767465,2777497..2780486)
location: region:2757748-2780486:1
so has part: feature:2757748-2757790:1:exon
so has part: feature:2758216-2758254:1:exon
so has part: feature:2761871-2761884:1:exon
so has part: feature:2765200-2765478:1:exon
so has part: feature:2765974-2767465:1:exon
so has part: feature:2777497-2780486:1:exon

XP_048474103.1
type: Protein
SIO_000068: ncbiprotein

position:2757748:1
position: 2757748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2780486:1
position: 2780486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2757748-2757790:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2758216-2758254:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2761871-2761884:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2765200-2765478:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2765974-2767465:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2777497-2780486:1:exon

xgb
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: xgb
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2784656..2840301
location: region:2784656-2840301:1
so has part: feature:2784656-2840301:1:exon
subclass of: SO_0000010

125487286
type: Gene
SIO_000068: ncbigene

position:2784656:1
position: 2784656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2840301:1
position: 2840301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2784656-2840301:1:exon

xgb
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: xgb
product: x globin
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 88% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_048618198.1
SIO_010081: xgb
subclass of: SO_0000673
so part of: xgb
location: join(2784656..2785124,2788075..2788207,2830736..2830744,2837345..2837425,2839398..2840301)
location: region:2784656-2840301:1
so has part: feature:2784656-2785124:1:exon
so has part: feature:2788075-2788207:1:exon
so has part: feature:2830736-2830744:1:exon
so has part: feature:2837345-2837425:1:exon
so has part: feature:2839398-2840301:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2784656-2785124:1:exon

position:2785124:1
position: 2785124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2788075-2788207:1:exon

position:2788075:1
position: 2788075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2788207:1
position: 2788207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2830736-2830744:1:exon

position:2830736:1
position: 2830736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2830744:1
position: 2830744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2837345-2837425:1:exon

position:2837345:1
position: 2837345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2837425:1
position: 2837425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2839398-2840301:1:exon

position:2839398:1
position: 2839398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

xgb
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: xgb
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: x globin
translation: MGCALSGTGHDPGKAGVDVSGAAPRSEAGGSELVASDSHPPLPLSEQQKDLIQQSWKVLHQDIARVGIIMFIRGEIEFKRSGPDAKPISKKYSLTDDPQQARCESGVTAVTTLGMRMHYGYVGVQFIAVVRPILKEKWTTDVEEAWKGLFEYLTRMMKRGYHDAEQRNNVNQTNYIKRRAPSVQKASQNTV
SIO_010081: xgb
subclass of: SO_0000673
so part of: xgb
location: join(2784907..2785124,2788075..2788207,2830736..2830744,2837345..2837425,2839398..2839532)
location: region:2784907-2839532:1
so has part: feature:2784907-2785124:1:exon
so has part: feature:2788075-2788207:1:exon
so has part: feature:2830736-2830744:1:exon
so has part: feature:2837345-2837425:1:exon
so has part: feature:2839398-2839532:1:exon

XP_048474155.1
type: Protein
SIO_000068: ncbiprotein

position:2784907:1
position: 2784907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2839532:1
position: 2839532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2784907-2785124:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2788075-2788207:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2830736-2830744:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2837345-2837425:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2839398-2839532:1:exon

LOC125487278
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC125487278
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2870362..2885847
location: region:2870362-2885847:1
so has part: feature:2870362-2885847:1:exon
subclass of: SO_0000011

125487278
type: Gene
SIO_000068: ncbigene

position:2870362:1
position: 2870362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2885847:1
position: 2885847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2870362-2885847:1:exon

LOC125487278
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 259920
nc RNA class: lncRNA
gene: LOC125487278
product: uncharacterized LOC125487278, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_007265772.1
SIO_010081: LOC125487278
subclass of: SO_0000673
so part of: LOC125487278
location: join(2870362..2870414,2873239..2873616,2877681..2878012,2885525..2885847)
location: region:2870362-2885847:1
so has part: feature:2870362-2870414:1:exon
so has part: feature:2873239-2873616:1:exon
so has part: feature:2877681-2878012:1:exon
so has part: feature:2885525-2885847:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2870362-2870414:1:exon

position:2870414:1
position: 2870414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2873239-2873616:1:exon

position:2873239:1
position: 2873239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2873616:1
position: 2873616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2877681-2878012:1:exon

position:2877681:1
position: 2877681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2878012:1
position: 2878012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2885525-2885847:1:exon

position:2885525:1
position: 2885525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125487278
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 259920
nc RNA class: lncRNA
gene: LOC125487278
product: uncharacterized LOC125487278, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_007265773.1
SIO_010081: LOC125487278
subclass of: SO_0000673
so part of: LOC125487278
location: join(2870362..2870414,2873239..2873379,2877681..2878012,2885525..2885842)
location: region:2870362-2885842:1
so has part: feature:2870362-2870414:1:exon
so has part: feature:2873239-2873379:1:exon
so has part: feature:2877681-2878012:1:exon
so has part: feature:2885525-2885842:1:exon

position:2885842:1
position: 2885842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2870362-2870414:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2873239-2873379:1:exon

position:2873379:1
position: 2873379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2877681-2878012:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2885525-2885842:1:exon

sae1
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: sae1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2909936..3006853
location: region:2909936-3006853:1
so has part: feature:2909936-3006853:1:exon
subclass of: SO_0000010

109913819
type: Gene
SIO_000068: ncbigene

position:2909936:1
position: 2909936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3006853:1
position: 3006853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2909936-3006853:1:exon

sae1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: sae1
product: SUMO1 activating enzyme subunit 1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_020513366.2
SIO_010081: sae1
subclass of: SO_0000673
so part of: sae1
location: join(2909936..2910155,2914151..2914262,2915410..2915583,2936163..2936305,2936995..2937094,2962944..2963049,3003075..3003219,3004432..3004501,3006493..3006853)
location: region:2909936-3006853:1
so has part: feature:2909936-2910155:1:exon
so has part: feature:2914151-2914262:1:exon
so has part: feature:2915410-2915583:1:exon
so has part: feature:2936163-2936305:1:exon
so has part: feature:2936995-2937094:1:exon
so has part: feature:2962944-2963049:1:exon
so has part: feature:3003075-3003219:1:exon
so has part: feature:3004432-3004501:1:exon
so has part: feature:3006493-3006853:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2909936-2910155:1:exon

position:2910155:1
position: 2910155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2914151-2914262:1:exon

position:2914151:1
position: 2914151
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2914262:1
position: 2914262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2915410-2915583:1:exon

position:2915410:1
position: 2915410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2915583:1
position: 2915583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2936163-2936305:1:exon

position:2936163:1
position: 2936163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2936305:1
position: 2936305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2936995-2937094:1:exon

position:2936995:1
position: 2936995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2937094:1
position: 2937094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2962944-2963049:1:exon

position:2962944:1
position: 2962944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2963049:1
position: 2963049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3003075-3003219:1:exon

position:3003075:1
position: 3003075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3003219:1
position: 3003219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3004432-3004501:1:exon

position:3004432:1
position: 3004432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3004501:1
position: 3004501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3006493-3006853:1:exon

position:3006493:1
position: 3006493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

sae1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: sae1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SUMO-activating enzyme subunit 1
translation: MVEKEEAVISEEEAAQYDRQIRLWGLDAQKRLRGSRVLLVGMKGLGAEVAKNLILAGVKALTLLDHQQATPEDSRSQFLIPTSSLGKNRAEASLERAQNLNPMVEVKVDTENITDKSQEFLAQFDAICLTCCPRDVMVRIDQFCRLHNIKFFAGDVFGYHGYMFSDLGEHEFVEEKQKVVKVGPGEEDGPKAKKVKIDPNETTLIKKTVRFCHLKEALEVDWSSEKTKMCLKRTPSDYFLLQVLLKFRSAKARDPLPEYYEEDSELLLQLRSKVLDSLGVKSDLLTDEFVSSCFSELAPVCAVVGGVLSQEIVKALSQRDLPHNNFFFFDGLNSNGIVDCIGPK
SIO_010081: sae1
subclass of: SO_0000673
so part of: sae1
location: join(2910064..2910155,2914151..2914262,2915410..2915583,2936163..2936305,2936995..2937094,2962944..2963049,3003075..3003219,3004432..3004501,3006493..3006585)
location: region:2910064-3006585:1
so has part: feature:2910064-2910155:1:exon
so has part: feature:2914151-2914262:1:exon
so has part: feature:2915410-2915583:1:exon
so has part: feature:2936163-2936305:1:exon
so has part: feature:2936995-2937094:1:exon
so has part: feature:2962944-2963049:1:exon
so has part: feature:3003075-3003219:1:exon
so has part: feature:3004432-3004501:1:exon
so has part: feature:3006493-3006585:1:exon

XP_020368955.2
type: Protein
SIO_000068: ncbiprotein

position:2910064:1
position: 2910064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3006585:1
position: 3006585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2910064-2910155:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2914151-2914262:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2915410-2915583:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2936163-2936305:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2936995-2937094:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2962944-2963049:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3003075-3003219:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3004432-3004501:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3006493-3006585:1:exon

LOC125487279
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC125487279
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3006955..3066348)
location: region:3006955-3066348:-1
so has part: feature:3006955-3066348:-1:exon
subclass of: SO_0000010

125487279
type: Gene
SIO_000068: ncbigene

position:3006955:-1
position: 3006955
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3066348:-1
position: 3066348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3006955-3066348:-1:exon

LOC125487279
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC125487279
product: uncharacterized LOC125487279, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_048618147.1
SIO_010081: LOC125487279
subclass of: SO_0000673
so part of: LOC125487279
location: complement(join(3006955..3007382,3064480..3064652,3065653..3066348))
location: region:3006955-3066348:-1
so has part: feature:3065653-3066348:-1:exon
so has part: feature:3064480-3064652:-1:exon
so has part: feature:3006955-3007382:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3065653-3066348:-1:exon

position:3065653:-1
position: 3065653
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3064480-3064652:-1:exon

position:3064480:-1
position: 3064480
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3064652:-1
position: 3064652
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3006955-3007382:-1:exon

position:3007382:-1
position: 3007382
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125487279
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC125487279
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC125487279 isoform X1
translation: MAVVVACAFPKQRICKHMKTFQFLSIKGLSQSHCTRYQQLIWRAFCFWIYVMSRSTGRTSLPQLLPLYTHPRGLTGGSRQIQTIRSEEGVVSPLTLRGGNAQQDVGDDDAIIRQIGIQLRQMADQLHTYHMERLMFCQWEPETGEMRDQCGMDRTQELRTGEDWTRRFSRFLTVYFPFSAAIIRTDQLCNYNGIMIIRNSNVRNKTRNCWKSSAGQAASVKRNPS
SIO_010081: LOC125487279
subclass of: SO_0000673
so part of: LOC125487279
location: complement(join(3007104..3007382,3064480..3064652,3065653..3065878))
location: region:3007104-3065878:-1
so has part: feature:3065653-3065878:-1:exon
so has part: feature:3064480-3064652:-1:exon
so has part: feature:3007104-3007382:-1:exon

XP_048474104.1
type: Protein
SIO_000068: ncbiprotein

position:3007104:-1
position: 3007104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3065878:-1
position: 3065878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3065653-3065878:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3064480-3064652:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3007104-3007382:-1:exon

LOC125487279
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC125487279
product: uncharacterized LOC125487279, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618148.1
SIO_010081: LOC125487279
subclass of: SO_0000673
so part of: LOC125487279
location: complement(join(3052915..3055478,3064480..3064652,3065653..3066288))
location: region:3052915-3066288:-1
so has part: feature:3065653-3066288:-1:exon
so has part: feature:3064480-3064652:-1:exon
so has part: feature:3052915-3055478:-1:exon

position:3052915:-1
position: 3052915
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3066288:-1
position: 3066288
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3065653-3066288:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3064480-3064652:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3052915-3055478:-1:exon

position:3055478:-1
position: 3055478
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125487279
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 259920
gene: LOC125487279
product: uncharacterized LOC125487279, transcript variant X3
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_007265774.1
SIO_010081: LOC125487279
so part of: LOC125487279
location: complement(join(3052915..3055478,3064480..3064652,3064803..3065289))
location: region:3052915-3065289:-1
so has part: feature:3064803-3065289:-1:exon
so has part: feature:3064480-3064652:-1:exon
so has part: feature:3052915-3055478:-1:exon

position:3065289:-1
position: 3065289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3064803-3065289:-1:exon

position:3064803:-1
position: 3064803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3064480-3064652:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3052915-3055478:-1:exon

LOC125487279
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC125487279
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC125487279 isoform X2
translation: MAVVVACAFPKQRICKHMKTFQFLSIKGLSQSHCTRYQQLIWRAFCFWIYVMSRSTGRTSLPQLLPLYTHPRGLTGGSRQIQTIRSEEGVVSPLTLRGGNAQQDVGDDDAIIRQIGIQLRQMADQLHTYHMERVEEWDRRRWPVWYWTFLNFFMHTMAIFRMPRWR
SIO_010081: LOC125487279
subclass of: SO_0000673
so part of: LOC125487279
location: complement(join(3055377..3055478,3064480..3064652,3065653..3065878))
location: region:3055377-3065878:-1
so has part: feature:3065653-3065878:-1:exon
so has part: feature:3064480-3064652:-1:exon
so has part: feature:3055377-3055478:-1:exon

XP_048474105.1
type: Protein
SIO_000068: ncbiprotein

position:3055377:-1
position: 3055377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3065653-3065878:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3064480-3064652:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3055377-3055478:-1:exon

ccdc9
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: ccdc9
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3138349..3174855
location: region:3138349-3174855:1
so has part: feature:3138349-3174855:1:exon
subclass of: SO_0000010

109938169
type: Gene
SIO_000068: ncbigene

position:3138349:1
position: 3138349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3174855:1
position: 3174855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3138349-3174855:1:exon

ccdc9
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: ccdc9
product: coiled-coil domain containing 9, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618149.1
SIO_010081: ccdc9
subclass of: SO_0000673
so part of: ccdc9
location: join(3138349..3138465,3139234..3139285,3140702..3140812,3141780..3141923,3142551..3142886,3146971..3147054,3152085..3152266,3153454..3153506,3157999..3158104,3162953..3163022,3166975..3167485,3167926..3168162,3169580..3169651,3174410..3174855)
location: region:3138349-3174855:1
so has part: feature:3138349-3138465:1:exon
so has part: feature:3139234-3139285:1:exon
so has part: feature:3140702-3140812:1:exon
so has part: feature:3141780-3141923:1:exon
so has part: feature:3142551-3142886:1:exon
so has part: feature:3146971-3147054:1:exon
so has part: feature:3152085-3152266:1:exon
so has part: feature:3153454-3153506:1:exon
so has part: feature:3157999-3158104:1:exon
so has part: feature:3162953-3163022:1:exon
so has part: feature:3166975-3167485:1:exon
so has part: feature:3167926-3168162:1:exon
so has part: feature:3169580-3169651:1:exon
so has part: feature:3174410-3174855:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3138349-3138465:1:exon

position:3138465:1
position: 3138465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3139234-3139285:1:exon

position:3139234:1
position: 3139234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3139285:1
position: 3139285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3140702-3140812:1:exon

position:3140702:1
position: 3140702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3140812:1
position: 3140812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3141780-3141923:1:exon

position:3141780:1
position: 3141780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3141923:1
position: 3141923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3142551-3142886:1:exon

position:3142551:1
position: 3142551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3142886:1
position: 3142886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3146971-3147054:1:exon

position:3146971:1
position: 3146971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3147054:1
position: 3147054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3152085-3152266:1:exon

position:3152085:1
position: 3152085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3152266:1
position: 3152266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3153454-3153506:1:exon

position:3153454:1
position: 3153454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3153506:1
position: 3153506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3157999-3158104:1:exon

position:3157999:1
position: 3157999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3158104:1
position: 3158104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:3162953-3163022:1:exon

position:3162953:1
position: 3162953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3163022:1
position: 3163022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:3166975-3167485:1:exon

position:3166975:1
position: 3166975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3167485:1
position: 3167485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:3167926-3168162:1:exon

position:3167926:1
position: 3167926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3168162:1
position: 3168162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:3169580-3169651:1:exon

position:3169580:1
position: 3169580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3169651:1
position: 3169651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:3174410-3174855:1:exon

position:3174410:1
position: 3174410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ccdc9
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: ccdc9
product: coiled-coil domain containing 9, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618150.1
SIO_010081: ccdc9
subclass of: SO_0000673
so part of: ccdc9
location: join(3138378..3138465,3140702..3140812,3141780..3141923,3142551..3142886,3146971..3147054,3152085..3152266,3153454..3153506,3157999..3158104,3162953..3163022,3166975..3167485,3167926..3168162,3169580..3169651,3174410..3174855)
location: region:3138378-3174855:1
so has part: feature:3138378-3138465:1:exon
so has part: feature:3140702-3140812:1:exon
so has part: feature:3141780-3141923:1:exon
so has part: feature:3142551-3142886:1:exon
so has part: feature:3146971-3147054:1:exon
so has part: feature:3152085-3152266:1:exon
so has part: feature:3153454-3153506:1:exon
so has part: feature:3157999-3158104:1:exon
so has part: feature:3162953-3163022:1:exon
so has part: feature:3166975-3167485:1:exon
so has part: feature:3167926-3168162:1:exon
so has part: feature:3169580-3169651:1:exon
so has part: feature:3174410-3174855:1:exon

position:3138378:1
position: 3138378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3138378-3138465:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3140702-3140812:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3141780-3141923:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3142551-3142886:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3146971-3147054:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3152085-3152266:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3153454-3153506:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3157999-3158104:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3162953-3163022:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3166975-3167485:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3167926-3168162:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3169580-3169651:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3174410-3174855:1:exon

ccdc9
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: ccdc9
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: coiled-coil domain-containing protein 9 isoform X1
translation: MMSMTVDPDLKTREEKDAELDRRIEALRKKNKALMKRHQEIEEDRKKAEEDGVSVTNRKPKHEAEHERKWGAKETTMGVSDLSKSPVEKRSMNNKKTVTSPRRSVDPPGRRSGTSGPRQEATDRDRNQQSPGNRADRMTWGDHPNRSPRKISGHESPSGGRPGRGELGGRARRGRAGGGGPDGAGRGLGSASQQERRVKEWEEKRRQNIEKMNEEMEKIAEYERSQMGRWSGSKGSVDMTMSMTGRERAEYVRWKKEREQIDQERLERHRNAMGQWRREWDAEKTESMFKDNPVPTVSAEGRSMRDDRRPPKPPTISDYIPAARSKDPKRGKEKRENKNYSMHDNRWETCEAECEQKQIIEQEKEEELKEKPAQVQSEGKVDVGEPPADEVDDEDEWEDASDDEEEIVGEDLSDNEDELKETKELEENEKKDVAGITEEVAKGAEVVQTPSRSPEVSAKEQQARKSRETPKLHTPPNDVTVQPKESECKPLSPFSLDEYHPVKDWAEEMETTSPRTSLEQNPLQAVNATKEEQKVEVRSGDIPVAAELDLEAGKEQEAVTDQISLQNVSGSNNPADEILKEQEELEIEKTRDTATIVVTAEKELKQPLINQRTGDVLESATRTTQRTDCVEGNEPSSG
SIO_010081: ccdc9
subclass of: SO_0000673
so part of: ccdc9
location: join(3139280..3139285,3140702..3140812,3141780..3141923,3142551..3142886,3146971..3147054,3152085..3152266,3153454..3153506,3157999..3158104,3162953..3163022,3166975..3167485,3167926..3168162,3169580..3169651,3174410..3174414)
location: region:3139280-3174414:1
so has part: feature:3139280-3139285:1:exon
so has part: feature:3140702-3140812:1:exon
so has part: feature:3141780-3141923:1:exon
so has part: feature:3142551-3142886:1:exon
so has part: feature:3146971-3147054:1:exon
so has part: feature:3152085-3152266:1:exon
so has part: feature:3153454-3153506:1:exon
so has part: feature:3157999-3158104:1:exon
so has part: feature:3162953-3163022:1:exon
so has part: feature:3166975-3167485:1:exon
so has part: feature:3167926-3168162:1:exon
so has part: feature:3169580-3169651:1:exon
so has part: feature:3174410-3174414:1:exon

XP_048474106.1
type: Protein
SIO_000068: ncbiprotein

position:3139280:1
position: 3139280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3174414:1
position: 3174414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3139280-3139285:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3140702-3140812:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3141780-3141923:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3142551-3142886:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3146971-3147054:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3152085-3152266:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3153454-3153506:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3157999-3158104:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3162953-3163022:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3166975-3167485:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3167926-3168162:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3169580-3169651:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3174410-3174414:1:exon

ccdc9
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: ccdc9
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: coiled-coil domain-containing protein 9 isoform X2
translation: MTVDPDLKTREEKDAELDRRIEALRKKNKALMKRHQEIEEDRKKAEEDGVSVTNRKPKHEAEHERKWGAKETTMGVSDLSKSPVEKRSMNNKKTVTSPRRSVDPPGRRSGTSGPRQEATDRDRNQQSPGNRADRMTWGDHPNRSPRKISGHESPSGGRPGRGELGGRARRGRAGGGGPDGAGRGLGSASQQERRVKEWEEKRRQNIEKMNEEMEKIAEYERSQMGRWSGSKGSVDMTMSMTGRERAEYVRWKKEREQIDQERLERHRNAMGQWRREWDAEKTESMFKDNPVPTVSAEGRSMRDDRRPPKPPTISDYIPAARSKDPKRGKEKRENKNYSMHDNRWETCEAECEQKQIIEQEKEEELKEKPAQVQSEGKVDVGEPPADEVDDEDEWEDASDDEEEIVGEDLSDNEDELKETKELEENEKKDVAGITEEVAKGAEVVQTPSRSPEVSAKEQQARKSRETPKLHTPPNDVTVQPKESECKPLSPFSLDEYHPVKDWAEEMETTSPRTSLEQNPLQAVNATKEEQKVEVRSGDIPVAAELDLEAGKEQEAVTDQISLQNVSGSNNPADEILKEQEELEIEKTRDTATIVVTAEKELKQPLINQRTGDVLESATRTTQRTDCVEGNEPSSG
SIO_010081: ccdc9
subclass of: SO_0000673
so part of: ccdc9
location: join(3140705..3140812,3141780..3141923,3142551..3142886,3146971..3147054,3152085..3152266,3153454..3153506,3157999..3158104,3162953..3163022,3166975..3167485,3167926..3168162,3169580..3169651,3174410..3174414)
location: region:3140705-3174414:1
so has part: feature:3140705-3140812:1:exon
so has part: feature:3141780-3141923:1:exon
so has part: feature:3142551-3142886:1:exon
so has part: feature:3146971-3147054:1:exon
so has part: feature:3152085-3152266:1:exon
so has part: feature:3153454-3153506:1:exon
so has part: feature:3157999-3158104:1:exon
so has part: feature:3162953-3163022:1:exon
so has part: feature:3166975-3167485:1:exon
so has part: feature:3167926-3168162:1:exon
so has part: feature:3169580-3169651:1:exon
so has part: feature:3174410-3174414:1:exon

XP_048474107.1
type: Protein
SIO_000068: ncbiprotein

position:3140705:1
position: 3140705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3140705-3140812:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3141780-3141923:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3142551-3142886:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3146971-3147054:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3152085-3152266:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3153454-3153506:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3157999-3158104:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3162953-3163022:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3166975-3167485:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3167926-3168162:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3169580-3169651:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3174410-3174414:1:exon

LOC125487280
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC125487280
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3178908..3181204
location: region:3178908-3181204:1
so has part: feature:3178908-3181204:1:exon
subclass of: SO_0000010

125487280
type: Gene
SIO_000068: ncbigene

position:3178908:1
position: 3178908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3181204:1
position: 3181204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3178908-3181204:1:exon

LOC125487280
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC125487280
product: uncharacterized LOC125487280
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_048618152.1
SIO_010081: LOC125487280
subclass of: SO_0000673
so part of: LOC125487280
location: 3178908..3181204
location: region:3178908-3181204:1
so has part: feature:3178908-3181204:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3178908-3181204:1:exon

LOC125487280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC125487280
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC125487280
translation: MKNRASDGIGKQMRGPSFTGDKKAKITAKTQKTWMRLATVFAYLLCVSLTAVVLVIYYTLIWEPVRTKPGPSNNNLTVVNAETGNFSTTHRQRSAFNAVRSNPRGFIIPRFEGSHLRSSGGRARNFVNSPKGSSGMVRAAFAGISSTVSSGSDLMLTTENREHRAVGSILSSANNRIEAVTQNRAFSTMGSDNQETTSSAEAAAGRRAFRTMDNDQGGTSGKETTTENSAFSTLDSDAHEAPNVNSHQESASLADFGNFRTTDSNTGSAAPGISRLQTPQAASQKEAINHPPNEPKRAGNGDAATTESNRLAISPSSVGELGAVSTLLGLNQHVKSDADSKIMEVKMDSKPTTKSSRFSAKSTMESTNAMTLSTDIARNNWHHKVARGKMDGNDDVSSAVHSSSKSKRIEDIPTTANPTNDPGPFNIAPTRVDNSELGYQHSYKDHNLTDKHNVFAKLRFLDMTPKNQERENSIGSHSDRLDWMLTEDPERTVTHTPRLPLVGPSKPAEIWENKELGHTGTTDLEAHHVLQNLNTDKKQPSTTWKQSQVNAEDTYKNTVTNSLPTLPIT
SIO_010081: LOC125487280
subclass of: SO_0000673
so part of: LOC125487280
location: 3179098..3180807
location: region:3179098-3180807:1
so has part: feature:3179098-3180807:1:exon

XP_048474109.1
type: Protein
SIO_000068: ncbiprotein

position:3179098:1
position: 3179098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3180807:1
position: 3180807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3179098-3180807:1:exon

LOC109938171
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC109938171
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3229219..3291081)
location: region:3229219-3291081:-1
so has part: feature:3229219-3291081:-1:exon
subclass of: SO_0000010

109938171
type: Gene
SIO_000068: ncbigene

position:3229219:-1
position: 3229219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3291081:-1
position: 3291081
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3229219-3291081:-1:exon

LOC109938171
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109938171
product: p21 protein (Cdc42/Rac)-activated kinase 4
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618153.1
SIO_010081: LOC109938171
subclass of: SO_0000673
so part of: LOC109938171
location: complement(join(3229219..3231478,3236523..3236657,3237748..3237873,3241292..3241418,3242337..3242470,3246234..3246683,3252022..3252789,3290924..3291081))
location: region:3229219-3291081:-1
so has part: feature:3290924-3291081:-1:exon
so has part: feature:3252022-3252789:-1:exon
so has part: feature:3246234-3246683:-1:exon
so has part: feature:3242337-3242470:-1:exon
so has part: feature:3241292-3241418:-1:exon
so has part: feature:3237748-3237873:-1:exon
so has part: feature:3236523-3236657:-1:exon
so has part: feature:3229219-3231478:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3290924-3291081:-1:exon

position:3290924:-1
position: 3290924
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3252022-3252789:-1:exon

position:3252022:-1
position: 3252022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3252789:-1
position: 3252789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3246234-3246683:-1:exon

position:3246234:-1
position: 3246234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3246683:-1
position: 3246683
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3242337-3242470:-1:exon

position:3242337:-1
position: 3242337
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3242470:-1
position: 3242470
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3241292-3241418:-1:exon

position:3241292:-1
position: 3241292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3241418:-1
position: 3241418
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3237748-3237873:-1:exon

position:3237748:-1
position: 3237748
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3237873:-1
position: 3237873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3236523-3236657:-1:exon

position:3236523:-1
position: 3236523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3236657:-1
position: 3236657
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3229219-3231478:-1:exon

position:3231478:-1
position: 3231478
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC109938171
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109938171
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase PAK 4
translation: MHKNGVHETPPKGTYPAELDRHHEHKGRSERGKPGSRDERDQGRDDRQKNRNAERADSRAHPQQPRGQEPSRTGGSRPNHHNSREARPDHHKHPDSKSKPHDKADGRRDQPGDREGNHVGFSEPTNSQERTSKREKNESSDKRPKSKYTGKNSPQSPRDKRPLSGPNIRPSNAPGGDGAMKTVHQTGRPFNTYPMAETGAGRGTSSQVDHRVGMPHDVRHNGPNPALGHTSKAQHGQYRPGHSEPPHQGLVPHSSDTHLPRVAQPNSQAPYPAQPQGLESRSPQREPQRVSHQQFKAALQMVVDPGDPRTYLENFIKIGEGSTGIVCIATVKSTGQLVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVEMYNSYLVDDELWVVMEFLEGGALTDIVTHTRMNEEQIATVCLSVLKGLAVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKDVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPKLKNGQKVSPLLKGFLDRLLVRDPTQRAVASELLKHPFLSKAGLPSCIVLLMRANRMK
SIO_010081: LOC109938171
subclass of: SO_0000673
so part of: LOC109938171
location: complement(join(3231323..3231478,3236523..3236657,3237748..3237873,3241292..3241418,3242337..3242470,3246234..3246683,3252022..3252642))
location: region:3231323-3252642:-1
so has part: feature:3252022-3252642:-1:exon
so has part: feature:3246234-3246683:-1:exon
so has part: feature:3242337-3242470:-1:exon
so has part: feature:3241292-3241418:-1:exon
so has part: feature:3237748-3237873:-1:exon
so has part: feature:3236523-3236657:-1:exon
so has part: feature:3231323-3231478:-1:exon

XP_048474110.1
type: Protein
SIO_000068: ncbiprotein

position:3231323:-1
position: 3231323
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3252642:-1
position: 3252642
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3252022-3252642:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3246234-3246683:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3242337-3242470:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3241292-3241418:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3237748-3237873:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3236523-3236657:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3231323-3231478:-1:exon

LOC109925669
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC109925669
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3356332..3404894)
location: region:3356332-3404894:-1
so has part: feature:3356332-3404894:-1:exon
subclass of: SO_0000010

109925669
type: Gene
SIO_000068: ncbigene

position:3356332:-1
position: 3356332
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3404894:-1
position: 3404894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3356332-3404894:-1:exon

LOC109925669
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109925669
product: alpha-actinin-1, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618155.1
SIO_010081: LOC109925669
subclass of: SO_0000673
so part of: LOC109925669
location: complement(join(3356332..3358792,3359907..3360065,3361847..3361927,3367721..3367867,3370421..3370600,3373385..3373519,3373818..3374000,3374278..3374418,3375714..3375822,3376096..3376246,3380450..3380597,3382610..3382840,3384239..3384331,3387526..3387611,3394332..3394413,3394631..3394709,3395990..3396077,3398178..3398264,3401855..3401974,3404780..3404894))
location: region:3356332-3404894:-1
so has part: feature:3404780-3404894:-1:exon
so has part: feature:3401855-3401974:-1:exon
so has part: feature:3398178-3398264:-1:exon
so has part: feature:3395990-3396077:-1:exon
so has part: feature:3394631-3394709:-1:exon
so has part: feature:3394332-3394413:-1:exon
so has part: feature:3387526-3387611:-1:exon
so has part: feature:3384239-3384331:-1:exon
so has part: feature:3382610-3382840:-1:exon
so has part: feature:3380450-3380597:-1:exon
so has part: feature:3376096-3376246:-1:exon
so has part: feature:3375714-3375822:-1:exon
so has part: feature:3374278-3374418:-1:exon
so has part: feature:3373818-3374000:-1:exon
so has part: feature:3373385-3373519:-1:exon
so has part: feature:3370421-3370600:-1:exon
so has part: feature:3367721-3367867:-1:exon
so has part: feature:3361847-3361927:-1:exon
so has part: feature:3359907-3360065:-1:exon
so has part: feature:3356332-3358792:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3404780-3404894:-1:exon

position:3404780:-1
position: 3404780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3401855-3401974:-1:exon

position:3401855:-1
position: 3401855
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3401974:-1
position: 3401974
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3398178-3398264:-1:exon

position:3398178:-1
position: 3398178
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3398264:-1
position: 3398264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3395990-3396077:-1:exon

position:3395990:-1
position: 3395990
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3396077:-1
position: 3396077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3394631-3394709:-1:exon

position:3394631:-1
position: 3394631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3394709:-1
position: 3394709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3394332-3394413:-1:exon

position:3394332:-1
position: 3394332
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3394413:-1
position: 3394413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3387526-3387611:-1:exon

position:3387526:-1
position: 3387526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3387611:-1
position: 3387611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3384239-3384331:-1:exon

position:3384239:-1
position: 3384239
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3384331:-1
position: 3384331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3382610-3382840:-1:exon

position:3382610:-1
position: 3382610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3382840:-1
position: 3382840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:3380450-3380597:-1:exon

position:3380450:-1
position: 3380450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3380597:-1
position: 3380597
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:3376096-3376246:-1:exon

position:3376096:-1
position: 3376096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3376246:-1
position: 3376246
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:3375714-3375822:-1:exon

position:3375714:-1
position: 3375714
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3375822:-1
position: 3375822
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:3374278-3374418:-1:exon

position:3374278:-1
position: 3374278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3374418:-1
position: 3374418
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:3373818-3374000:-1:exon

position:3373818:-1
position: 3373818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3374000:-1
position: 3374000
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:3373385-3373519:-1:exon

position:3373385:-1
position: 3373385
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3373519:-1
position: 3373519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:3370421-3370600:-1:exon

position:3370421:-1
position: 3370421
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3370600:-1
position: 3370600
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:3367721-3367867:-1:exon

position:3367721:-1
position: 3367721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3367867:-1
position: 3367867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:3361847-3361927:-1:exon

position:3361847:-1
position: 3361847
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3361927:-1
position: 3361927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:3359907-3360065:-1:exon

position:3359907:-1
position: 3359907
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3360065:-1
position: 3360065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:3356332-3358792:-1:exon

position:3358792:-1
position: 3358792
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC109925669
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109925669
product: alpha-actinin-1, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618154.1
SIO_010081: LOC109925669
subclass of: SO_0000673
so part of: LOC109925669
location: complement(join(3356332..3358792,3359907..3360065,3361847..3361927,3367721..3367867,3370421..3370600,3373385..3373519,3373818..3374000,3374278..3374418,3375714..3375822,3376096..3376246,3380450..3380597,3382610..3382840,3384239..3384331,3387806..3387891,3394332..3394413,3394631..3394709,3395990..3396077,3398178..3398264,3401855..3401974,3404780..3404894))
location: region:3356332-3404894:-1
so has part: feature:3404780-3404894:-1:exon
so has part: feature:3401855-3401974:-1:exon
so has part: feature:3398178-3398264:-1:exon
so has part: feature:3395990-3396077:-1:exon
so has part: feature:3394631-3394709:-1:exon
so has part: feature:3394332-3394413:-1:exon
so has part: feature:3387806-3387891:-1:exon
so has part: feature:3384239-3384331:-1:exon
so has part: feature:3382610-3382840:-1:exon
so has part: feature:3380450-3380597:-1:exon
so has part: feature:3376096-3376246:-1:exon
so has part: feature:3375714-3375822:-1:exon
so has part: feature:3374278-3374418:-1:exon
so has part: feature:3373818-3374000:-1:exon
so has part: feature:3373385-3373519:-1:exon
so has part: feature:3370421-3370600:-1:exon
so has part: feature:3367721-3367867:-1:exon
so has part: feature:3361847-3361927:-1:exon
so has part: feature:3359907-3360065:-1:exon
so has part: feature:3356332-3358792:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3404780-3404894:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3401855-3401974:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3398178-3398264:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3395990-3396077:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3394631-3394709:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3394332-3394413:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3387806-3387891:-1:exon

position:3387806:-1
position: 3387806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3387891:-1
position: 3387891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3384239-3384331:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3382610-3382840:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3380450-3380597:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3376096-3376246:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3375714-3375822:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3374278-3374418:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3373818-3374000:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3373385-3373519:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3370421-3370600:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3367721-3367867:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3361847-3361927:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3359907-3360065:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3356332-3358792:-1:exon

LOC109925669
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109925669
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: alpha-actinin-1 isoform X2
translation: MLLLEVISGERLPKPERGKMRVHKINNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNVQNFHISWKDGLAFNALIHRHRPELIDYDKLRKDDPLTNLNNAFEVAEKYLDIPKMLDAEDIVGTLRPDEKAIMTYVSCYYHAFSGAQKAETAANRICKVLAVNQENEHLMEDYEKLASDLLEWIRQTKPWLENREPEKTMQAMQQKLEDFRDYRRVHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEGKMVSDINNAWQGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKATIHEDWTKDKEAMLTQKDYETATLADIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNDLDYYDSPNVNARCQTICDHWDTLGSLTQSRRDALERTEKLQETIDQLYLEYAKRAAPFNNWMEGAMEDLQDMFIVHTTEEIQGLIAAHEQFKATLPDADKEREAILGIHNEMMKIAQSYNIKLSGVNPYTSITSQSINDKWDKVQQFVPARDQALQAEFNKQQSNEHLREQFANKANVVGPWIQTKMQEIGRISIEMHGTLEDQLNQLKQYESSIINYKPNIEKLEQDHQLIQEALIFDNKHTNYTMEHIRVGWEQLLTTIARTINEIENQILTRDAKGISQDQLNEFRSSFNHFDKDHTGKLGPEEFKACLISLGYDVGNDQQGEAEFARIMSIVAPNNTEEVSFQAFIDFMSRETTDTDTAEQVMASFKILAGDKSYITAEELRRELPPDQAEYCIARMAPYRGPDAVPGALDYMSFSTALYGESDL
SIO_010081: LOC109925669
subclass of: SO_0000673
so part of: LOC109925669
location: complement(join(3358634..3358792,3359907..3360065,3361847..3361927,3367721..3367867,3370421..3370600,3373385..3373519,3373818..3374000,3374278..3374418,3375714..3375822,3376096..3376246,3380450..3380597,3382610..3382840,3384239..3384331,3387526..3387611,3394332..3394413,3394631..3394709,3395990..3396077,3398178..3398264,3401855..3401974,3404780..3404804))
location: region:3358634-3404804:-1
so has part: feature:3404780-3404804:-1:exon
so has part: feature:3401855-3401974:-1:exon
so has part: feature:3398178-3398264:-1:exon
so has part: feature:3395990-3396077:-1:exon
so has part: feature:3394631-3394709:-1:exon
so has part: feature:3394332-3394413:-1:exon
so has part: feature:3387526-3387611:-1:exon
so has part: feature:3384239-3384331:-1:exon
so has part: feature:3382610-3382840:-1:exon
so has part: feature:3380450-3380597:-1:exon
so has part: feature:3376096-3376246:-1:exon
so has part: feature:3375714-3375822:-1:exon
so has part: feature:3374278-3374418:-1:exon
so has part: feature:3373818-3374000:-1:exon
so has part: feature:3373385-3373519:-1:exon
so has part: feature:3370421-3370600:-1:exon
so has part: feature:3367721-3367867:-1:exon
so has part: feature:3361847-3361927:-1:exon
so has part: feature:3359907-3360065:-1:exon
so has part: feature:3358634-3358792:-1:exon

XP_048474112.1
type: Protein
SIO_000068: ncbiprotein

position:3358634:-1
position: 3358634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3404804:-1
position: 3404804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3404780-3404804:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3401855-3401974:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3398178-3398264:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3395990-3396077:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3394631-3394709:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3394332-3394413:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3387526-3387611:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3384239-3384331:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3382610-3382840:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3380450-3380597:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3376096-3376246:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3375714-3375822:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3374278-3374418:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3373818-3374000:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3373385-3373519:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3370421-3370600:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3367721-3367867:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3361847-3361927:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3359907-3360065:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3358634-3358792:-1:exon

LOC109925669
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109925669
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: alpha-actinin-1 isoform X1
translation: MLLLEVISGERLPKPERGKMRVHKINNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNVQNFHISWKDGLAFNALIHRHRPELIDYDKLRKDDPLTNLNNAFEVAEKYLDIPKMLDAEDIVNTARPDEKAIMTYVSCFYHAFSGAQKAETAANRICKVLAVNQENEHLMEDYEKLASDLLEWIRQTKPWLENREPEKTMQAMQQKLEDFRDYRRVHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEGKMVSDINNAWQGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKATIHEDWTKDKEAMLTQKDYETATLADIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNDLDYYDSPNVNARCQTICDHWDTLGSLTQSRRDALERTEKLQETIDQLYLEYAKRAAPFNNWMEGAMEDLQDMFIVHTTEEIQGLIAAHEQFKATLPDADKEREAILGIHNEMMKIAQSYNIKLSGVNPYTSITSQSINDKWDKVQQFVPARDQALQAEFNKQQSNEHLREQFANKANVVGPWIQTKMQEIGRISIEMHGTLEDQLNQLKQYESSIINYKPNIEKLEQDHQLIQEALIFDNKHTNYTMEHIRVGWEQLLTTIARTINEIENQILTRDAKGISQDQLNEFRSSFNHFDKDHTGKLGPEEFKACLISLGYDVGNDQQGEAEFARIMSIVAPNNTEEVSFQAFIDFMSRETTDTDTAEQVMASFKILAGDKSYITAEELRRELPPDQAEYCIARMAPYRGPDAVPGALDYMSFSTALYGESDL
SIO_010081: LOC109925669
subclass of: SO_0000673
so part of: LOC109925669
location: complement(join(3358634..3358792,3359907..3360065,3361847..3361927,3367721..3367867,3370421..3370600,3373385..3373519,3373818..3374000,3374278..3374418,3375714..3375822,3376096..3376246,3380450..3380597,3382610..3382840,3384239..3384331,3387806..3387891,3394332..3394413,3394631..3394709,3395990..3396077,3398178..3398264,3401855..3401974,3404780..3404804))
location: region:3358634-3404804:-1
so has part: feature:3404780-3404804:-1:exon
so has part: feature:3401855-3401974:-1:exon
so has part: feature:3398178-3398264:-1:exon
so has part: feature:3395990-3396077:-1:exon
so has part: feature:3394631-3394709:-1:exon
so has part: feature:3394332-3394413:-1:exon
so has part: feature:3387806-3387891:-1:exon
so has part: feature:3384239-3384331:-1:exon
so has part: feature:3382610-3382840:-1:exon
so has part: feature:3380450-3380597:-1:exon
so has part: feature:3376096-3376246:-1:exon
so has part: feature:3375714-3375822:-1:exon
so has part: feature:3374278-3374418:-1:exon
so has part: feature:3373818-3374000:-1:exon
so has part: feature:3373385-3373519:-1:exon
so has part: feature:3370421-3370600:-1:exon
so has part: feature:3367721-3367867:-1:exon
so has part: feature:3361847-3361927:-1:exon
so has part: feature:3359907-3360065:-1:exon
so has part: feature:3358634-3358792:-1:exon

XP_048474111.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3404780-3404804:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3401855-3401974:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3398178-3398264:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3395990-3396077:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3394631-3394709:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3394332-3394413:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3387806-3387891:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3384239-3384331:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3382610-3382840:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3380450-3380597:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3376096-3376246:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3375714-3375822:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3374278-3374418:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3373818-3374000:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3373385-3373519:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3370421-3370600:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3367721-3367867:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3361847-3361927:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3359907-3360065:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3358634-3358792:-1:exon

LOC109920412
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC109920412
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3497780..3528670)
location: region:3497780-3528670:-1
so has part: feature:3497780-3528670:-1:exon
subclass of: SO_0000010

109920412
type: Gene
SIO_000068: ncbigene

position:3497780:-1
position: 3497780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3528670:-1
position: 3528670
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3497780-3528670:-1:exon

LOC109920412
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109920412
product: calpain-3-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 long SRA reads, 17 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_020520446.2
SIO_010081: LOC109920412
subclass of: SO_0000673
so part of: LOC109920412
location: complement(join(3497780..3499942,3500833..3500891,3508349..3508465,3509240..3509318,3510685..3510753,3512211..3512275,3513401..3513461,3513789..3513866,3514681..3514720,3515032..3515240,3515522..3515694,3516881..3517047,3517686..3517757,3520090..3520175,3521404..3521475,3522723..3522891,3523799..3523932,3524166..3524284,3525583..3525652,3528342..3528670))
location: region:3497780-3528670:-1
so has part: feature:3528342-3528670:-1:exon
so has part: feature:3525583-3525652:-1:exon
so has part: feature:3524166-3524284:-1:exon
so has part: feature:3523799-3523932:-1:exon
so has part: feature:3522723-3522891:-1:exon
so has part: feature:3521404-3521475:-1:exon
so has part: feature:3520090-3520175:-1:exon
so has part: feature:3517686-3517757:-1:exon
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so has part: feature:3513789-3513866:-1:exon
so has part: feature:3513401-3513461:-1:exon
so has part: feature:3512211-3512275:-1:exon
so has part: feature:3510685-3510753:-1:exon
so has part: feature:3509240-3509318:-1:exon
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so has part: feature:3500833-3500891:-1:exon
so has part: feature:3497780-3499942:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3528342-3528670:-1:exon

position:3528342:-1
position: 3528342
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3525583-3525652:-1:exon

position:3525583:-1
position: 3525583
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3525652:-1
position: 3525652
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3524166-3524284:-1:exon

position:3524166:-1
position: 3524166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3524284:-1
position: 3524284
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3523799-3523932:-1:exon

position:3523799:-1
position: 3523799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3523932:-1
position: 3523932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3522723-3522891:-1:exon

position:3522723:-1
position: 3522723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3522891:-1
position: 3522891
reference: sequence
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urn:…
SIO_000300: 6
SIO_000628: feature:3521404-3521475:-1:exon

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position: 3521404
reference: sequence
type: ReverseStrandPosition
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position:3521475:-1
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reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 7
SIO_000628: feature:3520090-3520175:-1:exon

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position: 3520090
reference: sequence
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position:3520175:-1
position: 3520175
reference: sequence
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urn:…
SIO_000300: 8
SIO_000628: feature:3517686-3517757:-1:exon

position:3517686:-1
position: 3517686
reference: sequence
type: ReverseStrandPosition
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position:3517757:-1
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reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3516881-3517047:-1:exon

position:3516881:-1
position: 3516881
reference: sequence
type: ReverseStrandPosition
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position:3517047:-1
position: 3517047
reference: sequence
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type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:3515522-3515694:-1:exon

position:3515522:-1
position: 3515522
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3515694:-1
position: 3515694
reference: sequence
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type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:3515032-3515240:-1:exon

position:3515032:-1
position: 3515032
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3515240:-1
position: 3515240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:3514681-3514720:-1:exon

position:3514681:-1
position: 3514681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3514720:-1
position: 3514720
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 13
SIO_000628: feature:3513789-3513866:-1:exon

position:3513789:-1
position: 3513789
reference: sequence
type: ReverseStrandPosition
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position:3513866:-1
position: 3513866
reference: sequence
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urn:…
SIO_000300: 14
SIO_000628: feature:3513401-3513461:-1:exon

position:3513401:-1
position: 3513401
reference: sequence
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position:3513461:-1
position: 3513461
reference: sequence
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urn:…
SIO_000300: 15
SIO_000628: feature:3512211-3512275:-1:exon

position:3512211:-1
position: 3512211
reference: sequence
type: ReverseStrandPosition
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position:3512275:-1
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reference: sequence
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urn:…
SIO_000300: 16
SIO_000628: feature:3510685-3510753:-1:exon

position:3510685:-1
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reference: sequence
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position:3510753:-1
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urn:…
SIO_000300: 17
SIO_000628: feature:3509240-3509318:-1:exon

position:3509240:-1
position: 3509240
reference: sequence
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position:3509318:-1
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reference: sequence
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urn:…
SIO_000300: 18
SIO_000628: feature:3508349-3508465:-1:exon

position:3508349:-1
position: 3508349
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3508465:-1
position: 3508465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:3500833-3500891:-1:exon

position:3500833:-1
position: 3500833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3500891:-1
position: 3500891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:3497780-3499942:-1:exon

position:3499942:-1
position: 3499942
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC109920412
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109920412
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: calpain-3-like isoform X2
translation: MYRMPWSGGGHTPGFYDSSLVLRRNALLYPSPGTAEIPAPQPFPGPAGLFEDLRFPAANSSLHGPSGVSRYNITITRWMRPREMCANPQFIVDGATRTDICQGALGDCWFLSVIACLSLNKQVMEQVIPPDQGFGEGYTGCFRFKFWQYGQWVEVVVDDRLPTINNKLAFLYSKDNNEFWSPLLEKACAKLKGSYESLYIGYPLEAMVDLTGGAPESFQINEMPKDLWKFLRKLLEKGSIICCAKPGPVGILNEQGIVTGHAYSVTGVDQVQVKTNRIELVRVRNPWGRVEWNGAWSDGSAEWSQVTDTNRRQMVHLEDGEFWMSIEDFKKNFGNVEICHLSLCQLSNPDGKLKPWVQMVYEGRWIRGFSAGGNLYYKDKYYWMNPQFKLTLFEEDDDPDDPEVTCTFLVVLMQKHRRRMRLTGVNFLYIGFDIFKGDPTKAFLTHEDLQEASPVLSVKEHKNSTEVMMRGCLPPGHYVIIPSTANPNEEGEFLLRVFTEKGNIAEPAERNTSSTENPQGLPILAPCPLPSAAESKELFDRICGPDEAISALELQKLLAEILQKAGLNEKWDEFGLDACKSLISLTDRRGFGKMGFTEFSNLWSKICQWTRVFNQFDKDGSGTMNSQEMFSALQAAGFQVDEFLMQLIGLRYTDPDLTFSYVTFICCLTKLDTMIRSFKTMDKFGTGVINITYKEWLQMTMYS
SIO_010081: LOC109920412
subclass of: SO_0000673
so part of: LOC109920412
location: complement(join(3499916..3499942,3500833..3500891,3508349..3508465,3509240..3509318,3510685..3510753,3512211..3512275,3513401..3513461,3513789..3513866,3514681..3514720,3515032..3515240,3515522..3515694,3516881..3517047,3517686..3517757,3520090..3520175,3521404..3521475,3522723..3522891,3523799..3523932,3524166..3524284,3525583..3525652,3528342..3528587))
location: region:3499916-3528587:-1
so has part: feature:3528342-3528587:-1:exon
so has part: feature:3525583-3525652:-1:exon
so has part: feature:3524166-3524284:-1:exon
so has part: feature:3523799-3523932:-1:exon
so has part: feature:3522723-3522891:-1:exon
so has part: feature:3521404-3521475:-1:exon
so has part: feature:3520090-3520175:-1:exon
so has part: feature:3517686-3517757:-1:exon
so has part: feature:3516881-3517047:-1:exon
so has part: feature:3515522-3515694:-1:exon
so has part: feature:3515032-3515240:-1:exon
so has part: feature:3514681-3514720:-1:exon
so has part: feature:3513789-3513866:-1:exon
so has part: feature:3513401-3513461:-1:exon
so has part: feature:3512211-3512275:-1:exon
so has part: feature:3510685-3510753:-1:exon
so has part: feature:3509240-3509318:-1:exon
so has part: feature:3508349-3508465:-1:exon
so has part: feature:3500833-3500891:-1:exon
so has part: feature:3499916-3499942:-1:exon

XP_020376035.2
type: Protein
SIO_000068: ncbiprotein

position:3499916:-1
position: 3499916
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3528587:-1
position: 3528587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3528342-3528587:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3525583-3525652:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3524166-3524284:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3523799-3523932:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3522723-3522891:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3521404-3521475:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3520090-3520175:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3517686-3517757:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3516881-3517047:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3515522-3515694:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3515032-3515240:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3514681-3514720:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3513789-3513866:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3513401-3513461:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3512211-3512275:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3510685-3510753:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3509240-3509318:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3508349-3508465:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3500833-3500891:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3499916-3499942:-1:exon

LOC109920412
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109920412
product: calpain-3-like, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_048618363.1
SIO_010081: LOC109920412
subclass of: SO_0000673
so part of: LOC109920412
location: complement(join(3505287..3507665,3508349..3508465,3509240..3509318,3510685..3510753,3512211..3512275,3513401..3513461,3513789..3513866,3514681..3514720,3515032..3515240,3515522..3515694,3516881..3517047,3517686..3517757,3520090..3520175,3521404..3521475,3522723..3522891,3523799..3523932,3528342..3528670))
location: region:3505287-3528670:-1
so has part: feature:3528342-3528670:-1:exon
so has part: feature:3523799-3523932:-1:exon
so has part: feature:3522723-3522891:-1:exon
so has part: feature:3521404-3521475:-1:exon
so has part: feature:3520090-3520175:-1:exon
so has part: feature:3517686-3517757:-1:exon
so has part: feature:3516881-3517047:-1:exon
so has part: feature:3515522-3515694:-1:exon
so has part: feature:3515032-3515240:-1:exon
so has part: feature:3514681-3514720:-1:exon
so has part: feature:3513789-3513866:-1:exon
so has part: feature:3513401-3513461:-1:exon
so has part: feature:3512211-3512275:-1:exon
so has part: feature:3510685-3510753:-1:exon
so has part: feature:3509240-3509318:-1:exon
so has part: feature:3508349-3508465:-1:exon
so has part: feature:3505287-3507665:-1:exon

position:3505287:-1
position: 3505287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3528342-3528670:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3523799-3523932:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3522723-3522891:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3521404-3521475:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3520090-3520175:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3517686-3517757:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3516881-3517047:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3515522-3515694:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3515032-3515240:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3514681-3514720:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3513789-3513866:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3513401-3513461:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3512211-3512275:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3510685-3510753:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3509240-3509318:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3508349-3508465:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3505287-3507665:-1:exon

position:3507665:-1
position: 3507665
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC109920412
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109920412
product: calpain-3-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_048618361.1
SIO_010081: LOC109920412
subclass of: SO_0000673
so part of: LOC109920412
location: complement(join(3505287..3507665,3508349..3508465,3509240..3509318,3510685..3510753,3512211..3512275,3513401..3513461,3513789..3513866,3514681..3514720,3515032..3515240,3515522..3515694,3516881..3517047,3517686..3517757,3520090..3520175,3521404..3521475,3522723..3522891,3523799..3523932,3524166..3524284,3525583..3525652,3528342..3528670))
location: region:3505287-3528670:-1
so has part: feature:3528342-3528670:-1:exon
so has part: feature:3525583-3525652:-1:exon
so has part: feature:3524166-3524284:-1:exon
so has part: feature:3523799-3523932:-1:exon
so has part: feature:3522723-3522891:-1:exon
so has part: feature:3521404-3521475:-1:exon
so has part: feature:3520090-3520175:-1:exon
so has part: feature:3517686-3517757:-1:exon
so has part: feature:3516881-3517047:-1:exon
so has part: feature:3515522-3515694:-1:exon
so has part: feature:3515032-3515240:-1:exon
so has part: feature:3514681-3514720:-1:exon
so has part: feature:3513789-3513866:-1:exon
so has part: feature:3513401-3513461:-1:exon
so has part: feature:3512211-3512275:-1:exon
so has part: feature:3510685-3510753:-1:exon
so has part: feature:3509240-3509318:-1:exon
so has part: feature:3508349-3508465:-1:exon
so has part: feature:3505287-3507665:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3528342-3528670:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3525583-3525652:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3524166-3524284:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3523799-3523932:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3522723-3522891:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3521404-3521475:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3520090-3520175:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3517686-3517757:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3516881-3517047:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3515522-3515694:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3515032-3515240:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3514681-3514720:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3513789-3513866:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3513401-3513461:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3512211-3512275:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3510685-3510753:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3509240-3509318:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3508349-3508465:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3505287-3507665:-1:exon

LOC109920412
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109920412
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: calpain-3-like isoform X3
translation: MYRMPWSGGGHTPGFYDSSLVLRRNALLYPSPGTAEIPAPQPFPGPAGLFEDLRFPAANSSLHGPSGVSRYNITITRWMRPRFWQYGQWVEVVVDDRLPTINNKLAFLYSKDNNEFWSPLLEKACAKLKGSYESLYIGYPLEAMVDLTGGAPESFQINEMPKDLWKFLRKLLEKGSIICCAKPGPVGILNEQGIVTGHAYSVTGVDQVQVKTNRIELVRVRNPWGRVEWNGAWSDGSAEWSQVTDTNRRQMVHLEDGEFWMSIEDFKKNFGNVEICHLSLCQLSNPDGKLKPWVQMVYEGRWIRGFSAGGNLYYKDKYYWMNPQFKLTLFEEDDDPDDPEVTCTFLVVLMQKHRRRMRLTGVNFLYIGFDIFKGDPTKAFLTHEDLQEASPVLSVKEHKNSTEVMMRGCLPPGHYVIIPSTANPNEEGEFLLRVFTEKGNIAEPAERNTSSTENPQGLPILAPCPLPSAAESKELFDRICGPDEAISALELQKLLAEILQKAGLNEKWDEFGLDACKSLISLTDRRGFGKMGFTEFSNLWSKICQWTRVFNQFDKDGSGTMNSQEMFSALQAAGFQVDEFLMQLIGLRYTDPDLTFSYVTFICCLTKLDTMIQLGSWQQWHWQWQASPARTRGGRHVGPARTRGGRHVGPARTRGGR
SIO_010081: LOC109920412
subclass of: SO_0000673
so part of: LOC109920412
location: complement(join(3507529..3507665,3508349..3508465,3509240..3509318,3510685..3510753,3512211..3512275,3513401..3513461,3513789..3513866,3514681..3514720,3515032..3515240,3515522..3515694,3516881..3517047,3517686..3517757,3520090..3520175,3521404..3521475,3522723..3522891,3523799..3523932,3528342..3528587))
location: region:3507529-3528587:-1
so has part: feature:3528342-3528587:-1:exon
so has part: feature:3523799-3523932:-1:exon
so has part: feature:3522723-3522891:-1:exon
so has part: feature:3521404-3521475:-1:exon
so has part: feature:3520090-3520175:-1:exon
so has part: feature:3517686-3517757:-1:exon
so has part: feature:3516881-3517047:-1:exon
so has part: feature:3515522-3515694:-1:exon
so has part: feature:3515032-3515240:-1:exon
so has part: feature:3514681-3514720:-1:exon
so has part: feature:3513789-3513866:-1:exon
so has part: feature:3513401-3513461:-1:exon
so has part: feature:3512211-3512275:-1:exon
so has part: feature:3510685-3510753:-1:exon
so has part: feature:3509240-3509318:-1:exon
so has part: feature:3508349-3508465:-1:exon
so has part: feature:3507529-3507665:-1:exon

XP_048474320.1
type: Protein
SIO_000068: ncbiprotein

position:3507529:-1
position: 3507529
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3528342-3528587:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3523799-3523932:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3522723-3522891:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3521404-3521475:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3520090-3520175:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3517686-3517757:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3516881-3517047:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3515522-3515694:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3515032-3515240:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3514681-3514720:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3513789-3513866:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3513401-3513461:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3512211-3512275:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3510685-3510753:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3509240-3509318:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3508349-3508465:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3507529-3507665:-1:exon

LOC109920412
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109920412
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: calpain-3-like isoform X1
translation: MYRMPWSGGGHTPGFYDSSLVLRRNALLYPSPGTAEIPAPQPFPGPAGLFEDLRFPAANSSLHGPSGVSRYNITITRWMRPREMCANPQFIVDGATRTDICQGALGDCWFLSVIACLSLNKQVMEQVIPPDQGFGEGYTGCFRFKFWQYGQWVEVVVDDRLPTINNKLAFLYSKDNNEFWSPLLEKACAKLKGSYESLYIGYPLEAMVDLTGGAPESFQINEMPKDLWKFLRKLLEKGSIICCAKPGPVGILNEQGIVTGHAYSVTGVDQVQVKTNRIELVRVRNPWGRVEWNGAWSDGSAEWSQVTDTNRRQMVHLEDGEFWMSIEDFKKNFGNVEICHLSLCQLSNPDGKLKPWVQMVYEGRWIRGFSAGGNLYYKDKYYWMNPQFKLTLFEEDDDPDDPEVTCTFLVVLMQKHRRRMRLTGVNFLYIGFDIFKGDPTKAFLTHEDLQEASPVLSVKEHKNSTEVMMRGCLPPGHYVIIPSTANPNEEGEFLLRVFTEKGNIAEPAERNTSSTENPQGLPILAPCPLPSAAESKELFDRICGPDEAISALELQKLLAEILQKAGLNEKWDEFGLDACKSLISLTDRRGFGKMGFTEFSNLWSKICQWTRVFNQFDKDGSGTMNSQEMFSALQAAGFQVDEFLMQLIGLRYTDPDLTFSYVTFICCLTKLDTMIQLGSWQQWHWQWQASPARTRGGRHVGPARTRGGRHVGPARTRGGR
SIO_010081: LOC109920412
subclass of: SO_0000673
so part of: LOC109920412
location: complement(join(3507529..3507665,3508349..3508465,3509240..3509318,3510685..3510753,3512211..3512275,3513401..3513461,3513789..3513866,3514681..3514720,3515032..3515240,3515522..3515694,3516881..3517047,3517686..3517757,3520090..3520175,3521404..3521475,3522723..3522891,3523799..3523932,3524166..3524284,3525583..3525652,3528342..3528587))
location: region:3507529-3528587:-1
so has part: feature:3528342-3528587:-1:exon
so has part: feature:3525583-3525652:-1:exon
so has part: feature:3524166-3524284:-1:exon
so has part: feature:3523799-3523932:-1:exon
so has part: feature:3522723-3522891:-1:exon
so has part: feature:3521404-3521475:-1:exon
so has part: feature:3520090-3520175:-1:exon
so has part: feature:3517686-3517757:-1:exon
so has part: feature:3516881-3517047:-1:exon
so has part: feature:3515522-3515694:-1:exon
so has part: feature:3515032-3515240:-1:exon
so has part: feature:3514681-3514720:-1:exon
so has part: feature:3513789-3513866:-1:exon
so has part: feature:3513401-3513461:-1:exon
so has part: feature:3512211-3512275:-1:exon
so has part: feature:3510685-3510753:-1:exon
so has part: feature:3509240-3509318:-1:exon
so has part: feature:3508349-3508465:-1:exon
so has part: feature:3507529-3507665:-1:exon

XP_048474318.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3528342-3528587:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3525583-3525652:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3524166-3524284:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3523799-3523932:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3522723-3522891:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3521404-3521475:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3520090-3520175:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3517686-3517757:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3516881-3517047:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3515522-3515694:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3515032-3515240:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3514681-3514720:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3513789-3513866:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3513401-3513461:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3512211-3512275:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3510685-3510753:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3509240-3509318:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3508349-3508465:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3507529-3507665:-1:exon

LOC109920412
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 259920
gene: LOC109920412
product: calpain-3-like, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XR_007265797.1
SIO_010081: LOC109920412
so part of: LOC109920412
location: complement(join(3508359..3508465,3509240..3509318,3513401..3513461,3513789..3513866,3514681..3514720,3515032..3515240,3515522..3515694,3516881..3517047,3517686..3517757,3520090..3520175,3521404..3521475,3522723..3522891,3523799..3523932,3524166..3524284,3525583..3525652,3528342..3528670))
location: region:3508359-3528670:-1
so has part: feature:3528342-3528670:-1:exon
so has part: feature:3525583-3525652:-1:exon
so has part: feature:3524166-3524284:-1:exon
so has part: feature:3523799-3523932:-1:exon
so has part: feature:3522723-3522891:-1:exon
so has part: feature:3521404-3521475:-1:exon
so has part: feature:3520090-3520175:-1:exon
so has part: feature:3517686-3517757:-1:exon
so has part: feature:3516881-3517047:-1:exon
so has part: feature:3515522-3515694:-1:exon
so has part: feature:3515032-3515240:-1:exon
so has part: feature:3514681-3514720:-1:exon
so has part: feature:3513789-3513866:-1:exon
so has part: feature:3513401-3513461:-1:exon
so has part: feature:3509240-3509318:-1:exon
so has part: feature:3508359-3508465:-1:exon

position:3508359:-1
position: 3508359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3528342-3528670:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3525583-3525652:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3524166-3524284:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3523799-3523932:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3522723-3522891:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3521404-3521475:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3520090-3520175:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3517686-3517757:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3516881-3517047:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3515522-3515694:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3515032-3515240:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3514681-3514720:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3513789-3513866:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3513401-3513461:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3509240-3509318:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3508359-3508465:-1:exon

eif3k
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: eif3k
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3534480..3541892)
location: region:3534480-3541892:-1
so has part: feature:3534480-3541892:-1:exon
subclass of: SO_0000010

109920411
type: Gene
SIO_000068: ncbigene

position:3534480:-1
position: 3534480
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3541892:-1
position: 3541892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3534480-3541892:-1:exon

eif3k
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: eif3k
product: eukaryotic translation initiation factor 3, subunit K
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1067 long SRA reads, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XM_048618431.1
SIO_010081: eif3k
subclass of: SO_0000673
so part of: eif3k
location: complement(join(3534480..3534649,3535293..3535418,3538287..3538364,3538688..3538754,3539428..3539502,3540913..3541033,3541790..3541892))
location: region:3534480-3541892:-1
so has part: feature:3541790-3541892:-1:exon
so has part: feature:3540913-3541033:-1:exon
so has part: feature:3539428-3539502:-1:exon
so has part: feature:3538688-3538754:-1:exon
so has part: feature:3538287-3538364:-1:exon
so has part: feature:3535293-3535418:-1:exon
so has part: feature:3534480-3534649:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3541790-3541892:-1:exon

position:3541790:-1
position: 3541790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3540913-3541033:-1:exon

position:3540913:-1
position: 3540913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3541033:-1
position: 3541033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3539428-3539502:-1:exon

position:3539428:-1
position: 3539428
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3539502:-1
position: 3539502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3538688-3538754:-1:exon

position:3538688:-1
position: 3538688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3538754:-1
position: 3538754
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3538287-3538364:-1:exon

position:3538287:-1
position: 3538287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3538364:-1
position: 3538364
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3535293-3535418:-1:exon

position:3535293:-1
position: 3535293
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3535418:-1
position: 3535418
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3534480-3534649:-1:exon

position:3534649:-1
position: 3534649
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

eif3k
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: eif3k
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: eukaryotic translation initiation factor 3 subunit K
translation: MIDQAHQEERPIQQILNLGDLLETCHFQDFWRNLEENAELIDGITSFEDSVRKFICHVVGITYQTIEKWLLAEMLGDLTDMQLQVWMSKYGWVEAEPDKIFICNQEESIKPKNIVEKIDFDSVASIMASSQ
SIO_010081: eif3k
subclass of: SO_0000673
so part of: eif3k
location: complement(join(3534618..3534649,3535293..3535418,3538287..3538364,3538688..3538754,3539428..3539502,3540913..3540930))
location: region:3534618-3540930:-1
so has part: feature:3540913-3540930:-1:exon
so has part: feature:3539428-3539502:-1:exon
so has part: feature:3538688-3538754:-1:exon
so has part: feature:3538287-3538364:-1:exon
so has part: feature:3535293-3535418:-1:exon
so has part: feature:3534618-3534649:-1:exon

XP_048474388.1
type: Protein
SIO_000068: ncbiprotein

position:3534618:-1
position: 3534618
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3540930:-1
position: 3540930
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3540913-3540930:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3539428-3539502:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3538688-3538754:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3538287-3538364:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3535293-3535418:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3534618-3534649:-1:exon

LOC125487322
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC125487322
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 3554162..3554288
location: region:3554162-3554288:1
so has part: feature:3554162-3554288:1:exon
subclass of: SO_0000623

125487322
type: Gene
SIO_000068: ncbigene

position:3554162:1
position: 3554162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3554288:1
position: 3554288
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3554162-3554288:1:exon

LOC125487322
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 259920
nc RNA class: snRNA
gene: LOC125487322
product: U6atac minor spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00619
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_007265812.1
SIO_010081: LOC125487322
subclass of: SO_0000673
so part of: LOC125487322
location: 3554162..3554288
location: region:3554162-3554288:1
so has part: feature:3554162-3554288:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3554162-3554288:1:exon

clip3
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: clip3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3559128..3629941
location: region:3559128-3629941:1
so has part: feature:3559128-3629941:1:exon
subclass of: SO_0000010

109917553
type: Gene
SIO_000068: ncbigene

position:3559128:1
position: 3559128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3629941:1
position: 3629941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3559128-3629941:1:exon

clip3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: clip3
product: CAP-GLY domain containing linker protein 3, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618375.1
SIO_010081: clip3
subclass of: SO_0000673
so part of: clip3
location: join(3559128..3559400,3573482..3573647,3574786..3574925,3595611..3595704,3597181..3597342,3598595..3598713,3600439..3600675,3602308..3602443,3603542..3603670,3606304..3606438,3608633..3608756,3609203..3609267,3609895..3609967,3627959..3629941)
location: region:3559128-3629941:1
so has part: feature:3559128-3559400:1:exon
so has part: feature:3573482-3573647:1:exon
so has part: feature:3574786-3574925:1:exon
so has part: feature:3595611-3595704:1:exon
so has part: feature:3597181-3597342:1:exon
so has part: feature:3598595-3598713:1:exon
so has part: feature:3600439-3600675:1:exon
so has part: feature:3602308-3602443:1:exon
so has part: feature:3603542-3603670:1:exon
so has part: feature:3606304-3606438:1:exon
so has part: feature:3608633-3608756:1:exon
so has part: feature:3609203-3609267:1:exon
so has part: feature:3609895-3609967:1:exon
so has part: feature:3627959-3629941:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3559128-3559400:1:exon

position:3559400:1
position: 3559400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3573482-3573647:1:exon

position:3573482:1
position: 3573482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3573647:1
position: 3573647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3574786-3574925:1:exon

position:3574786:1
position: 3574786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3574925:1
position: 3574925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3595611-3595704:1:exon

position:3595611:1
position: 3595611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3595704:1
position: 3595704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3597181-3597342:1:exon

position:3597181:1
position: 3597181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3597342:1
position: 3597342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3598595-3598713:1:exon

position:3598595:1
position: 3598595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3598713:1
position: 3598713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3600439-3600675:1:exon

position:3600439:1
position: 3600439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3600675:1
position: 3600675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3602308-3602443:1:exon

position:3602308:1
position: 3602308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3602443:1
position: 3602443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3603542-3603670:1:exon

position:3603542:1
position: 3603542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3603670:1
position: 3603670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:3606304-3606438:1:exon

position:3606304:1
position: 3606304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3606438:1
position: 3606438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:3608633-3608756:1:exon

position:3608633:1
position: 3608633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3608756:1
position: 3608756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:3609203-3609267:1:exon

position:3609203:1
position: 3609203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3609267:1
position: 3609267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:3609895-3609967:1:exon

position:3609895:1
position: 3609895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3609967:1
position: 3609967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:3627959-3629941:1:exon

position:3627959:1
position: 3627959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

clip3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: clip3
product: CAP-GLY domain containing linker protein 3, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618376.1
SIO_010081: clip3
subclass of: SO_0000673
so part of: clip3
location: join(3559128..3559400,3573482..3573647,3574786..3574925,3595611..3595704,3597181..3597342,3598595..3598713,3600439..3600675,3602308..3602443,3603542..3603670,3606304..3606438,3608633..3608756,3609203..3609267,3609895..3609967,3619588..3620215)
location: region:3559128-3620215:1
so has part: feature:3559128-3559400:1:exon
so has part: feature:3573482-3573647:1:exon
so has part: feature:3574786-3574925:1:exon
so has part: feature:3595611-3595704:1:exon
so has part: feature:3597181-3597342:1:exon
so has part: feature:3598595-3598713:1:exon
so has part: feature:3600439-3600675:1:exon
so has part: feature:3602308-3602443:1:exon
so has part: feature:3603542-3603670:1:exon
so has part: feature:3606304-3606438:1:exon
so has part: feature:3608633-3608756:1:exon
so has part: feature:3609203-3609267:1:exon
so has part: feature:3609895-3609967:1:exon
so has part: feature:3619588-3620215:1:exon

position:3620215:1
position: 3620215
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3559128-3559400:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3573482-3573647:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3574786-3574925:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3595611-3595704:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3597181-3597342:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3598595-3598713:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3600439-3600675:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3602308-3602443:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3603542-3603670:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3606304-3606438:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3608633-3608756:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3609203-3609267:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3609895-3609967:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3619588-3620215:1:exon

position:3619588:1
position: 3619588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

clip3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: clip3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: CAP-Gly domain-containing linker protein 3 isoform X1
translation: MTKENVMDVASEEEHKEPQEHQPAEFQSPVLERRKKPVIHPSAPAPLPKDYAFTFFDPNDPACQEILFDPQTTIAELFAIIRQWVPQVQHRIDVIGNEILKRGCHVNDRDGLTDMTLLHYACKAGAHGVGDPVAAVRLCNQLISLGADVGLRSRWTNMNALHYAAYFDVPEIARILLKAHKSKVLNSTCSDFNHGTALHIAASNLCLGAVKCLLEHGANPAVRNRKGQVPADVVPDPMDMTLDKAEAAMVAKELKQLLLDAVPLSCNLPKVTLPNYDNIPGNLMLTSLGLKLGDRVVVDTDKVGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGISYFICPPKHGYFSPVSKISKVLDQTPSSVTSTPKTPRMDFSRMTGKMKKDKKALRRKSLSVGSLDREGAKIEIGDQVLVAGQKPGIIRYYGKTDFAPGYWYGIELDKATGKHDGSVFGVRYYTCSPKYGVFAPPSRVQRIAGPKGPPGDGTIGKKIHQVTMTQPKRNLAAVRTPKDIASESSISRNRWVIGGYIKLTAFGKSERANCHPRGEPNFSCSEDKSTI
SIO_010081: clip3
subclass of: SO_0000673
so part of: clip3
location: join(3573494..3573647,3574786..3574925,3595611..3595704,3597181..3597342,3598595..3598713,3600439..3600675,3602308..3602443,3603542..3603670,3606304..3606438,3608633..3608756,3609203..3609267,3609895..3609967,3627959..3628079)
location: region:3573494-3628079:1
so has part: feature:3573494-3573647:1:exon
so has part: feature:3574786-3574925:1:exon
so has part: feature:3595611-3595704:1:exon
so has part: feature:3597181-3597342:1:exon
so has part: feature:3598595-3598713:1:exon
so has part: feature:3600439-3600675:1:exon
so has part: feature:3602308-3602443:1:exon
so has part: feature:3603542-3603670:1:exon
so has part: feature:3606304-3606438:1:exon
so has part: feature:3608633-3608756:1:exon
so has part: feature:3609203-3609267:1:exon
so has part: feature:3609895-3609967:1:exon
so has part: feature:3627959-3628079:1:exon

XP_048474332.1
type: Protein
SIO_000068: ncbiprotein

position:3573494:1
position: 3573494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3628079:1
position: 3628079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3573494-3573647:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3574786-3574925:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3595611-3595704:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3597181-3597342:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3598595-3598713:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3600439-3600675:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3602308-3602443:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3603542-3603670:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3606304-3606438:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3608633-3608756:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3609203-3609267:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3609895-3609967:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3627959-3628079:1:exon

clip3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: clip3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: CAP-Gly domain-containing linker protein 3 isoform X2
translation: MTKENVMDVASEEEHKEPQEHQPAEFQSPVLERRKKPVIHPSAPAPLPKDYAFTFFDPNDPACQEILFDPQTTIAELFAIIRQWVPQVQHRIDVIGNEILKRGCHVNDRDGLTDMTLLHYACKAGAHGVGDPVAAVRLCNQLISLGADVGLRSRWTNMNALHYAAYFDVPEIARILLKAHKSKVLNSTCSDFNHGTALHIAASNLCLGAVKCLLEHGANPAVRNRKGQVPADVVPDPMDMTLDKAEAAMVAKELKQLLLDAVPLSCNLPKVTLPNYDNIPGNLMLTSLGLKLGDRVVVDTDKVGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGISYFICPPKHGYFSPVSKISKVLDQTPSSVTSTPKTPRMDFSRMTGKMKKDKKALRRKSLSVGSLDREGAKIEIGDQVLVAGQKPGIIRYYGKTDFAPGYWYGIELDKATGKHDGSVFGVRYYTCSPKYGVFAPPSRVQRIAGPKGPPGDGTIGKKIHQVTMTQPKRNLAAVRTPKDIASESSISRLLFCCWFPWMLRAEMQS
SIO_010081: clip3
subclass of: SO_0000673
so part of: clip3
location: join(3573494..3573647,3574786..3574925,3595611..3595704,3597181..3597342,3598595..3598713,3600439..3600675,3602308..3602443,3603542..3603670,3606304..3606438,3608633..3608756,3609203..3609267,3609895..3609967,3619588..3619642)
location: region:3573494-3619642:1
so has part: feature:3573494-3573647:1:exon
so has part: feature:3574786-3574925:1:exon
so has part: feature:3595611-3595704:1:exon
so has part: feature:3597181-3597342:1:exon
so has part: feature:3598595-3598713:1:exon
so has part: feature:3600439-3600675:1:exon
so has part: feature:3602308-3602443:1:exon
so has part: feature:3603542-3603670:1:exon
so has part: feature:3606304-3606438:1:exon
so has part: feature:3608633-3608756:1:exon
so has part: feature:3609203-3609267:1:exon
so has part: feature:3609895-3609967:1:exon
so has part: feature:3619588-3619642:1:exon

XP_048474333.1
type: Protein
SIO_000068: ncbiprotein

position:3619642:1
position: 3619642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3573494-3573647:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3574786-3574925:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3595611-3595704:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3597181-3597342:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3598595-3598713:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3600439-3600675:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3602308-3602443:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3603542-3603670:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3606304-3606438:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3608633-3608756:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3609203-3609267:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3609895-3609967:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3619588-3619642:1:exon

LOC109917552
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC109917552
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3630893..3633762)
location: region:3630893-3633762:-1
so has part: feature:3630893-3633762:-1:exon
subclass of: SO_0000010

109917552
type: Gene
SIO_000068: ncbigene

position:3630893:-1
position: 3630893
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3633762:-1
position: 3633762
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3630893-3633762:-1:exon

LOC109917552
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109917552
product: homeobox protein goosecoid-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 86% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_020517394.2
SIO_010081: LOC109917552
subclass of: SO_0000673
so part of: LOC109917552
location: complement(join(3630893..3631036,3633570..3633762))
location: region:3630893-3633762:-1
so has part: feature:3633570-3633762:-1:exon
so has part: feature:3630893-3631036:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3633570-3633762:-1:exon

position:3633570:-1
position: 3633570
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3630893-3631036:-1:exon

position:3631036:-1
position: 3631036
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC109917552
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109917552
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: homeobox protein goosecoid-like
translation: MPQLGLHLLSQVQKRRRRHRTVFTERQLEELENLFNKTSYPDSSARESLARTTHLSEETIKVWFKNRRAKMRKEKMSLLERLDSSSECNGTETVDKCPKQLLHIDINS
SIO_010081: LOC109917552
subclass of: SO_0000673
so part of: LOC109917552
location: complement(join(3630893..3631036,3633570..3633752))
location: region:3630893-3633752:-1
so has part: feature:3633570-3633752:-1:exon
so has part: feature:3630893-3631036:-1:exon

XP_020372983.1
type: Protein
SIO_000068: ncbiprotein

position:3633752:-1
position: 3633752
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3633570-3633752:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3630893-3631036:-1:exon

LOC109917556
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC109917556
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3641484..3716664
location: region:3641484-3716664:1
so has part: feature:3641484-3716664:1:exon
subclass of: SO_0000010

109917556
type: Gene
SIO_000068: ncbigene

position:3641484:1
position: 3641484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3716664:1
position: 3716664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3641484-3716664:1:exon

LOC109917556
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109917556
product: uncharacterized LOC109917556
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_020517398.2
SIO_010081: LOC109917556
subclass of: SO_0000673
so part of: LOC109917556
location: join(3641484..3641597,3646039..3646197,3664294..3664399,3665805..3665967,3668469..3668618,3671888..3672048,3674890..3675066,3675291..3675432,3679823..3680010,3681892..3682033,3682941..3683119,3686268..3686362,3686622..3686859,3692716..3692878,3696180..3696329,3698960..3699120,3703572..3703748,3704062..3704203,3710306..3710493,3710879..3711020,3712885..3716664)
location: region:3641484-3716664:1
so has part: feature:3641484-3641597:1:exon
so has part: feature:3646039-3646197:1:exon
so has part: feature:3664294-3664399:1:exon
so has part: feature:3665805-3665967:1:exon
so has part: feature:3668469-3668618:1:exon
so has part: feature:3671888-3672048:1:exon
so has part: feature:3674890-3675066:1:exon
so has part: feature:3675291-3675432:1:exon
so has part: feature:3679823-3680010:1:exon
so has part: feature:3681892-3682033:1:exon
so has part: feature:3682941-3683119:1:exon
so has part: feature:3686268-3686362:1:exon
so has part: feature:3686622-3686859:1:exon
so has part: feature:3692716-3692878:1:exon
so has part: feature:3696180-3696329:1:exon
so has part: feature:3698960-3699120:1:exon
so has part: feature:3703572-3703748:1:exon
so has part: feature:3704062-3704203:1:exon
so has part: feature:3710306-3710493:1:exon
so has part: feature:3710879-3711020:1:exon
so has part: feature:3712885-3716664:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3641484-3641597:1:exon

position:3641597:1
position: 3641597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3646039-3646197:1:exon

position:3646039:1
position: 3646039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3646197:1
position: 3646197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3664294-3664399:1:exon

position:3664294:1
position: 3664294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3664399:1
position: 3664399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3665805-3665967:1:exon

position:3665805:1
position: 3665805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3665967:1
position: 3665967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3668469-3668618:1:exon

position:3668469:1
position: 3668469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3668618:1
position: 3668618
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3671888-3672048:1:exon

position:3671888:1
position: 3671888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3672048:1
position: 3672048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3674890-3675066:1:exon

position:3674890:1
position: 3674890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3675066:1
position: 3675066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3675291-3675432:1:exon

position:3675291:1
position: 3675291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3675432:1
position: 3675432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3679823-3680010:1:exon

position:3679823:1
position: 3679823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3680010:1
position: 3680010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:3681892-3682033:1:exon

position:3681892:1
position: 3681892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3682033:1
position: 3682033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:3682941-3683119:1:exon

position:3682941:1
position: 3682941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3683119:1
position: 3683119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:3686268-3686362:1:exon

position:3686268:1
position: 3686268
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3686362:1
position: 3686362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:3686622-3686859:1:exon

position:3686622:1
position: 3686622
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3686859:1
position: 3686859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:3692716-3692878:1:exon

position:3692716:1
position: 3692716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3692878:1
position: 3692878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:3696180-3696329:1:exon

position:3696180:1
position: 3696180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3696329:1
position: 3696329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:3698960-3699120:1:exon

position:3698960:1
position: 3698960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3699120:1
position: 3699120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:3703572-3703748:1:exon

position:3703572:1
position: 3703572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3703748:1
position: 3703748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:3704062-3704203:1:exon

position:3704062:1
position: 3704062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3704203:1
position: 3704203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:3710306-3710493:1:exon

position:3710306:1
position: 3710306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3710493:1
position: 3710493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:3710879-3711020:1:exon

position:3710879:1
position: 3710879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3711020:1
position: 3711020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:3712885-3716664:1:exon

position:3712885:1
position: 3712885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109917556
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109917556
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC109917556
translation: MQEPHISVSACVTITTCIYVAPCMYQVPRITSWKSNIREHELQSKGQQLQKRRLPPGPPALPLLGNLFHVNLKSPHKSLIKLSEQYGPVFTVWFGTYPAVVLCGFETIKEALIERGHDFSSRYPIPVLHKVSGGHGVIASNGERWKNLRRFSLRTFRNFGMGKKSIEERIQEEAQFLVKTFRNKKESPFSPDFLMRCAASNIICSIVFGDRFEYGDKKFLSLLEMIAENGRILSSPWVQLYNNFPKIMDFLPGPHKKIFQNVSDLSAFLNKSIQSHKESLQKDFSRDYIDSFLIKMDEEKHNLDSEFDDKNLLMTTLNLFLAGTETSSTTLRWAIQILAKYPHIQEKVHQEIDEVIGSSRCPAIEDRAKMPYTNAVIHEVQRYVDLVPMNLPHMASNDIDFRGYLIPKGTFVIPVLSSVLKSTSQWETPNSFNPNHFLDKNGCFKNSESFMPFSAGKRKCLGESLACTEIFLFLTTLLQNFVFKPVIDCKDINISSAFSGILQIPHMYKFCAISRCVPTFLRRRMLSFSVRKTSKETPQGGPAQSELTQLLLFFQELLLISSAVTMDSSNPGTTLLLALLSVLLVVWFFRSKRPQYSRLPPAPPALPIVGNLFQMDIKAPHKSLIKLNEQYGPVFTLWFGGTPVVVLCGFETLKEGLIERGYDFSGRYLLPILQKISAGYGIGFSNGERWKQLRRFSLSTLKNFGMGKRSIEERIQEEAQFLVTAIRNKQEIPFNPDFLVRCAVSNNICSIVFGERFEYEDERFLTLMERTEEISRALSKPGVQIYNNFPKIMDFLPGPHQKIFQNIAGLKTFVNQMIQSHRDSLQKDFPRDYIDSFLNKMDEEKHNPDSEFTDENLLMSVVNLFLAGTETTSTTLQWAIQILVKYPHIQEKIYQEICEVIGSCRRPSIEDRAKMPYTDAVIHEIQRYIDLVPMNLPRMATKDIEFRGYLIPKGTLVTTLLSSALKATSQWETPESFNPNHFLDENGCFKKSESFMAFSAGKRMCLGASLARMELFLFLTTLLQNFVFNSVIDHKDIDISPATSGIMVIPHVYEFCAISR
SIO_010081: LOC109917556
subclass of: SO_0000673
so part of: LOC109917556
location: join(3646061..3646197,3664294..3664399,3665805..3665967,3668469..3668618,3671888..3672048,3674890..3675066,3675291..3675432,3679823..3680010,3681892..3682033,3682941..3683119,3686268..3686362,3686622..3686859,3692716..3692878,3696180..3696329,3698960..3699120,3703572..3703748,3704062..3704203,3710306..3710493,3710879..3711020,3712885..3713066)
location: region:3646061-3713066:1
so has part: feature:3646061-3646197:1:exon
so has part: feature:3664294-3664399:1:exon
so has part: feature:3665805-3665967:1:exon
so has part: feature:3668469-3668618:1:exon
so has part: feature:3671888-3672048:1:exon
so has part: feature:3674890-3675066:1:exon
so has part: feature:3675291-3675432:1:exon
so has part: feature:3679823-3680010:1:exon
so has part: feature:3681892-3682033:1:exon
so has part: feature:3682941-3683119:1:exon
so has part: feature:3686268-3686362:1:exon
so has part: feature:3686622-3686859:1:exon
so has part: feature:3692716-3692878:1:exon
so has part: feature:3696180-3696329:1:exon
so has part: feature:3698960-3699120:1:exon
so has part: feature:3703572-3703748:1:exon
so has part: feature:3704062-3704203:1:exon
so has part: feature:3710306-3710493:1:exon
so has part: feature:3710879-3711020:1:exon
so has part: feature:3712885-3713066:1:exon

XP_020372987.2
type: Protein
SIO_000068: ncbiprotein

position:3646061:1
position: 3646061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3713066:1
position: 3713066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3646061-3646197:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3664294-3664399:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3665805-3665967:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3668469-3668618:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3671888-3672048:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3674890-3675066:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3675291-3675432:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3679823-3680010:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3681892-3682033:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3682941-3683119:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3686268-3686362:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3686622-3686859:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3692716-3692878:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3696180-3696329:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3698960-3699120:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3703572-3703748:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3704062-3704203:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3710306-3710493:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3710879-3711020:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3712885-3713066:1:exon

alkbh6
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: alkbh6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3719278..3732330)
location: region:3719278-3732330:-1
so has part: feature:3719278-3732330:-1:exon
subclass of: SO_0000010

109917557
type: Gene
SIO_000068: ncbigene

position:3719278:-1
position: 3719278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3732330:-1
position: 3732330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3719278-3732330:-1:exon

alkbh6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: alkbh6
product: alkB homolog 6, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_020517400.2
SIO_010081: alkbh6
subclass of: SO_0000673
so part of: alkbh6
location: complement(join(3719278..3720152,3723622..3723732,3724465..3724616,3726913..3726973,3727509..3727577,3728515..3728651,3732220..3732330))
location: region:3719278-3732330:-1
so has part: feature:3732220-3732330:-1:exon
so has part: feature:3728515-3728651:-1:exon
so has part: feature:3727509-3727577:-1:exon
so has part: feature:3726913-3726973:-1:exon
so has part: feature:3724465-3724616:-1:exon
so has part: feature:3723622-3723732:-1:exon
so has part: feature:3719278-3720152:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3732220-3732330:-1:exon

position:3732220:-1
position: 3732220
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3728515-3728651:-1:exon

position:3728515:-1
position: 3728515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3728651:-1
position: 3728651
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3727509-3727577:-1:exon

position:3727509:-1
position: 3727509
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3727577:-1
position: 3727577
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3726913-3726973:-1:exon

position:3726913:-1
position: 3726913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3726973:-1
position: 3726973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3724465-3724616:-1:exon

position:3724465:-1
position: 3724465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3724616:-1
position: 3724616
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3723622-3723732:-1:exon

position:3723622:-1
position: 3723622
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3723732:-1
position: 3723732
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3719278-3720152:-1:exon

position:3720152:-1
position: 3720152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

alkbh6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: alkbh6
product: alkB homolog 6, transcript variant X4
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618378.1
SIO_010081: alkbh6
subclass of: SO_0000673
so part of: alkbh6
location: complement(join(3719278..3720152,3723622..3723732,3724465..3724616,3726913..3726973,3727509..3727577,3728515..3728651,3732064..3732189))
location: region:3719278-3732189:-1
so has part: feature:3732064-3732189:-1:exon
so has part: feature:3728515-3728651:-1:exon
so has part: feature:3727509-3727577:-1:exon
so has part: feature:3726913-3726973:-1:exon
so has part: feature:3724465-3724616:-1:exon
so has part: feature:3723622-3723732:-1:exon
so has part: feature:3719278-3720152:-1:exon

position:3732189:-1
position: 3732189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3732064-3732189:-1:exon

position:3732064:-1
position: 3732064
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3728515-3728651:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3727509-3727577:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3726913-3726973:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3724465-3724616:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3723622-3723732:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3719278-3720152:-1:exon

alkbh6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: alkbh6
product: alkB homolog 6, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618377.1
SIO_010081: alkbh6
subclass of: SO_0000673
so part of: alkbh6
location: complement(join(3719278..3720152,3723622..3723732,3724465..3724616,3726913..3726973,3727509..3727577,3728515..3728651,3731941..3732052))
location: region:3719278-3732052:-1
so has part: feature:3731941-3732052:-1:exon
so has part: feature:3728515-3728651:-1:exon
so has part: feature:3727509-3727577:-1:exon
so has part: feature:3726913-3726973:-1:exon
so has part: feature:3724465-3724616:-1:exon
so has part: feature:3723622-3723732:-1:exon
so has part: feature:3719278-3720152:-1:exon

position:3732052:-1
position: 3732052
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3731941-3732052:-1:exon

position:3731941:-1
position: 3731941
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3728515-3728651:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3727509-3727577:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3726913-3726973:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3724465-3724616:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3723622-3723732:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3719278-3720152:-1:exon

alkbh6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: alkbh6
product: alkB homolog 6, transcript variant X5
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618379.1
SIO_010081: alkbh6
subclass of: SO_0000673
so part of: alkbh6
location: complement(join(3719278..3720152,3723622..3723732,3724465..3724616,3726913..3726973,3727509..3727577,3731941..3732044))
location: region:3719278-3732044:-1
so has part: feature:3731941-3732044:-1:exon
so has part: feature:3727509-3727577:-1:exon
so has part: feature:3726913-3726973:-1:exon
so has part: feature:3724465-3724616:-1:exon
so has part: feature:3723622-3723732:-1:exon
so has part: feature:3719278-3720152:-1:exon

position:3732044:-1
position: 3732044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3731941-3732044:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3727509-3727577:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3726913-3726973:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3724465-3724616:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3723622-3723732:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3719278-3720152:-1:exon

alkbh6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: alkbh6
product: alkB homolog 6, transcript variant X3
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_020517399.2
SIO_010081: alkbh6
subclass of: SO_0000673
so part of: alkbh6
location: complement(join(3719278..3720152,3723622..3723732,3724465..3724616,3726913..3726973,3727509..3727577,3728515..3728651,3731507..3731688))
location: region:3719278-3731688:-1
so has part: feature:3731507-3731688:-1:exon
so has part: feature:3728515-3728651:-1:exon
so has part: feature:3727509-3727577:-1:exon
so has part: feature:3726913-3726973:-1:exon
so has part: feature:3724465-3724616:-1:exon
so has part: feature:3723622-3723732:-1:exon
so has part: feature:3719278-3720152:-1:exon

position:3731688:-1
position: 3731688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3731507-3731688:-1:exon

position:3731507:-1
position: 3731507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3728515-3728651:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3727509-3727577:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3726913-3726973:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3724465-3724616:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3723622-3723732:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3719278-3720152:-1:exon

alkbh6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: alkbh6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 isoform X1
translation: MDAQNHRPCELKPYHVDQAPATVYYIPKFITVSEENYLLQQVYNSPKPKWTQLLGRRLQNWGGLPHSKGMLVEKLPDWLAKYAKKISSLGPFAGQVANHVLVNEYNPGEGIMPHEDGPLYFPTVTTISLGSPTLLDFYHPIEREDEEGKVYSPQTEENRYFLSLLLEPRSLLVLQDDMYVKYLHGIRPVTEDIVTEKVANLKSCNTELGVVLQRSTRISLTIRYVPKVLKTTILLGRK
SIO_010081: alkbh6
subclass of: SO_0000673
so part of: alkbh6
location: complement(join(3719883..3720152,3723622..3723732,3724465..3724616,3726913..3726973,3727509..3727577,3728515..3728568))
location: region:3719883-3728568:-1
so has part: feature:3728515-3728568:-1:exon
so has part: feature:3727509-3727577:-1:exon
so has part: feature:3726913-3726973:-1:exon
so has part: feature:3724465-3724616:-1:exon
so has part: feature:3723622-3723732:-1:exon
so has part: feature:3719883-3720152:-1:exon

XP_020372988.1
type: Protein
SIO_000068: ncbiprotein

position:3719883:-1
position: 3719883
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3728568:-1
position: 3728568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3728515-3728568:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3727509-3727577:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3726913-3726973:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3724465-3724616:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3723622-3723732:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3719883-3720152:-1:exon

alkbh6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: alkbh6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 isoform X1
translation: MDAQNHRPCELKPYHVDQAPATVYYIPKFITVSEENYLLQQVYNSPKPKWTQLLGRRLQNWGGLPHSKGMLVEKLPDWLAKYAKKISSLGPFAGQVANHVLVNEYNPGEGIMPHEDGPLYFPTVTTISLGSPTLLDFYHPIEREDEEGKVYSPQTEENRYFLSLLLEPRSLLVLQDDMYVKYLHGIRPVTEDIVTEKVANLKSCNTELGVVLQRSTRISLTIRYVPKVLKTTILLGRK
SIO_010081: alkbh6
subclass of: SO_0000673
so part of: alkbh6
location: complement(join(3719883..3720152,3723622..3723732,3724465..3724616,3726913..3726973,3727509..3727577,3728515..3728568))
location: region:3719883-3728568:-1
so has part: feature:3728515-3728568:-1:exon
so has part: feature:3727509-3727577:-1:exon
so has part: feature:3726913-3726973:-1:exon
so has part: feature:3724465-3724616:-1:exon
so has part: feature:3723622-3723732:-1:exon
so has part: feature:3719883-3720152:-1:exon

XP_020372989.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3728515-3728568:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3727509-3727577:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3726913-3726973:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3724465-3724616:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3723622-3723732:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3719883-3720152:-1:exon

alkbh6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: alkbh6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 isoform X1
translation: MDAQNHRPCELKPYHVDQAPATVYYIPKFITVSEENYLLQQVYNSPKPKWTQLLGRRLQNWGGLPHSKGMLVEKLPDWLAKYAKKISSLGPFAGQVANHVLVNEYNPGEGIMPHEDGPLYFPTVTTISLGSPTLLDFYHPIEREDEEGKVYSPQTEENRYFLSLLLEPRSLLVLQDDMYVKYLHGIRPVTEDIVTEKVANLKSCNTELGVVLQRSTRISLTIRYVPKVLKTTILLGRK
SIO_010081: alkbh6
subclass of: SO_0000673
so part of: alkbh6
location: complement(join(3719883..3720152,3723622..3723732,3724465..3724616,3726913..3726973,3727509..3727577,3728515..3728568))
location: region:3719883-3728568:-1
so has part: feature:3728515-3728568:-1:exon
so has part: feature:3727509-3727577:-1:exon
so has part: feature:3726913-3726973:-1:exon
so has part: feature:3724465-3724616:-1:exon
so has part: feature:3723622-3723732:-1:exon
so has part: feature:3719883-3720152:-1:exon

XP_048474334.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3728515-3728568:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3727509-3727577:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3726913-3726973:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3724465-3724616:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3723622-3723732:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3719883-3720152:-1:exon

alkbh6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: alkbh6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 isoform X1
translation: MDAQNHRPCELKPYHVDQAPATVYYIPKFITVSEENYLLQQVYNSPKPKWTQLLGRRLQNWGGLPHSKGMLVEKLPDWLAKYAKKISSLGPFAGQVANHVLVNEYNPGEGIMPHEDGPLYFPTVTTISLGSPTLLDFYHPIEREDEEGKVYSPQTEENRYFLSLLLEPRSLLVLQDDMYVKYLHGIRPVTEDIVTEKVANLKSCNTELGVVLQRSTRISLTIRYVPKVLKTTILLGRK
SIO_010081: alkbh6
subclass of: SO_0000673
so part of: alkbh6
location: complement(join(3719883..3720152,3723622..3723732,3724465..3724616,3726913..3726973,3727509..3727577,3728515..3728568))
location: region:3719883-3728568:-1
so has part: feature:3728515-3728568:-1:exon
so has part: feature:3727509-3727577:-1:exon
so has part: feature:3726913-3726973:-1:exon
so has part: feature:3724465-3724616:-1:exon
so has part: feature:3723622-3723732:-1:exon
so has part: feature:3719883-3720152:-1:exon

XP_048474335.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3728515-3728568:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3727509-3727577:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3726913-3726973:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3724465-3724616:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3723622-3723732:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3719883-3720152:-1:exon

alkbh6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: alkbh6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 isoform X2
translation: MLVEKLPDWLAKYAKKISSLGPFAGQVANHVLVNEYNPGEGIMPHEDGPLYFPTVTTISLGSPTLLDFYHPIEREDEEGKVYSPQTEENRYFLSLLLEPRSLLVLQDDMYVKYLHGIRPVTEDIVTEKVANLKSCNTELGVVLQRSTRISLTIRYVPKVLKTTILLGRK
SIO_010081: alkbh6
subclass of: SO_0000673
so part of: alkbh6
location: complement(join(3719883..3720152,3723622..3723732,3724465..3724593))
location: region:3719883-3724593:-1
so has part: feature:3724465-3724593:-1:exon
so has part: feature:3723622-3723732:-1:exon
so has part: feature:3719883-3720152:-1:exon

XP_048474336.1
type: Protein
SIO_000068: ncbiprotein

position:3724593:-1
position: 3724593
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3724465-3724593:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3723622-3723732:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3719883-3720152:-1:exon

LOC125487309
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC125487309
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3732421..3733420
location: region:3732421-3733420:1
so has part: feature:3732421-3733420:1:exon
subclass of: SO_0000011

125487309
type: Gene
SIO_000068: ncbigene

position:3732421:1
position: 3732421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3733420:1
position: 3733420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3732421-3733420:1:exon

LOC125487309
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 259920
nc RNA class: lncRNA
gene: LOC125487309
product: uncharacterized LOC125487309
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_007265800.1
SIO_010081: LOC125487309
subclass of: SO_0000673
so part of: LOC125487309
location: join(3732421..3732850,3733118..3733420)
location: region:3732421-3733420:1
so has part: feature:3732421-3732850:1:exon
so has part: feature:3733118-3733420:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3732421-3732850:1:exon

position:3732850:1
position: 3732850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3733118-3733420:1:exon

position:3733118:1
position: 3733118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125487310
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC125487310
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3736444..3773556
location: region:3736444-3773556:1
so has part: feature:3736444-3773556:1:exon
subclass of: SO_0000011

125487310
type: Gene
SIO_000068: ncbigene

position:3736444:1
position: 3736444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3773556:1
position: 3773556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3736444-3773556:1:exon

LOC125487310
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 259920
nc RNA class: lncRNA
gene: LOC125487310
product: uncharacterized LOC125487310
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 long SRA reads, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_007265801.1
SIO_010081: LOC125487310
subclass of: SO_0000673
so part of: LOC125487310
location: join(3736444..3736602,3739892..3740007,3773330..3773556)
location: region:3736444-3773556:1
so has part: feature:3736444-3736602:1:exon
so has part: feature:3739892-3740007:1:exon
so has part: feature:3773330-3773556:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3736444-3736602:1:exon

position:3736602:1
position: 3736602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3739892-3740007:1:exon

position:3739892:1
position: 3739892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3740007:1
position: 3740007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3773330-3773556:1:exon

position:3773330:1
position: 3773330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125487311
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC125487311
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3854014..3861183
location: region:3854014-3861183:1
so has part: feature:3854014-3861183:1:exon
subclass of: SO_0000011

125487311
type: Gene
SIO_000068: ncbigene

position:3854014:1
position: 3854014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3861183:1
position: 3861183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3854014-3861183:1:exon

LOC125487311
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 259920
nc RNA class: lncRNA
gene: LOC125487311
product: uncharacterized LOC125487311
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XR_007265802.1
SIO_010081: LOC125487311
subclass of: SO_0000673
so part of: LOC125487311
location: join(3854014..3854140,3858432..3859431,3860898..3861183)
location: region:3854014-3861183:1
so has part: feature:3854014-3854140:1:exon
so has part: feature:3858432-3859431:1:exon
so has part: feature:3860898-3861183:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3854014-3854140:1:exon

position:3854140:1
position: 3854140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3858432-3859431:1:exon

position:3858432:1
position: 3858432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3859431:1
position: 3859431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3860898-3861183:1:exon

position:3860898:1
position: 3860898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109912859
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC109912859
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3875650..3947275)
location: region:3875650-3947275:-1
so has part: feature:3875650-3947275:-1:exon
subclass of: SO_0000010

109912859
type: Gene
SIO_000068: ncbigene

position:3875650:-1
position: 3875650
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3947275:-1
position: 3947275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3875650-3947275:-1:exon

LOC109912859
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109912859
product: SPARC-related modular calcium-binding protein 1-like, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618346.1
SIO_010081: LOC109912859
subclass of: SO_0000673
so part of: LOC109912859
location: complement(join(3875650..3876566,3878240..3878336,3879534..3879616,3880728..3880920,3882602..3882670,3884670..3884747,3887015..3887065,3891890..3891940,3893652..3893751,3902752..3902864,3907445..3907616,3946889..3947275))
location: region:3875650-3947275:-1
so has part: feature:3946889-3947275:-1:exon
so has part: feature:3907445-3907616:-1:exon
so has part: feature:3902752-3902864:-1:exon
so has part: feature:3893652-3893751:-1:exon
so has part: feature:3891890-3891940:-1:exon
so has part: feature:3887015-3887065:-1:exon
so has part: feature:3884670-3884747:-1:exon
so has part: feature:3882602-3882670:-1:exon
so has part: feature:3880728-3880920:-1:exon
so has part: feature:3879534-3879616:-1:exon
so has part: feature:3878240-3878336:-1:exon
so has part: feature:3875650-3876566:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3946889-3947275:-1:exon

position:3946889:-1
position: 3946889
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3907445-3907616:-1:exon

position:3907445:-1
position: 3907445
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3907616:-1
position: 3907616
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3902752-3902864:-1:exon

position:3902752:-1
position: 3902752
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3902864:-1
position: 3902864
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3893652-3893751:-1:exon

position:3893652:-1
position: 3893652
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3893751:-1
position: 3893751
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3891890-3891940:-1:exon

position:3891890:-1
position: 3891890
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3891940:-1
position: 3891940
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3887015-3887065:-1:exon

position:3887015:-1
position: 3887015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3887065:-1
position: 3887065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3884670-3884747:-1:exon

position:3884670:-1
position: 3884670
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3884747:-1
position: 3884747
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3882602-3882670:-1:exon

position:3882602:-1
position: 3882602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3882670:-1
position: 3882670
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3880728-3880920:-1:exon

position:3880728:-1
position: 3880728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3880920:-1
position: 3880920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:3879534-3879616:-1:exon

position:3879534:-1
position: 3879534
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3879616:-1
position: 3879616
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:3878240-3878336:-1:exon

position:3878240:-1
position: 3878240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3878336:-1
position: 3878336
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:3875650-3876566:-1:exon

position:3876566:-1
position: 3876566
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC109912859
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109912859
product: SPARC-related modular calcium-binding protein 1-like, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618345.1
SIO_010081: LOC109912859
subclass of: SO_0000673
so part of: LOC109912859
location: complement(join(3875650..3876566,3878240..3878336,3879534..3879616,3880728..3880920,3882602..3882670,3884670..3884747,3887009..3887065,3891890..3891940,3893652..3893751,3902752..3902864,3907445..3907616,3946889..3947275))
location: region:3875650-3947275:-1
so has part: feature:3946889-3947275:-1:exon
so has part: feature:3907445-3907616:-1:exon
so has part: feature:3902752-3902864:-1:exon
so has part: feature:3893652-3893751:-1:exon
so has part: feature:3891890-3891940:-1:exon
so has part: feature:3887009-3887065:-1:exon
so has part: feature:3884670-3884747:-1:exon
so has part: feature:3882602-3882670:-1:exon
so has part: feature:3880728-3880920:-1:exon
so has part: feature:3879534-3879616:-1:exon
so has part: feature:3878240-3878336:-1:exon
so has part: feature:3875650-3876566:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3946889-3947275:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3907445-3907616:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3902752-3902864:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3893652-3893751:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3891890-3891940:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3887009-3887065:-1:exon

position:3887009:-1
position: 3887009
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3884670-3884747:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3882602-3882670:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3880728-3880920:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3879534-3879616:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3878240-3878336:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3875650-3876566:-1:exon

LOC109912859
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109912859
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SPARC-related modular calcium-binding protein 1-like isoform X2
translation: MSPLSLILLTIELFGFSATSKPHRFDRTLFLIAESDRGGLCNIDCSKAQQKPVCGSDRKFYKSHCAFQRAKCRDPTLETMPRSRCSERATARCQEDRAQALAQTRKATDSIIVPECNEDGSFAQVQCHKLTGYCWCVTPDGKPISGSSVHNRTPTCSDSTKDKTSQRGRDSSRMEQGIKLRPTTRTLIRNTGEALDHRKQRPVEDRHKDALLISKNPELTYPALWFLFTRDAKSNRSAKLDQPVSCDQERRSAIEEAKQHQYEGAFVPQCSSNGLYKQVQCHQATGYCWCVRVDSGHPIQGTTARNQTPDCGSAGRSKISEMAPLFRDRKLQGCPGGKKTEFVAGLLKSLIMDMDQSGYHSTWRRVSEGSTSFLLEDRAIRWYFGRLDKDFNNEISEKELRPFKVYLRKNAKPKKCTRKFIEYCDLNSSKSISLHELKGCLGFIKSRSRPMF
SIO_010081: LOC109912859
subclass of: SO_0000673
so part of: LOC109912859
location: complement(join(3876302..3876566,3878240..3878336,3879534..3879616,3880728..3880920,3882602..3882670,3884670..3884747,3887015..3887065,3891890..3891940,3893652..3893751,3902752..3902864,3907445..3907616,3946889..3946975))
location: region:3876302-3946975:-1
so has part: feature:3946889-3946975:-1:exon
so has part: feature:3907445-3907616:-1:exon
so has part: feature:3902752-3902864:-1:exon
so has part: feature:3893652-3893751:-1:exon
so has part: feature:3891890-3891940:-1:exon
so has part: feature:3887015-3887065:-1:exon
so has part: feature:3884670-3884747:-1:exon
so has part: feature:3882602-3882670:-1:exon
so has part: feature:3880728-3880920:-1:exon
so has part: feature:3879534-3879616:-1:exon
so has part: feature:3878240-3878336:-1:exon
so has part: feature:3876302-3876566:-1:exon

XP_048474303.1
type: Protein
SIO_000068: ncbiprotein

position:3876302:-1
position: 3876302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3946975:-1
position: 3946975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3946889-3946975:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3907445-3907616:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3902752-3902864:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3893652-3893751:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3891890-3891940:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3887015-3887065:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3884670-3884747:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3882602-3882670:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3880728-3880920:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3879534-3879616:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3878240-3878336:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3876302-3876566:-1:exon

LOC109912859
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109912859
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SPARC-related modular calcium-binding protein 1-like isoform X1
translation: MSPLSLILLTIELFGFSATSKPHRFDRTLFLIAESDRGGLCNIDCSKAQQKPVCGSDRKFYKSHCAFQRAKCRDPTLETMPRSRCSERATARCQEDRAQALAQTRKATDSIIVPECNEDGSFAQVQCHKLTGYCWCVTPDGKPISGSSVHNRTPTCSDSTKDKTSQRGRDSSRMEQGIKLRPTTRTLIRNTGKGEALDHRKQRPVEDRHKDALLISKNPELTYPALWFLFTRDAKSNRSAKLDQPVSCDQERRSAIEEAKQHQYEGAFVPQCSSNGLYKQVQCHQATGYCWCVRVDSGHPIQGTTARNQTPDCGSAGRSKISEMAPLFRDRKLQGCPGGKKTEFVAGLLKSLIMDMDQSGYHSTWRRVSEGSTSFLLEDRAIRWYFGRLDKDFNNEISEKELRPFKVYLRKNAKPKKCTRKFIEYCDLNSSKSISLHELKGCLGFIKSRSRPMF
SIO_010081: LOC109912859
subclass of: SO_0000673
so part of: LOC109912859
location: complement(join(3876302..3876566,3878240..3878336,3879534..3879616,3880728..3880920,3882602..3882670,3884670..3884747,3887009..3887065,3891890..3891940,3893652..3893751,3902752..3902864,3907445..3907616,3946889..3946975))
location: region:3876302-3946975:-1
so has part: feature:3946889-3946975:-1:exon
so has part: feature:3907445-3907616:-1:exon
so has part: feature:3902752-3902864:-1:exon
so has part: feature:3893652-3893751:-1:exon
so has part: feature:3891890-3891940:-1:exon
so has part: feature:3887009-3887065:-1:exon
so has part: feature:3884670-3884747:-1:exon
so has part: feature:3882602-3882670:-1:exon
so has part: feature:3880728-3880920:-1:exon
so has part: feature:3879534-3879616:-1:exon
so has part: feature:3878240-3878336:-1:exon
so has part: feature:3876302-3876566:-1:exon

XP_048474302.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3946889-3946975:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3907445-3907616:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3902752-3902864:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3893652-3893751:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3891890-3891940:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3887009-3887065:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3884670-3884747:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3882602-3882670:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3880728-3880920:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3879534-3879616:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3878240-3878336:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3876302-3876566:-1:exon

LOC109935055
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC109935055
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3967278..3989137
location: region:3967278-3989137:1
so has part: feature:3967278-3989137:1:exon
subclass of: SO_0000010

109935055
type: Gene
SIO_000068: ncbigene

position:3967278:1
position: 3967278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3989137:1
position: 3989137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3967278-3989137:1:exon

LOC109935055
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109935055
product: dynein axonemal assembly factor 10-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_048618365.1
SIO_010081: LOC109935055
subclass of: SO_0000673
so part of: LOC109935055
location: join(3967278..3967372,3971106..3971307,3973136..3973336,3978084..3978184,3981527..3981657,3983925..3984026,3984131..3984246,3985439..3985573,3987158..3987255,3987854..3989137)
location: region:3967278-3989137:1
so has part: feature:3967278-3967372:1:exon
so has part: feature:3971106-3971307:1:exon
so has part: feature:3973136-3973336:1:exon
so has part: feature:3978084-3978184:1:exon
so has part: feature:3981527-3981657:1:exon
so has part: feature:3983925-3984026:1:exon
so has part: feature:3984131-3984246:1:exon
so has part: feature:3985439-3985573:1:exon
so has part: feature:3987158-3987255:1:exon
so has part: feature:3987854-3989137:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3967278-3967372:1:exon

position:3967372:1
position: 3967372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3971106-3971307:1:exon

position:3971106:1
position: 3971106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3971307:1
position: 3971307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3973136-3973336:1:exon

position:3973136:1
position: 3973136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3973336:1
position: 3973336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3978084-3978184:1:exon

position:3978084:1
position: 3978084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3978184:1
position: 3978184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3981527-3981657:1:exon

position:3981527:1
position: 3981527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3981657:1
position: 3981657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3983925-3984026:1:exon

position:3983925:1
position: 3983925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3984026:1
position: 3984026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3984131-3984246:1:exon

position:3984131:1
position: 3984131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3984246:1
position: 3984246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3985439-3985573:1:exon

position:3985439:1
position: 3985439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3985573:1
position: 3985573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3987158-3987255:1:exon

position:3987158:1
position: 3987158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3987255:1
position: 3987255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:3987854-3989137:1:exon

position:3987854:1
position: 3987854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109935055
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109935055
product: dynein axonemal assembly factor 10-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_048618364.1
SIO_010081: LOC109935055
subclass of: SO_0000673
so part of: LOC109935055
location: join(3970726..3971307,3973136..3973336,3978084..3978184,3981527..3981657,3983925..3984026,3984131..3984246,3985439..3985573,3987158..3987255,3987854..3989137)
location: region:3970726-3989137:1
so has part: feature:3970726-3971307:1:exon
so has part: feature:3973136-3973336:1:exon
so has part: feature:3978084-3978184:1:exon
so has part: feature:3981527-3981657:1:exon
so has part: feature:3983925-3984026:1:exon
so has part: feature:3984131-3984246:1:exon
so has part: feature:3985439-3985573:1:exon
so has part: feature:3987158-3987255:1:exon
so has part: feature:3987854-3989137:1:exon

position:3970726:1
position: 3970726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3970726-3971307:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3973136-3973336:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3978084-3978184:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3981527-3981657:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3983925-3984026:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3984131-3984246:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3985439-3985573:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3987158-3987255:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3987854-3989137:1:exon

LOC109935055
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109935055
product: dynein axonemal assembly factor 10-like, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_048618366.1
SIO_010081: LOC109935055
subclass of: SO_0000673
so part of: LOC109935055
location: join(3970726..3971307,3973136..3973336,3978084..3978184,3981527..3981657,3983925..3984026,3984131..3984246,3985439..3985573,3987158..3987255,3987857..3989137)
location: region:3970726-3989137:1
so has part: feature:3970726-3971307:1:exon
so has part: feature:3973136-3973336:1:exon
so has part: feature:3978084-3978184:1:exon
so has part: feature:3981527-3981657:1:exon
so has part: feature:3983925-3984026:1:exon
so has part: feature:3984131-3984246:1:exon
so has part: feature:3985439-3985573:1:exon
so has part: feature:3987158-3987255:1:exon
so has part: feature:3987857-3989137:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3970726-3971307:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3973136-3973336:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3978084-3978184:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3981527-3981657:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3983925-3984026:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3984131-3984246:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3985439-3985573:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3987158-3987255:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3987857-3989137:1:exon

position:3987857:1
position: 3987857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109935055
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109935055
product: dynein axonemal assembly factor 10-like, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_048618367.1
SIO_010081: LOC109935055
subclass of: SO_0000673
so part of: LOC109935055
location: join(3970726..3971307,3978084..3978184,3981527..3981657,3983925..3984026,3984131..3984246,3985439..3985573,3987158..3987255,3987854..3989137)
location: region:3970726-3989137:1
so has part: feature:3970726-3971307:1:exon
so has part: feature:3978084-3978184:1:exon
so has part: feature:3981527-3981657:1:exon
so has part: feature:3983925-3984026:1:exon
so has part: feature:3984131-3984246:1:exon
so has part: feature:3985439-3985573:1:exon
so has part: feature:3987158-3987255:1:exon
so has part: feature:3987854-3989137:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3970726-3971307:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3978084-3978184:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3981527-3981657:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3983925-3984026:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3984131-3984246:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3985439-3985573:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3987158-3987255:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3987854-3989137:1:exon

LOC109935055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109935055
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: dynein axonemal assembly factor 10-like isoform X1
translation: MSDCPKPRLLSLSHRKLPLTPFGCLWIPCSNRFVCLGTDSGSGAPNRGIIRVYGTTSGEIRDVHTPLVTFCTNIPESTISVSFLILLWDVEPTGRTSTYCPLLIALELTYIQRAVKSHSHFSESGTTYKPNQIEKPRAFRCGTFGATSLQQRHLATGDFEGNLHIWNLEASETPLYSAKAHLEIINGIDGVGGLENGHGAPEIVTGSRDGTVKVWDSRQKDLPVANMEPAVGFNRRDCWTVAFGHSCSQWDRCVCAGYDNGDIKLFDLRNMEVRWETNVKSGVCCVEFAGKDMSLNKLVATTLEGRVHVFNMQKYHTNSGFICRSEKPYKFTAWVVRHLPQNRTVFITSGGAGCLHLWKHSESSLMLERSDNEPDDKTSTCTTTLLNTISLSSQPIGSLDWNTDKQGLCICASFDHNVHILIIAEQQCF
SIO_010081: LOC109935055
subclass of: SO_0000673
so part of: LOC109935055
location: join(3971113..3971307,3973136..3973336,3978084..3978184,3981527..3981657,3983925..3984026,3984131..3984246,3985439..3985573,3987158..3987255,3987854..3988064)
location: region:3971113-3988064:1
so has part: feature:3971113-3971307:1:exon
so has part: feature:3973136-3973336:1:exon
so has part: feature:3978084-3978184:1:exon
so has part: feature:3981527-3981657:1:exon
so has part: feature:3983925-3984026:1:exon
so has part: feature:3984131-3984246:1:exon
so has part: feature:3985439-3985573:1:exon
so has part: feature:3987158-3987255:1:exon
so has part: feature:3987854-3988064:1:exon

XP_048474321.1
type: Protein
SIO_000068: ncbiprotein

position:3971113:1
position: 3971113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3988064:1
position: 3988064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3971113-3971307:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3973136-3973336:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3978084-3978184:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3981527-3981657:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3983925-3984026:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3984131-3984246:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3985439-3985573:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3987158-3987255:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3987854-3988064:1:exon

LOC109935055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109935055
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: dynein axonemal assembly factor 10-like isoform X1
translation: MSDCPKPRLLSLSHRKLPLTPFGCLWIPCSNRFVCLGTDSGSGAPNRGIIRVYGTTSGEIRDVHTPLVTFCTNIPESTISVSFLILLWDVEPTGRTSTYCPLLIALELTYIQRAVKSHSHFSESGTTYKPNQIEKPRAFRCGTFGATSLQQRHLATGDFEGNLHIWNLEASETPLYSAKAHLEIINGIDGVGGLENGHGAPEIVTGSRDGTVKVWDSRQKDLPVANMEPAVGFNRRDCWTVAFGHSCSQWDRCVCAGYDNGDIKLFDLRNMEVRWETNVKSGVCCVEFAGKDMSLNKLVATTLEGRVHVFNMQKYHTNSGFICRSEKPYKFTAWVVRHLPQNRTVFITSGGAGCLHLWKHSESSLMLERSDNEPDDKTSTCTTTLLNTISLSSQPIGSLDWNTDKQGLCICASFDHNVHILIIAEQQCF
SIO_010081: LOC109935055
subclass of: SO_0000673
so part of: LOC109935055
location: join(3971113..3971307,3973136..3973336,3978084..3978184,3981527..3981657,3983925..3984026,3984131..3984246,3985439..3985573,3987158..3987255,3987854..3988064)
location: region:3971113-3988064:1
so has part: feature:3971113-3971307:1:exon
so has part: feature:3973136-3973336:1:exon
so has part: feature:3978084-3978184:1:exon
so has part: feature:3981527-3981657:1:exon
so has part: feature:3983925-3984026:1:exon
so has part: feature:3984131-3984246:1:exon
so has part: feature:3985439-3985573:1:exon
so has part: feature:3987158-3987255:1:exon
so has part: feature:3987854-3988064:1:exon

XP_048474322.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3971113-3971307:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3973136-3973336:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3978084-3978184:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3981527-3981657:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3983925-3984026:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3984131-3984246:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3985439-3985573:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3987158-3987255:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3987854-3988064:1:exon

LOC109935055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109935055
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: dynein axonemal assembly factor 10-like isoform X2
translation: MSDCPKPRLLSLSHRKLPLTPFGCLWIPCSNRFVCLGTDSGSGAPNRGIIRVYGTTSGEIRDVHTPLVTFCTNIPESTISVSFLILLWDVEPTGRTSTYCPLLIALELTYIQRAVKSHSHFSESGTTYKPNQIEKPRAFRCGTFGATSLQQRHLATGDFEGNLHIWNLEASETPLYSAKAHLEIINGIDGVGGLENGHGAPEIVTGSRDGTVKVWDSRQKDLPVANMEPAVGFNRRDCWTVAFGHSCSQWDRCVCAGYDNGDIKLFDLRNMEVRWETNVKSGVCCVEFAGKDMSLNKLVATTLEGRVHVFNMQKYHTNSGFICRSEKPYKFTAWVVRHLPQNRTVFITSGGAGCLHLWKHESSLMLERSDNEPDDKTSTCTTTLLNTISLSSQPIGSLDWNTDKQGLCICASFDHNVHILIIAEQQCF
SIO_010081: LOC109935055
subclass of: SO_0000673
so part of: LOC109935055
location: join(3971113..3971307,3973136..3973336,3978084..3978184,3981527..3981657,3983925..3984026,3984131..3984246,3985439..3985573,3987158..3987255,3987857..3988064)
location: region:3971113-3988064:1
so has part: feature:3971113-3971307:1:exon
so has part: feature:3973136-3973336:1:exon
so has part: feature:3978084-3978184:1:exon
so has part: feature:3981527-3981657:1:exon
so has part: feature:3983925-3984026:1:exon
so has part: feature:3984131-3984246:1:exon
so has part: feature:3985439-3985573:1:exon
so has part: feature:3987158-3987255:1:exon
so has part: feature:3987857-3988064:1:exon

XP_048474323.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3971113-3971307:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3973136-3973336:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3978084-3978184:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3981527-3981657:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3983925-3984026:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3984131-3984246:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3985439-3985573:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3987158-3987255:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3987857-3988064:1:exon

LOC109935055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109935055
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: dynein axonemal assembly factor 10-like isoform X3
translation: MSDCPKPRLLSLSHRKLPLTPFGCLWIPCSNRFVCLGTDSGSGAPNRGIIRVYGTTSGEIRDVHTIEKPRAFRCGTFGATSLQQRHLATGDFEGNLHIWNLEASETPLYSAKAHLEIINGIDGVGGLENGHGAPEIVTGSRDGTVKVWDSRQKDLPVANMEPAVGFNRRDCWTVAFGHSCSQWDRCVCAGYDNGDIKLFDLRNMEVRWETNVKSGVCCVEFAGKDMSLNKLVATTLEGRVHVFNMQKYHTNSGFICRSEKPYKFTAWVVRHLPQNRTVFITSGGAGCLHLWKHSESSLMLERSDNEPDDKTSTCTTTLLNTISLSSQPIGSLDWNTDKQGLCICASFDHNVHILIIAEQQCF
SIO_010081: LOC109935055
subclass of: SO_0000673
so part of: LOC109935055
location: join(3971113..3971307,3978084..3978184,3981527..3981657,3983925..3984026,3984131..3984246,3985439..3985573,3987158..3987255,3987854..3988064)
location: region:3971113-3988064:1
so has part: feature:3971113-3971307:1:exon
so has part: feature:3978084-3978184:1:exon
so has part: feature:3981527-3981657:1:exon
so has part: feature:3983925-3984026:1:exon
so has part: feature:3984131-3984246:1:exon
so has part: feature:3985439-3985573:1:exon
so has part: feature:3987158-3987255:1:exon
so has part: feature:3987854-3988064:1:exon

XP_048474324.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3971113-3971307:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3978084-3978184:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3981527-3981657:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3983925-3984026:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3984131-3984246:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3985439-3985573:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3987158-3987255:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3987854-3988064:1:exon

LOC125487306
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC125487306
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3972127..3973386)
location: region:3972127-3973386:-1
so has part: feature:3972127-3973386:-1:exon
subclass of: SO_0000011

125487306
type: Gene
SIO_000068: ncbigene

position:3972127:-1
position: 3972127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3973386:-1
position: 3973386
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3972127-3973386:-1:exon

LOC125487306
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 259920
nc RNA class: lncRNA
gene: LOC125487306
product: uncharacterized LOC125487306
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_007265798.1
SIO_010081: LOC125487306
subclass of: SO_0000673
so part of: LOC125487306
location: complement(join(3972127..3972155,3972807..3972908,3973299..3973386))
location: region:3972127-3973386:-1
so has part: feature:3973299-3973386:-1:exon
so has part: feature:3972807-3972908:-1:exon
so has part: feature:3972127-3972155:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3973299-3973386:-1:exon

position:3973299:-1
position: 3973299
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3972807-3972908:-1:exon

position:3972807:-1
position: 3972807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3972908:-1
position: 3972908
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3972127-3972155:-1:exon

position:3972155:-1
position: 3972155
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC109935059
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC109935059
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3991559..4009662)
location: region:3991559-4009662:-1
so has part: feature:3991559-4009662:-1:exon
subclass of: SO_0000010

109935059
type: Gene
SIO_000068: ncbigene

position:3991559:-1
position: 3991559
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4009662:-1
position: 4009662
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3991559-4009662:-1:exon

LOC109935059
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109935059
product: serine/arginine-rich splicing factor 5-like, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_020533748.2
SIO_010081: LOC109935059
subclass of: SO_0000673
so part of: LOC109935059
location: complement(join(3991559..3993272,3994066..3994176,3995184..3995257,3997942..3998011,4001382..4001486,4003732..4003802,4007627..4007776,4009491..4009662))
location: region:3991559-4009662:-1
so has part: feature:4009491-4009662:-1:exon
so has part: feature:4007627-4007776:-1:exon
so has part: feature:4003732-4003802:-1:exon
so has part: feature:4001382-4001486:-1:exon
so has part: feature:3997942-3998011:-1:exon
so has part: feature:3995184-3995257:-1:exon
so has part: feature:3994066-3994176:-1:exon
so has part: feature:3991559-3993272:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4009491-4009662:-1:exon

position:4009491:-1
position: 4009491
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4007627-4007776:-1:exon

position:4007627:-1
position: 4007627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4007776:-1
position: 4007776
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4003732-4003802:-1:exon

position:4003732:-1
position: 4003732
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4003802:-1
position: 4003802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4001382-4001486:-1:exon

position:4001382:-1
position: 4001382
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4001486:-1
position: 4001486
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3997942-3998011:-1:exon

position:3997942:-1
position: 3997942
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3998011:-1
position: 3998011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3995184-3995257:-1:exon

position:3995184:-1
position: 3995184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3995257:-1
position: 3995257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3994066-3994176:-1:exon

position:3994066:-1
position: 3994066
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3994176:-1
position: 3994176
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3991559-3993272:-1:exon

position:3993272:-1
position: 3993272
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC109935059
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109935059
product: serine/arginine-rich splicing factor 5-like, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618268.1
SIO_010081: LOC109935059
subclass of: SO_0000673
so part of: LOC109935059
location: complement(join(3991559..3993272,3994066..3994176,3995184..3995257,3997942..3998011,4001382..4001486,4003732..4003802,4007627..4007776,4009365..4009651))
location: region:3991559-4009651:-1
so has part: feature:4009365-4009651:-1:exon
so has part: feature:4007627-4007776:-1:exon
so has part: feature:4003732-4003802:-1:exon
so has part: feature:4001382-4001486:-1:exon
so has part: feature:3997942-3998011:-1:exon
so has part: feature:3995184-3995257:-1:exon
so has part: feature:3994066-3994176:-1:exon
so has part: feature:3991559-3993272:-1:exon

position:4009651:-1
position: 4009651
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4009365-4009651:-1:exon

position:4009365:-1
position: 4009365
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4007627-4007776:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4003732-4003802:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4001382-4001486:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3997942-3998011:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3995184-3995257:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3994066-3994176:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3991559-3993272:-1:exon

LOC109935059
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109935059
product: serine/arginine-rich splicing factor 5-like, transcript variant X3
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618269.1
SIO_010081: LOC109935059
subclass of: SO_0000673
so part of: LOC109935059
location: complement(join(3991559..3993272,3994066..3994176,3995184..3995257,3997942..3998011,4001382..4001486,4003732..4003802,4007627..4007776,4009039..4009279))
location: region:3991559-4009279:-1
so has part: feature:4009039-4009279:-1:exon
so has part: feature:4007627-4007776:-1:exon
so has part: feature:4003732-4003802:-1:exon
so has part: feature:4001382-4001486:-1:exon
so has part: feature:3997942-3998011:-1:exon
so has part: feature:3995184-3995257:-1:exon
so has part: feature:3994066-3994176:-1:exon
so has part: feature:3991559-3993272:-1:exon

position:4009279:-1
position: 4009279
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4009039-4009279:-1:exon

position:4009039:-1
position: 4009039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4007627-4007776:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4003732-4003802:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4001382-4001486:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3997942-3998011:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3995184-3995257:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3994066-3994176:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3991559-3993272:-1:exon

LOC109935059
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109935059
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/arginine-rich splicing factor 5-like
translation: MNGCRVFIGRLSPQVRERDVEKFFKGYGRIREIDLKRGFGFVEFDDARDADDAVYELNGKELFRERITVELAKAPPRRGGGRFGGRFNYYRPRSERSSGLRYGPPVRTDYRLIVKNLSSRVSWQDLKDIMRQAGEVTFTDAHRVHNNEGIVEFASYSDLKNAIDKLDGKEISGRRVQLIEEPRRHRSWTRSRSRSSSRSRSYKGSRSASRSASRSPSRSRSRSRSRSPARDTKRQRNESRSLSRSPEVKRRRKPTQSRSRSNSPVKSTRSWSGSREQSPVNSAE
SIO_010081: LOC109935059
subclass of: SO_0000673
so part of: LOC109935059
location: complement(join(3992975..3993272,3994066..3994176,3995184..3995257,3997942..3998011,4001382..4001486,4003732..4003802,4007627..4007752))
location: region:3992975-4007752:-1
so has part: feature:4007627-4007752:-1:exon
so has part: feature:4003732-4003802:-1:exon
so has part: feature:4001382-4001486:-1:exon
so has part: feature:3997942-3998011:-1:exon
so has part: feature:3995184-3995257:-1:exon
so has part: feature:3994066-3994176:-1:exon
so has part: feature:3992975-3993272:-1:exon

XP_020389337.1
type: Protein
SIO_000068: ncbiprotein

position:3992975:-1
position: 3992975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4007752:-1
position: 4007752
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4007627-4007752:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4003732-4003802:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4001382-4001486:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3997942-3998011:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3995184-3995257:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3994066-3994176:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3992975-3993272:-1:exon

LOC109935059
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109935059
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/arginine-rich splicing factor 5-like
translation: MNGCRVFIGRLSPQVRERDVEKFFKGYGRIREIDLKRGFGFVEFDDARDADDAVYELNGKELFRERITVELAKAPPRRGGGRFGGRFNYYRPRSERSSGLRYGPPVRTDYRLIVKNLSSRVSWQDLKDIMRQAGEVTFTDAHRVHNNEGIVEFASYSDLKNAIDKLDGKEISGRRVQLIEEPRRHRSWTRSRSRSSSRSRSYKGSRSASRSASRSPSRSRSRSRSRSPARDTKRQRNESRSLSRSPEVKRRRKPTQSRSRSNSPVKSTRSWSGSREQSPVNSAE
SIO_010081: LOC109935059
subclass of: SO_0000673
so part of: LOC109935059
location: complement(join(3992975..3993272,3994066..3994176,3995184..3995257,3997942..3998011,4001382..4001486,4003732..4003802,4007627..4007752))
location: region:3992975-4007752:-1
so has part: feature:4007627-4007752:-1:exon
so has part: feature:4003732-4003802:-1:exon
so has part: feature:4001382-4001486:-1:exon
so has part: feature:3997942-3998011:-1:exon
so has part: feature:3995184-3995257:-1:exon
so has part: feature:3994066-3994176:-1:exon
so has part: feature:3992975-3993272:-1:exon

XP_048474225.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4007627-4007752:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4003732-4003802:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4001382-4001486:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3997942-3998011:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3995184-3995257:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3994066-3994176:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3992975-3993272:-1:exon

LOC109935059
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109935059
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/arginine-rich splicing factor 5-like
translation: MNGCRVFIGRLSPQVRERDVEKFFKGYGRIREIDLKRGFGFVEFDDARDADDAVYELNGKELFRERITVELAKAPPRRGGGRFGGRFNYYRPRSERSSGLRYGPPVRTDYRLIVKNLSSRVSWQDLKDIMRQAGEVTFTDAHRVHNNEGIVEFASYSDLKNAIDKLDGKEISGRRVQLIEEPRRHRSWTRSRSRSSSRSRSYKGSRSASRSASRSPSRSRSRSRSRSPARDTKRQRNESRSLSRSPEVKRRRKPTQSRSRSNSPVKSTRSWSGSREQSPVNSAE
SIO_010081: LOC109935059
subclass of: SO_0000673
so part of: LOC109935059
location: complement(join(3992975..3993272,3994066..3994176,3995184..3995257,3997942..3998011,4001382..4001486,4003732..4003802,4007627..4007752))
location: region:3992975-4007752:-1
so has part: feature:4007627-4007752:-1:exon
so has part: feature:4003732-4003802:-1:exon
so has part: feature:4001382-4001486:-1:exon
so has part: feature:3997942-3998011:-1:exon
so has part: feature:3995184-3995257:-1:exon
so has part: feature:3994066-3994176:-1:exon
so has part: feature:3992975-3993272:-1:exon

XP_048474226.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4007627-4007752:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4003732-4003802:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4001382-4001486:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3997942-3998011:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3995184-3995257:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3994066-3994176:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3992975-3993272:-1:exon

ccdc97
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: ccdc97
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4022345..4038391
location: region:4022345-4038391:1
so has part: feature:4022345-4038391:1:exon
subclass of: SO_0000010

109935058
type: Gene
SIO_000068: ncbigene

position:4022345:1
position: 4022345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4038391:1
position: 4038391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4022345-4038391:1:exon

ccdc97
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: ccdc97
product: coiled-coil domain containing 97
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_020533747.2
SIO_010081: ccdc97
subclass of: SO_0000673
so part of: ccdc97
location: join(4022345..4022554,4023234..4023797,4030192..4030437,4031939..4032068,4034017..4038391)
location: region:4022345-4038391:1
so has part: feature:4022345-4022554:1:exon
so has part: feature:4023234-4023797:1:exon
so has part: feature:4030192-4030437:1:exon
so has part: feature:4031939-4032068:1:exon
so has part: feature:4034017-4038391:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4022345-4022554:1:exon

position:4022554:1
position: 4022554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4023234-4023797:1:exon

position:4023234:1
position: 4023234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4023797:1
position: 4023797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4030192-4030437:1:exon

position:4030192:1
position: 4030192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4030437:1
position: 4030437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4031939-4032068:1:exon

position:4031939:1
position: 4031939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4032068:1
position: 4032068
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4034017-4038391:1:exon

position:4034017:1
position: 4034017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ccdc97
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: ccdc97
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: coiled-coil domain-containing protein 97
translation: MAGSQTQDLLEDIPKVSDPSADSVTQEANSQMEGMLTVSTEGHVTPSDVEEQIKSSVPTSTGFEIGDAARMMNEPHDQQQEDAMNASLNSMFHTIASSKAQIKSQQKDEPDLMYDQKLDIIKDLFWCKPVVFLERFHKIIKEEHLVCFNHLADNYEVTFYCKEIRKSSMKKTARTNVRNKRYAALQQLIKDGEYFSDEQMRTRDPLLYQQYIRQYMTEEELLAENSKNLSNAMCLSDLLMSTYQEKIVQERLQWQKEREDACVEEEEDDEEEDDDTESKAADWIPSDDERSMLREEFVSRMYQRFLDGEDRDFDYSTVDDNPDFDNLDIISRDEEERYFDEEEPVEVEDMEMDKD
SIO_010081: ccdc97
subclass of: SO_0000673
so part of: ccdc97
location: join(4022548..4022554,4023234..4023797,4030192..4030437,4031939..4032068,4034017..4034137)
location: region:4022548-4034137:1
so has part: feature:4022548-4022554:1:exon
so has part: feature:4023234-4023797:1:exon
so has part: feature:4030192-4030437:1:exon
so has part: feature:4031939-4032068:1:exon
so has part: feature:4034017-4034137:1:exon

XP_020389336.2
type: Protein
SIO_000068: ncbiprotein

position:4022548:1
position: 4022548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4034137:1
position: 4034137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4022548-4022554:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4023234-4023797:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4030192-4030437:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4031939-4032068:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4034017-4034137:1:exon

LOC125487314
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC125487314
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4039975..4053840
location: region:4039975-4053840:1
so has part: feature:4039975-4053840:1:exon
subclass of: SO_0000011

125487314
type: Gene
SIO_000068: ncbigene

position:4039975:1
position: 4039975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4053840:1
position: 4053840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4039975-4053840:1:exon

LOC125487314
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 259920
nc RNA class: lncRNA
gene: LOC125487314
product: uncharacterized LOC125487314
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_007265805.1
SIO_010081: LOC125487314
subclass of: SO_0000673
so part of: LOC125487314
location: join(4039975..4040090,4051773..4051860,4053773..4053840)
location: region:4039975-4053840:1
so has part: feature:4039975-4040090:1:exon
so has part: feature:4051773-4051860:1:exon
so has part: feature:4053773-4053840:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4039975-4040090:1:exon

position:4040090:1
position: 4040090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4051773-4051860:1:exon

position:4051773:1
position: 4051773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4051860:1
position: 4051860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4053773-4053840:1:exon

position:4053773:1
position: 4053773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109935057
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC109935057
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <4075264..4079202
location: region:4075264-4079202:1
so has part: feature:4075264-4079202:1:exon
subclass of: SO_0000010

109935057
type: Gene
SIO_000068: ncbigene

position:4075264:1
position: 4075264
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:4079202:1
position: 4079202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4075264-4079202:1:exon

LOC109935057
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109935057
product: tetratricopeptide repeat protein 9A-like
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618200.1
SIO_010081: LOC109935057
subclass of: SO_0000673
so part of: LOC109935057
location: join(<4075264..4075489,4076724..4076806,4078964..4079202)
location: region:4075264-4079202:1
so has part: feature:4075264-4075489:1:exon
so has part: feature:4076724-4076806:1:exon
so has part: feature:4078964-4079202:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4075264-4075489:1:exon

position:4075489:1
position: 4075489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4076724-4076806:1:exon

position:4076724:1
position: 4076724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4076806:1
position: 4076806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4078964-4079202:1:exon

position:4078964:1
position: 4078964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109935057
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109935057
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tetratricopeptide repeat protein 9A-like
translation: NVDVSQSDSHFSLPACLLQSELVNYERVKEYCLKILGKHKDNFKAMYRAGIAFYHLGDCESALQYLKEAKDREPTDTNVFRYIQLTEIKMNRSNQREQEGTKEENGPNRQKMSKVKWTIKGE
SIO_010081: LOC109935057
subclass of: SO_0000673
so part of: LOC109935057
location: join(<4075264..4075489,4076724..4076806,4078964..4079023)
location: region:4075264-4079023:1
so has part: feature:4075264-4075489:1:exon
so has part: feature:4076724-4076806:1:exon
so has part: feature:4078964-4079023:1:exon

XP_048474157.1
type: Protein
SIO_000068: ncbiprotein

position:4079023:1
position: 4079023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4075264-4075489:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4076724-4076806:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4078964-4079023:1:exon

LOC109924783
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC109924783
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4107131..4392319)
location: region:4107131-4392319:-1
so has part: feature:4107131-4392319:-1:exon
subclass of: SO_0000010

109924783
type: Gene
SIO_000068: ncbigene

position:4107131:-1
position: 4107131
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4392319:-1
position: 4392319
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4107131-4392319:-1:exon

LOC109924783
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109924783
product: mitogen-activated protein kinase kinase kinase 10-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 18 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_048618201.1
SIO_010081: LOC109924783
subclass of: SO_0000673
so part of: LOC109924783
location: complement(join(4107131..4107416,4109584..4109722,4112380..4112502,4113869..4114109,4117713..4117888,4118016..4118164,4119446..4119626,4391174..4392319))
location: region:4107131-4392319:-1
so has part: feature:4391174-4392319:-1:exon
so has part: feature:4119446-4119626:-1:exon
so has part: feature:4118016-4118164:-1:exon
so has part: feature:4117713-4117888:-1:exon
so has part: feature:4113869-4114109:-1:exon
so has part: feature:4112380-4112502:-1:exon
so has part: feature:4109584-4109722:-1:exon
so has part: feature:4107131-4107416:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4391174-4392319:-1:exon

position:4391174:-1
position: 4391174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4119446-4119626:-1:exon

position:4119446:-1
position: 4119446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4119626:-1
position: 4119626
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4118016-4118164:-1:exon

position:4118016:-1
position: 4118016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4118164:-1
position: 4118164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4117713-4117888:-1:exon

position:4117713:-1
position: 4117713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4117888:-1
position: 4117888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4113869-4114109:-1:exon

position:4113869:-1
position: 4113869
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4114109:-1
position: 4114109
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4112380-4112502:-1:exon

position:4112380:-1
position: 4112380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4112502:-1
position: 4112502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4109584-4109722:-1:exon

position:4109584:-1
position: 4109584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4109722:-1
position: 4109722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4107131-4107416:-1:exon

position:4107416:-1
position: 4107416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC109924783
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109924783
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mitogen-activated protein kinase kinase kinase 10-like
translation: MRKPGCSTMEPAAMSYSKSPAAEAATCNGDHQQESPSLQAPGGCRLLLPKPPPPPPASAAAAAPGSRSFWTAVFDYESTADEELTLRRGDVVELLSKDSHVSGDEGWWTGKIQDKVGIFPSNYVSSHPAYSGFQGGEEYPLPPVIDFTELLLEEIIGVGGFGKVYKGTWGRDEVAVKAARQDPDEDISVTADNVRKEARLFGMLRHPNIILLKGVCLKEPNLCLVMEYARGGALNRALAGRKVPPHVLVNWAVQIARGMNYLHNEAVVPVIHRDLKSSNILILEKADGDDLTNKTLKITDFGLAREWHRTTKMSAAGTYAWMAPEVIKLSLFSKNSDVWSFGVLLWELLTGEAPYREIDGLAVAYGVAVNKLTLPIPSTCPEPFGKLMEDCWNADAHSRPSFSSILAQLVEIEQSSLFEMPLESFHSLQEDWKLEIQQMFNELRTKEKELRSWEEELSRAAIQQRNHEEVLRRREQELAEREIDIVERELNIIMRQLYQEKPKVKKRKGNFKKSRLKLKDGNRISLPSGFEHKITVQASPTVDKWKGQATDGSSPPGSPIMIPRLRAIRLTPGEGSQTWGRSAVYKREEFEGHKKKGRTWGPSSTQQKERLGGEDRLRCLGDGSKFWSSSAPSLGKTPRHIPITMGFASLTEMGKYRTPFRESVKEGEGGRQKSAFPRYPPPPPPQYPPGRLGISAINLNVLIWRNEERK
SIO_010081: LOC109924783
subclass of: SO_0000673
so part of: LOC109924783
location: complement(join(4107131..4107416,4109584..4109722,4112380..4112502,4113869..4114109,4117713..4117888,4118016..4118164,4119446..4119626,4391174..4392011))
location: region:4107131-4392011:-1
so has part: feature:4391174-4392011:-1:exon
so has part: feature:4119446-4119626:-1:exon
so has part: feature:4118016-4118164:-1:exon
so has part: feature:4117713-4117888:-1:exon
so has part: feature:4113869-4114109:-1:exon
so has part: feature:4112380-4112502:-1:exon
so has part: feature:4109584-4109722:-1:exon
so has part: feature:4107131-4107416:-1:exon

XP_048474158.1
type: Protein
SIO_000068: ncbiprotein

position:4392011:-1
position: 4392011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4391174-4392011:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4119446-4119626:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4118016-4118164:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4117713-4117888:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4113869-4114109:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4112380-4112502:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4109584-4109722:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4107131-4107416:-1:exon

LOC109935467
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC109935467
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4206825..4387796
location: region:4206825-4387796:1
so has part: feature:4206825-4387796:1:exon
subclass of: SO_0000010

109935467
type: Gene
SIO_000068: ncbigene

position:4206825:1
position: 4206825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4387796:1
position: 4387796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4206825-4387796:1:exon

LOC109935467
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109935467
product: signal-induced proliferation-associated 1 like 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 27 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_048618382.1
SIO_010081: LOC109935467
subclass of: SO_0000673
so part of: LOC109935467
location: join(4206825..4206900,4285283..4285393,4330272..4332042,4336738..4336868,4337924..4338112,4339440..4339614,4340705..4340808,4345439..4345596,4347294..4347870,4349749..4350023,4364983..4365228,4368672..4368818,4381175..4381308,4385184..4385302,4387344..4387796)
location: region:4206825-4387796:1
so has part: feature:4206825-4206900:1:exon
so has part: feature:4285283-4285393:1:exon
so has part: feature:4330272-4332042:1:exon
so has part: feature:4336738-4336868:1:exon
so has part: feature:4337924-4338112:1:exon
so has part: feature:4339440-4339614:1:exon
so has part: feature:4340705-4340808:1:exon
so has part: feature:4345439-4345596:1:exon
so has part: feature:4347294-4347870:1:exon
so has part: feature:4349749-4350023:1:exon
so has part: feature:4364983-4365228:1:exon
so has part: feature:4368672-4368818:1:exon
so has part: feature:4381175-4381308:1:exon
so has part: feature:4385184-4385302:1:exon
so has part: feature:4387344-4387796:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4206825-4206900:1:exon

position:4206900:1
position: 4206900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4285283-4285393:1:exon

position:4285283:1
position: 4285283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4285393:1
position: 4285393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4330272-4332042:1:exon

position:4330272:1
position: 4330272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4332042:1
position: 4332042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4336738-4336868:1:exon

position:4336738:1
position: 4336738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4336868:1
position: 4336868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4337924-4338112:1:exon

position:4337924:1
position: 4337924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4338112:1
position: 4338112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4339440-4339614:1:exon

position:4339440:1
position: 4339440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4339614:1
position: 4339614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4340705-4340808:1:exon

position:4340705:1
position: 4340705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4340808:1
position: 4340808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4345439-4345596:1:exon

position:4345439:1
position: 4345439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4345596:1
position: 4345596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4347294-4347870:1:exon

position:4347294:1
position: 4347294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4347870:1
position: 4347870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:4349749-4350023:1:exon

position:4349749:1
position: 4349749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4350023:1
position: 4350023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:4364983-4365228:1:exon

position:4364983:1
position: 4364983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4365228:1
position: 4365228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:4368672-4368818:1:exon

position:4368672:1
position: 4368672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4368818:1
position: 4368818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:4381175-4381308:1:exon

position:4381175:1
position: 4381175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4381308:1
position: 4381308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:4385184-4385302:1:exon

position:4385184:1
position: 4385184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4385302:1
position: 4385302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:4387344-4387796:1:exon

position:4387344:1
position: 4387344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109935467
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109935467
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: signal-induced proliferation-associated 1-like protein 3
translation: MTSYRPVQNEKVEVGGMVISGVDFLEGTNTCDYYASPFRVQNGNICSLGDNVPRANSTPAMPKMGVRARIADWPPKRDVTKDAARDLGGSMVDTEFARFHSGQYCLNYDNASHRPQARGLHHTPQGKSKEAEFQGHWPRSPAKMFAPLRVRSNSEVTLNEHDAEGALDLKGSGMLPLREYGSTSSIDVNGVSSESFFDMLKEFKNEKIDQRSSVPENLKKLLRADVSMASNLNLAGNSKTDDSQSESSQRDELSSTCKDREKSRKKPSRNESGESILKKLRSNKSEHESGRSSSDNEDNKSQDSIKPWVCPKSFAHFDVQSILFDLNEVVSNRNYVPYRRNTTTGASAASAASLAVSRSHALGGPDSNFTSTEEVNGKENLEPDLGDSNCNDLLLNCPHFRNETGGICEHNISLSKASMTADCEGGFPKVVWNPYCTNASVSELEVPKERQLRQERLKQFSIEHMDRGAKYYQDYFHGKEHWNYFGVDEKLGPVAVSIKREKLEDSKEHGLQYVYRIIFRTSELITLRGAILEDAVPSTSKHGTVRGLLLKEVLESVIPELNIQCLRLAFSTVKVTEQLLKLDEQGLSRKHKVGILYCLAGQGTEEEMYNNEEAGPAFEEFLEQLGEKVLLKGFTKYAAQLDTKTGSTGTHSLYTTYQDYEIMFHVSTMLPYTPNNRQQLLRKRHIGNDIVTIIFQEPGALPFTPKTVRSHFQHVFVIVRVHNPCTENVCYSVAVTRSKDVPLFGPPIPDGFFFGKSDVFRDFLLAKVINGENAAHKSEKFHAMATRTRHEYLKDLAENSVTNTPVESAGKFNLILLTTKKKEKTKPRVGAELYSAGAITWRVYAQDYSQGIEVECILGISNEFVVVIEQGTKEMVFNCFSGDVIGWTPDSSTIKIFHGRGDYILVRVLEENVNDIKEIVQRLKIVTEGCETIDMTLRRNGLGQLGFHVKYDGTVAEVEEYGFAWQAGLRQGSRLVEICKVAIITLTHDQMIDLLKTSVTVKVVIILPHEDGSPRRGCSELYKMHTMDMKGENDNIPHGLRPPYRTNALQWSSPTIHSASLSQRWTGSTHNPISNWSQTSKQQGVPVAYSDSQAKNKRPVSYPETLYSTASTAAVERGQPFRNPSGSFSSPASGGILSSRQKAINDRFGGGASQRPVAPYEYHNRDDVMSSGDSSSGGLTSQDSTIERNKNDPVWHVPTMPKVYSPSGNNINKRLPRQELAGKDSPNRHSKGDAHYSSQSSSNTLSSNASSSHSDERWSDHMEVDLETSAKGASSDSGIDTTLHASSSFASGTATTKSARPAPQREKPQKPMQTSATYCGLQEYNSRVFDRTPPHLERRRDSSPTLGTNGQNKGYRMKICGPSNNSSTSFSVNSNENVHLR
SIO_010081: LOC109935467
subclass of: SO_0000673
so part of: LOC109935467
location: join(4330605..4332042,4336738..4336868,4337924..4338112,4339440..4339614,4340705..4340808,4345439..4345596,4347294..4347870,4349749..4350023,4364983..4365228,4368672..4368818,4381175..4381308,4385184..4385302,4387344..4387796)
location: region:4330605-4387796:1
so has part: feature:4330605-4332042:1:exon
so has part: feature:4336738-4336868:1:exon
so has part: feature:4337924-4338112:1:exon
so has part: feature:4339440-4339614:1:exon
so has part: feature:4340705-4340808:1:exon
so has part: feature:4345439-4345596:1:exon
so has part: feature:4347294-4347870:1:exon
so has part: feature:4349749-4350023:1:exon
so has part: feature:4364983-4365228:1:exon
so has part: feature:4368672-4368818:1:exon
so has part: feature:4381175-4381308:1:exon
so has part: feature:4385184-4385302:1:exon
so has part: feature:4387344-4387796:1:exon

XP_048474339.1
type: Protein
SIO_000068: ncbiprotein

position:4330605:1
position: 4330605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4330605-4332042:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4336738-4336868:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4337924-4338112:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4339440-4339614:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4340705-4340808:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4345439-4345596:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4347294-4347870:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4349749-4350023:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4364983-4365228:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4368672-4368818:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4381175-4381308:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4385184-4385302:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4387344-4387796:1:exon

LOC125487312
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC125487312
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4404815..4415533)
location: region:4404815-4415533:-1
so has part: feature:4404815-4415533:-1:exon
subclass of: SO_0000011

125487312
type: Gene
SIO_000068: ncbigene

position:4404815:-1
position: 4404815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4415533:-1
position: 4415533
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4404815-4415533:-1:exon

LOC125487312
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 259920
nc RNA class: lncRNA
gene: LOC125487312
product: uncharacterized LOC125487312
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_007265803.1
SIO_010081: LOC125487312
subclass of: SO_0000673
so part of: LOC125487312
location: complement(join(4404815..4408341,4410204..4410285,4415383..4415533))
location: region:4404815-4415533:-1
so has part: feature:4415383-4415533:-1:exon
so has part: feature:4410204-4410285:-1:exon
so has part: feature:4404815-4408341:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4415383-4415533:-1:exon

position:4415383:-1
position: 4415383
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4410204-4410285:-1:exon

position:4410204:-1
position: 4410204
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4410285:-1
position: 4410285
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4404815-4408341:-1:exon

position:4408341:-1
position: 4408341
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

dpf1
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: dpf1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4416285..4459927)
location: region:4416285-4459927:-1
so has part: feature:4416285-4459927:-1:exon
subclass of: SO_0000010

125487287
type: Gene
SIO_000068: ncbigene

position:4416285:-1
position: 4416285
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4459927:-1
position: 4459927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4416285-4459927:-1:exon

dpf1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: dpf1
product: double PHD fingers 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_048618202.1
SIO_010081: dpf1
subclass of: SO_0000673
so part of: dpf1
location: complement(join(4416285..4416301,4418410..4418538,4438150..4438281,4438850..4438928,4442235..4442324,4444607..4444734,4453138..4453245,4459774..4459927))
location: region:4416285-4459927:-1
so has part: feature:4459774-4459927:-1:exon
so has part: feature:4453138-4453245:-1:exon
so has part: feature:4444607-4444734:-1:exon
so has part: feature:4442235-4442324:-1:exon
so has part: feature:4438850-4438928:-1:exon
so has part: feature:4438150-4438281:-1:exon
so has part: feature:4418410-4418538:-1:exon
so has part: feature:4416285-4416301:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4459774-4459927:-1:exon

position:4459774:-1
position: 4459774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4453138-4453245:-1:exon

position:4453138:-1
position: 4453138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4453245:-1
position: 4453245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4444607-4444734:-1:exon

position:4444607:-1
position: 4444607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4444734:-1
position: 4444734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4442235-4442324:-1:exon

position:4442235:-1
position: 4442235
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4442324:-1
position: 4442324
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4438850-4438928:-1:exon

position:4438850:-1
position: 4438850
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4438928:-1
position: 4438928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4438150-4438281:-1:exon

position:4438150:-1
position: 4438150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4438281:-1
position: 4438281
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4418410-4418538:-1:exon

position:4418410:-1
position: 4418410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4418538:-1
position: 4418538
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4416285-4416301:-1:exon

position:4416301:-1
position: 4416301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

dpf1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: dpf1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein neuro-d4
translation: MRLPFLDSQTGVAQNNCYIWMEKTHRGPGLAPGQLYTYPARCWRKKRRLNILEDPRLRPCEIKLDTEVALKKEGLLPEGPALEALLCADAAEKKAEMKDEESISECQRILASDFPHEIEADDLEEDTPKRKNKTKGRTCGIGGMRKRQEPTSLEDRDKPYVCDICGKRYKNRPGLSYHYTHTHLAEEEGEDELERHTLPFHRKNNHKPRKAPDGTIIPNTYCDFCLGGISGNKKTGCPEDLMSCADCGRSGPCCL
SIO_010081: dpf1
subclass of: SO_0000673
so part of: dpf1
location: complement(join(4416285..4416301,4418410..4418538,4438150..4438281,4438850..4438928,4442235..4442324,4444607..4444734,4453138..4453245,4459774..4459858))
location: region:4416285-4459858:-1
so has part: feature:4459774-4459858:-1:exon
so has part: feature:4453138-4453245:-1:exon
so has part: feature:4444607-4444734:-1:exon
so has part: feature:4442235-4442324:-1:exon
so has part: feature:4438850-4438928:-1:exon
so has part: feature:4438150-4438281:-1:exon
so has part: feature:4418410-4418538:-1:exon
so has part: feature:4416285-4416301:-1:exon

XP_048474159.1
type: Protein
SIO_000068: ncbiprotein

position:4459858:-1
position: 4459858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4459774-4459858:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4453138-4453245:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4444607-4444734:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4442235-4442324:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4438850-4438928:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4438150-4438281:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4418410-4418538:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4416285-4416301:-1:exon

LOC109925892
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC109925892
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4491649..4498367
location: region:4491649-4498367:1
so has part: feature:4491649-4498367:1:exon
subclass of: SO_0000011

109925892
type: Gene
SIO_000068: ncbigene

position:4491649:1
position: 4491649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4498367:1
position: 4498367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4491649-4498367:1:exon

LOC109925892
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 259920
nc RNA class: lncRNA
gene: LOC109925892
product: uncharacterized LOC109925892
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_007265766.1
SIO_010081: LOC109925892
subclass of: SO_0000673
so part of: LOC109925892
location: join(4491649..4491751,4494812..4494953,4498293..4498367)
location: region:4491649-4498367:1
so has part: feature:4491649-4491751:1:exon
so has part: feature:4494812-4494953:1:exon
so has part: feature:4498293-4498367:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4491649-4491751:1:exon

position:4491751:1
position: 4491751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4494812-4494953:1:exon

position:4494812:1
position: 4494812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4494953:1
position: 4494953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4498293-4498367:1:exon

position:4498293:1
position: 4498293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125487288
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC125487288
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <4512453..4521389
location: region:4512453-4521389:1
so has part: feature:4512453-4521389:1:exon
subclass of: SO_0000010

125487288
type: Gene
SIO_000068: ncbigene

position:4512453:1
position: 4512453
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:4521389:1
position: 4521389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4512453-4521389:1:exon

LOC125487288
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC125487288
product: atypical kinase COQ8B, mitochondrial-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 2 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_048618203.1
SIO_010081: LOC125487288
subclass of: SO_0000673
so part of: LOC125487288
location: join(<4512453..4512824,4513076..4513142,4513359..4513436,4514885..4515007,4517479..4517564,4518587..4518727,4519894..4519975,4520400..4521389)
location: region:4512453-4521389:1
so has part: feature:4512453-4512824:1:exon
so has part: feature:4513076-4513142:1:exon
so has part: feature:4513359-4513436:1:exon
so has part: feature:4514885-4515007:1:exon
so has part: feature:4517479-4517564:1:exon
so has part: feature:4518587-4518727:1:exon
so has part: feature:4519894-4519975:1:exon
so has part: feature:4520400-4521389:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4512453-4512824:1:exon

position:4512824:1
position: 4512824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4513076-4513142:1:exon

position:4513076:1
position: 4513076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4513142:1
position: 4513142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4513359-4513436:1:exon

position:4513359:1
position: 4513359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4513436:1
position: 4513436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4514885-4515007:1:exon

position:4514885:1
position: 4514885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4515007:1
position: 4515007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4517479-4517564:1:exon

position:4517479:1
position: 4517479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4517564:1
position: 4517564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4518587-4518727:1:exon

position:4518587:1
position: 4518587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4518727:1
position: 4518727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4519894-4519975:1:exon

position:4519894:1
position: 4519894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4519975:1
position: 4519975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4520400-4521389:1:exon

position:4520400:1
position: 4520400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125487288
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC125487288
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: atypical kinase COQ8B, mitochondrial-like
translation: FALVFQRGVQAFKEHPPFDGEDEASRWNLASEMAPEYSGSAIGAGSWVMADSWWAGSSSLSGDHLTANGSSGGAGRSFLFTAAAPGLGLTRGFHDEASVRGLTPEDIAKARNTKPSRPKGTRPKISERARERKVPSSRISRLANFGGLAVSLGIGALAEVAKKSVTGNQMSKENKGLLDSSPFLSEANAERIVDTLCKVRGAALKIGQMLSIQDSSFINPQLQKIFERVRQSADFMPAWQTMKVLDEELGPHWRDKLAEFEEKPFAAASIGQVHHGELQDGREVAIKIQYPGIARSIKSDVENLLSLLKMSIPLPEGLFAESGIGVLKRELEWECDYVREAACARRFRYNGLVVLRSHPQMRSLKS
SIO_010081: LOC125487288
subclass of: SO_0000673
so part of: LOC125487288
location: join(<4512453..4512824,4513076..4513142,4513359..4513436,4514885..4515007,4517479..4517564,4518587..4518727,4519894..4519975,4520400..4520551)
location: region:4512453-4520551:1
so has part: feature:4512453-4512824:1:exon
so has part: feature:4513076-4513142:1:exon
so has part: feature:4513359-4513436:1:exon
so has part: feature:4514885-4515007:1:exon
so has part: feature:4517479-4517564:1:exon
so has part: feature:4518587-4518727:1:exon
so has part: feature:4519894-4519975:1:exon
so has part: feature:4520400-4520551:1:exon

XP_048474160.1
type: Protein
SIO_000068: ncbiprotein

position:4520551:1
position: 4520551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4512453-4512824:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4513076-4513142:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4513359-4513436:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4514885-4515007:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4517479-4517564:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4518587-4518727:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4519894-4519975:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4520400-4520551:1:exon

si:ch211-11n16.2
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: si:ch211-11n16.2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4534841..4554588)
location: region:4534841-4554588:-1
so has part: feature:4534841-4554588:-1:exon
subclass of: SO_0000010

109938103
type: Gene
SIO_000068: ncbigene

position:4534841:-1
position: 4534841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4554588:-1
position: 4554588
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4534841-4554588:-1:exon

si:ch211-11n16.2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: si:ch211-11n16.2
product: zinc finger FYVE domain-containing protein 1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_020536565.2
SIO_010081: si:ch211-11n16.2
subclass of: SO_0000673
so part of: si:ch211-11n16.2
location: complement(join(4534841..4537947,4538926..4539036,4540906..4541086,4542418..4542588,4546261..4546378,4547234..4547331,4548298..4548406,4549627..4549733,4551152..4551369,4552491..4552995,4554547..4554588))
location: region:4534841-4554588:-1
so has part: feature:4554547-4554588:-1:exon
so has part: feature:4552491-4552995:-1:exon
so has part: feature:4551152-4551369:-1:exon
so has part: feature:4549627-4549733:-1:exon
so has part: feature:4548298-4548406:-1:exon
so has part: feature:4547234-4547331:-1:exon
so has part: feature:4546261-4546378:-1:exon
so has part: feature:4542418-4542588:-1:exon
so has part: feature:4540906-4541086:-1:exon
so has part: feature:4538926-4539036:-1:exon
so has part: feature:4534841-4537947:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4554547-4554588:-1:exon

position:4554547:-1
position: 4554547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4552491-4552995:-1:exon

position:4552491:-1
position: 4552491
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4552995:-1
position: 4552995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4551152-4551369:-1:exon

position:4551152:-1
position: 4551152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4551369:-1
position: 4551369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4549627-4549733:-1:exon

position:4549627:-1
position: 4549627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4549733:-1
position: 4549733
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4548298-4548406:-1:exon

position:4548298:-1
position: 4548298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4548406:-1
position: 4548406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4547234-4547331:-1:exon

position:4547234:-1
position: 4547234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4547331:-1
position: 4547331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4546261-4546378:-1:exon

position:4546261:-1
position: 4546261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4546378:-1
position: 4546378
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4542418-4542588:-1:exon

position:4542418:-1
position: 4542418
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4542588:-1
position: 4542588
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4540906-4541086:-1:exon

position:4540906:-1
position: 4540906
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4541086:-1
position: 4541086
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:4538926-4539036:-1:exon

position:4538926:-1
position: 4538926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4539036:-1
position: 4539036
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:4534841-4537947:-1:exon

position:4537947:-1
position: 4537947
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

si:ch211-11n16.2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: si:ch211-11n16.2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger FYVE domain-containing protein 1
translation: MPEMQQPNRTSPQSVPDEETFVKKLGVPGDQAVKVLSIFGNTGDGKSHTLNATFFGGREVFRTSDTQDSCTVGVWAAYEPCLGLVLLDTEGLLGATSKQDRRRRLLLKVLAVSDLVVYRTRAERLHNDLFRFLGNASRAYLRHFSHELQAASQRLGLGLSLSSLGPALIIFQETSNTKTLGGDSQTPGNAEQLLQKRFHLLGLSTEAFNSVEYVGTRTAGTPTDFSGFLEVVRQRANSTLTRSRRSPAIVYNVLKALSLRFDGEITDSRIVIDCFFPDEYFSCSSVCLSCGAHCTNSMNHLKDSVPHEAAGRCRYMHQYNNKVLICRVCYERGWEVTVNPKTSASTDSKWLGLATYVWSGYVLECPNCGIIYRSRQYWIGNQDPEASVVRPELKHVWLGMESFLGTNHNGAQRVLDGVNFVIQSVSEYSTGPSKAITSWLTDQVAPDYWRPNSQIMECHQCKKRFEDGDRKHHCRACGEGCCDACSSKSMPVPERGWGTAAVRVCDDCFRTGGNSTGKELESAREGTGLLARRITEAAQSTLDTMASAVEYPLGFVKEVARPDYWVPDHELVKCHRCAKPFSGTTAKHHCRACGLGVCGQCSPELRTVPSRGWHHPVRVCLECSENKGEL
SIO_010081: si:ch211-11n16.2
subclass of: SO_0000673
so part of: si:ch211-11n16.2
location: complement(join(4537715..4537947,4538926..4539036,4540906..4541086,4542418..4542588,4546261..4546378,4547234..4547331,4548298..4548406,4549627..4549733,4551152..4551369,4552491..4552995,4554547..4554588))
location: region:4537715-4554588:-1
so has part: feature:4554547-4554588:-1:exon
so has part: feature:4552491-4552995:-1:exon
so has part: feature:4551152-4551369:-1:exon
so has part: feature:4549627-4549733:-1:exon
so has part: feature:4548298-4548406:-1:exon
so has part: feature:4547234-4547331:-1:exon
so has part: feature:4546261-4546378:-1:exon
so has part: feature:4542418-4542588:-1:exon
so has part: feature:4540906-4541086:-1:exon
so has part: feature:4538926-4539036:-1:exon
so has part: feature:4537715-4537947:-1:exon

XP_020392154.2
type: Protein
SIO_000068: ncbiprotein

position:4537715:-1
position: 4537715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4554547-4554588:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4552491-4552995:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4551152-4551369:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4549627-4549733:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4548298-4548406:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4547234-4547331:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4546261-4546378:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4542418-4542588:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4540906-4541086:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4538926-4539036:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4537715-4537947:-1:exon

LOC109924885
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC109924885
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4638073..4649703)
location: region:4638073-4649703:-1
so has part: feature:4638073-4649703:-1:exon
subclass of: SO_0000010

109924885
type: Gene
SIO_000068: ncbigene

position:4638073:-1
position: 4638073
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4649703:-1
position: 4649703
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4638073-4649703:-1:exon

LOC109924885
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109924885
product: atypical kinase COQ8B, mitochondrial-like, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_020524856.2
SIO_010081: LOC109924885
subclass of: SO_0000673
so part of: LOC109924885
location: complement(join(4638073..4639093,4640688..4640774,4646787..4646852,4648435..4648542,4649236..4649703))
location: region:4638073-4649703:-1
so has part: feature:4649236-4649703:-1:exon
so has part: feature:4648435-4648542:-1:exon
so has part: feature:4646787-4646852:-1:exon
so has part: feature:4640688-4640774:-1:exon
so has part: feature:4638073-4639093:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4649236-4649703:-1:exon

position:4649236:-1
position: 4649236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4648435-4648542:-1:exon

position:4648435:-1
position: 4648435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4648542:-1
position: 4648542
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4646787-4646852:-1:exon

position:4646787:-1
position: 4646787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4646852:-1
position: 4646852
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4640688-4640774:-1:exon

position:4640688:-1
position: 4640688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4640774:-1
position: 4640774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4638073-4639093:-1:exon

position:4639093:-1
position: 4639093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC109924885
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109924885
product: atypical kinase COQ8B, mitochondrial-like, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618343.1
SIO_010081: LOC109924885
subclass of: SO_0000673
so part of: LOC109924885
location: complement(join(4638073..4639093,4640688..4640774,4646787..4646852,4648435..4648542,4648663..4648958))
location: region:4638073-4648958:-1
so has part: feature:4648663-4648958:-1:exon
so has part: feature:4648435-4648542:-1:exon
so has part: feature:4646787-4646852:-1:exon
so has part: feature:4640688-4640774:-1:exon
so has part: feature:4638073-4639093:-1:exon

position:4648958:-1
position: 4648958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4648663-4648958:-1:exon

position:4648663:-1
position: 4648663
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4648435-4648542:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4646787-4646852:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4640688-4640774:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4638073-4639093:-1:exon

LOC109924885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109924885
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: atypical kinase COQ8B, mitochondrial-like
translation: MQTDPNWSNFFFDEEKQKVTLLDFGASREFGKEFTDNYIEVVRAAADGNRDKVLQKSRDLKFLTGYETKVFEDAHIDAVMTLGKAFAQPESFDFGSQDTTRRIQSLIPVMLKHRLTPPPEESYSLHRKMAGSFLICSRLHAFIPCKDMFDQVYTRYFNQADQQLVKMQQCK
SIO_010081: LOC109924885
subclass of: SO_0000673
so part of: LOC109924885
location: complement(join(4638785..4639093,4640688..4640774,4646787..4646852,4648435..4648488))
location: region:4638785-4648488:-1
so has part: feature:4648435-4648488:-1:exon
so has part: feature:4646787-4646852:-1:exon
so has part: feature:4640688-4640774:-1:exon
so has part: feature:4638785-4639093:-1:exon

XP_020380445.2
type: Protein
SIO_000068: ncbiprotein

position:4638785:-1
position: 4638785
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4648488:-1
position: 4648488
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4648435-4648488:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4646787-4646852:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4640688-4640774:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4638785-4639093:-1:exon

LOC109924885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109924885
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: atypical kinase COQ8B, mitochondrial-like
translation: MQTDPNWSNFFFDEEKQKVTLLDFGASREFGKEFTDNYIEVVRAAADGNRDKVLQKSRDLKFLTGYETKVFEDAHIDAVMTLGKAFAQPESFDFGSQDTTRRIQSLIPVMLKHRLTPPPEESYSLHRKMAGSFLICSRLHAFIPCKDMFDQVYTRYFNQADQQLVKMQQCK
SIO_010081: LOC109924885
subclass of: SO_0000673
so part of: LOC109924885
location: complement(join(4638785..4639093,4640688..4640774,4646787..4646852,4648435..4648488))
location: region:4638785-4648488:-1
so has part: feature:4648435-4648488:-1:exon
so has part: feature:4646787-4646852:-1:exon
so has part: feature:4640688-4640774:-1:exon
so has part: feature:4638785-4639093:-1:exon

XP_048474300.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4648435-4648488:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4646787-4646852:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4640688-4640774:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4638785-4639093:-1:exon

LOC109936750
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC109936750
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4691930..4718207)
location: region:4691930-4718207:-1
so has part: feature:4691930-4718207:-1:exon
subclass of: SO_0000010

109936750
type: Gene
SIO_000068: ncbigene

position:4691930:-1
position: 4691930
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4718207:-1
position: 4718207
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4691930-4718207:-1:exon

LOC109936750
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: LOC109936750
product: homeobox protein otx5-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 43 Proteins
transcript id: XM_048618374.1
SIO_010081: LOC109936750
subclass of: SO_0000673
so part of: LOC109936750
location: complement(join(4691930..4692553,4700200..4700351,4718111..4718207))
location: region:4691930-4718207:-1
so has part: feature:4718111-4718207:-1:exon
so has part: feature:4700200-4700351:-1:exon
so has part: feature:4691930-4692553:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4718111-4718207:-1:exon

position:4718111:-1
position: 4718111
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4700200-4700351:-1:exon

position:4700200:-1
position: 4700200
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4700351:-1
position: 4700351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4691930-4692553:-1:exon

position:4692553:-1
position: 4692553
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC109936750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: LOC109936750
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: homeobox protein otx5-like
translation: MMSYMKQPHYAVNGLTLTGPGMDLLHSAVGYQTTPRKQRRERTTFTRAQLDILEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQNSGQAKTRPAKKKTSPTRDTSSETNASGHYSPTPAGTAGTTSSITNANVSIWSPASISPIPDPLSSSAASCMQRSAAYPMTYSQAQGYNQSYAGSSPYFSGLDCGPYLSPMHPQLPAPGAALSPLSTPTMGGHLSQSPASLSAQGYGSASLAFNTVECLDYKDQSSSWKLNFGASDCLDYKDQTSWKFQVL
SIO_010081: LOC109936750
subclass of: SO_0000673
so part of: LOC109936750
location: complement(join(4691930..4692553,4700200..4700351,4718111..4718207))
location: region:4691930-4718207:-1
so has part: feature:4718111-4718207:-1:exon
so has part: feature:4700200-4700351:-1:exon
so has part: feature:4691930-4692553:-1:exon

XP_048474331.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4718111-4718207:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4700200-4700351:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4691930-4692553:-1:exon

h3f3c
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: h3f3c
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4805266..4814358)
location: region:4805266-4814358:-1
so has part: feature:4805266-4814358:-1:exon
subclass of: SO_0000010

109936751
type: Gene
SIO_000068: ncbigene

position:4805266:-1
position: 4805266
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4814358:-1
position: 4814358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4805266-4814358:-1:exon

h3f3c
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: h3f3c
product: H3 histone, family 3C, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_020535348.2
SIO_010081: h3f3c
subclass of: SO_0000673
so part of: h3f3c
location: complement(join(4805266..4805969,4808100..4808253,4811183..4811335,4814224..4814358))
location: region:4805266-4814358:-1
so has part: feature:4814224-4814358:-1:exon
so has part: feature:4811183-4811335:-1:exon
so has part: feature:4808100-4808253:-1:exon
so has part: feature:4805266-4805969:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4814224-4814358:-1:exon

position:4814224:-1
position: 4814224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4811183-4811335:-1:exon

position:4811183:-1
position: 4811183
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4811335:-1
position: 4811335
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4808100-4808253:-1:exon

position:4808100:-1
position: 4808100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4808253:-1
position: 4808253
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4805266-4805969:-1:exon

position:4805969:-1
position: 4805969
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

h3f3c
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: h3f3c
product: H3 histone, family 3C, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618270.1
SIO_010081: h3f3c
subclass of: SO_0000673
so part of: h3f3c
location: complement(join(4805266..4805969,4808100..4808253,4811183..4811335,4813025..4813186))
location: region:4805266-4813186:-1
so has part: feature:4813025-4813186:-1:exon
so has part: feature:4811183-4811335:-1:exon
so has part: feature:4808100-4808253:-1:exon
so has part: feature:4805266-4805969:-1:exon

position:4813186:-1
position: 4813186
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4813025-4813186:-1:exon

position:4813025:-1
position: 4813025
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4811183-4811335:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4808100-4808253:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4805266-4805969:-1:exon

h3f3c
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: h3f3c
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: H3 histone, family 3C
translation: MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
SIO_010081: h3f3c
subclass of: SO_0000673
so part of: h3f3c
location: complement(join(4805841..4805969,4808100..4808253,4811183..4811310))
location: region:4805841-4811310:-1
so has part: feature:4811183-4811310:-1:exon
so has part: feature:4808100-4808253:-1:exon
so has part: feature:4805841-4805969:-1:exon

XP_020390937.1
type: Protein
SIO_000068: ncbiprotein

position:4805841:-1
position: 4805841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4811310:-1
position: 4811310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4811183-4811310:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4808100-4808253:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4805841-4805969:-1:exon

h3f3c
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: h3f3c
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: H3 histone, family 3C
translation: MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
SIO_010081: h3f3c
subclass of: SO_0000673
so part of: h3f3c
location: complement(join(4805841..4805969,4808100..4808253,4811183..4811310))
location: region:4805841-4811310:-1
so has part: feature:4811183-4811310:-1:exon
so has part: feature:4808100-4808253:-1:exon
so has part: feature:4805841-4805969:-1:exon

XP_048474227.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4811183-4811310:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4808100-4808253:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4805841-4805969:-1:exon

LOC125487296
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC125487296
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4813610..4833501
location: region:4813610-4833501:1
so has part: feature:4813610-4833501:1:exon
subclass of: SO_0000011

125487296
type: Gene
SIO_000068: ncbigene

position:4813610:1
position: 4813610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4833501:1
position: 4833501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4813610-4833501:1:exon

LOC125487296
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 259920
nc RNA class: lncRNA
gene: LOC125487296
product: uncharacterized LOC125487296
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_007265783.1
SIO_010081: LOC125487296
subclass of: SO_0000673
so part of: LOC125487296
location: join(4813610..4817041,4820875..4821168,4830097..4833501)
location: region:4813610-4833501:1
so has part: feature:4813610-4817041:1:exon
so has part: feature:4820875-4821168:1:exon
so has part: feature:4830097-4833501:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4813610-4817041:1:exon

position:4817041:1
position: 4817041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4820875-4821168:1:exon

position:4820875:1
position: 4820875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4821168:1
position: 4821168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4830097-4833501:1:exon

position:4830097:1
position: 4830097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109936749
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: LOC109936749
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4822966..4844204)
location: region:4822966-4844204:-1
so has part: feature:4822966-4844204:-1:exon
subclass of: SO_0000011

109936749
type: Gene
SIO_000068: ncbigene

position:4822966:-1
position: 4822966
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4844204:-1
position: 4844204
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4822966-4844204:-1:exon

LOC109936749
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 259920
nc RNA class: lncRNA
gene: LOC109936749
product: uncharacterized LOC109936749
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 380 long SRA reads, and 77% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XR_002261482.2
SIO_010081: LOC109936749
subclass of: SO_0000673
so part of: LOC109936749
location: complement(join(4822966..4827908,4829868..4829966,4832188..4832268,4833371..4833424,4836845..4836869,4844062..4844204))
location: region:4822966-4844204:-1
so has part: feature:4844062-4844204:-1:exon
so has part: feature:4836845-4836869:-1:exon
so has part: feature:4833371-4833424:-1:exon
so has part: feature:4832188-4832268:-1:exon
so has part: feature:4829868-4829966:-1:exon
so has part: feature:4822966-4827908:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4844062-4844204:-1:exon

position:4844062:-1
position: 4844062
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4836845-4836869:-1:exon

position:4836845:-1
position: 4836845
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4836869:-1
position: 4836869
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4833371-4833424:-1:exon

position:4833371:-1
position: 4833371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4833424:-1
position: 4833424
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4832188-4832268:-1:exon

position:4832188:-1
position: 4832188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4832268:-1
position: 4832268
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4829868-4829966:-1:exon

position:4829868:-1
position: 4829868
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4829966:-1
position: 4829966
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4822966-4827908:-1:exon

position:4827908:-1
position: 4827908
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

sirt2
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: sirt2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4875117..4911105
location: region:4875117-4911105:1
so has part: feature:4875117-4911105:1:exon
subclass of: SO_0000010

109936753
type: Gene
SIO_000068: ncbigene

position:4875117:1
position: 4875117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4911105:1
position: 4911105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4875117-4911105:1:exon

sirt2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: sirt2
product: sirtuin 2 (silent mating type information regulation 2, homolog) 2 (S. cerevisiae), transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 62 long SRA reads, 25 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XM_048618350.1
SIO_010081: sirt2
subclass of: SO_0000673
so part of: sirt2
location: join(4875117..4875309,4879403..4879440,4880917..4880965,4884327..4884443,4885766..4885807,4887336..4887442,4889028..4889084,4889678..4889746,4892468..4892597,4895481..4895540,4896450..4896505,4898934..4899010,4902933..4902984,4903995..4904062,4909380..4909446,4910234..4911103)
location: region:4875117-4911103:1
so has part: feature:4875117-4875309:1:exon
so has part: feature:4879403-4879440:1:exon
so has part: feature:4880917-4880965:1:exon
so has part: feature:4884327-4884443:1:exon
so has part: feature:4885766-4885807:1:exon
so has part: feature:4887336-4887442:1:exon
so has part: feature:4889028-4889084:1:exon
so has part: feature:4889678-4889746:1:exon
so has part: feature:4892468-4892597:1:exon
so has part: feature:4895481-4895540:1:exon
so has part: feature:4896450-4896505:1:exon
so has part: feature:4898934-4899010:1:exon
so has part: feature:4902933-4902984:1:exon
so has part: feature:4903995-4904062:1:exon
so has part: feature:4909380-4909446:1:exon
so has part: feature:4910234-4911103:1:exon

position:4911103:1
position: 4911103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4875117-4875309:1:exon

position:4875309:1
position: 4875309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4879403-4879440:1:exon

position:4879403:1
position: 4879403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4879440:1
position: 4879440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4880917-4880965:1:exon

position:4880917:1
position: 4880917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4880965:1
position: 4880965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4884327-4884443:1:exon

position:4884327:1
position: 4884327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4884443:1
position: 4884443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4885766-4885807:1:exon

position:4885766:1
position: 4885766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4885807:1
position: 4885807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4887336-4887442:1:exon

position:4887336:1
position: 4887336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4887442:1
position: 4887442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4889028-4889084:1:exon

position:4889028:1
position: 4889028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4889084:1
position: 4889084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4889678-4889746:1:exon

position:4889678:1
position: 4889678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4889746:1
position: 4889746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4892468-4892597:1:exon

position:4892468:1
position: 4892468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4892597:1
position: 4892597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:4895481-4895540:1:exon

position:4895481:1
position: 4895481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4895540:1
position: 4895540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:4896450-4896505:1:exon

position:4896450:1
position: 4896450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4896505:1
position: 4896505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:4898934-4899010:1:exon

position:4898934:1
position: 4898934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4899010:1
position: 4899010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:4902933-4902984:1:exon

position:4902933:1
position: 4902933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4902984:1
position: 4902984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:4903995-4904062:1:exon

position:4903995:1
position: 4903995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4904062:1
position: 4904062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:4909380-4909446:1:exon

position:4909380:1
position: 4909380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4909446:1
position: 4909446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:4910234-4911103:1:exon

position:4910234:1
position: 4910234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

sirt2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: sirt2
product: sirtuin 2 (silent mating type information regulation 2, homolog) 2 (S. cerevisiae), transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 57 long SRA reads, 25 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XM_048618353.1
SIO_010081: sirt2
subclass of: SO_0000673
so part of: sirt2
location: join(4875117..4875309,4879403..4879440,4880900..4880965,4884327..4884443,4885766..4885807,4887336..4887442,4889028..4889084,4889678..4889746,4892468..4892597,4895481..4895540,4896450..4896505,4898934..4899010,4902933..4902984,4903995..4904062,4909380..4909446,4910234..4911102)
location: region:4875117-4911102:1
so has part: feature:4875117-4875309:1:exon
so has part: feature:4879403-4879440:1:exon
so has part: feature:4880900-4880965:1:exon
so has part: feature:4884327-4884443:1:exon
so has part: feature:4885766-4885807:1:exon
so has part: feature:4887336-4887442:1:exon
so has part: feature:4889028-4889084:1:exon
so has part: feature:4889678-4889746:1:exon
so has part: feature:4892468-4892597:1:exon
so has part: feature:4895481-4895540:1:exon
so has part: feature:4896450-4896505:1:exon
so has part: feature:4898934-4899010:1:exon
so has part: feature:4902933-4902984:1:exon
so has part: feature:4903995-4904062:1:exon
so has part: feature:4909380-4909446:1:exon
so has part: feature:4910234-4911102:1:exon

position:4911102:1
position: 4911102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4875117-4875309:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4879403-4879440:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4880900-4880965:1:exon

position:4880900:1
position: 4880900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4884327-4884443:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4885766-4885807:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4887336-4887442:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4889028-4889084:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4889678-4889746:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4892468-4892597:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4895481-4895540:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4896450-4896505:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4898934-4899010:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4902933-4902984:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4903995-4904062:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4909380-4909446:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4910234-4911102:1:exon

sirt2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: sirt2
product: sirtuin 2 (silent mating type information regulation 2, homolog) 2 (S. cerevisiae), transcript variant X11
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 57 long SRA reads, 25 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_048618357.1
SIO_010081: sirt2
subclass of: SO_0000673
so part of: sirt2
location: join(4875258..4875309,4879403..4879451,4880900..4880965,4884327..4884443,4885766..4885807,4887336..4887442,4889028..4889084,4889678..4889746,4892468..4892597,4895481..4895540,4896450..4896505,4898934..4899010,4902933..4902984,4903995..4904062,4909380..4909446,4910234..4911104)
location: region:4875258-4911104:1
so has part: feature:4875258-4875309:1:exon
so has part: feature:4879403-4879451:1:exon
so has part: feature:4880900-4880965:1:exon
so has part: feature:4884327-4884443:1:exon
so has part: feature:4885766-4885807:1:exon
so has part: feature:4887336-4887442:1:exon
so has part: feature:4889028-4889084:1:exon
so has part: feature:4889678-4889746:1:exon
so has part: feature:4892468-4892597:1:exon
so has part: feature:4895481-4895540:1:exon
so has part: feature:4896450-4896505:1:exon
so has part: feature:4898934-4899010:1:exon
so has part: feature:4902933-4902984:1:exon
so has part: feature:4903995-4904062:1:exon
so has part: feature:4909380-4909446:1:exon
so has part: feature:4910234-4911104:1:exon

position:4875258:1
position: 4875258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4911104:1
position: 4911104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4875258-4875309:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4879403-4879451:1:exon

position:4879451:1
position: 4879451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4880900-4880965:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4884327-4884443:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4885766-4885807:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4887336-4887442:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4889028-4889084:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4889678-4889746:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4892468-4892597:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4895481-4895540:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4896450-4896505:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4898934-4899010:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4902933-4902984:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4903995-4904062:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4909380-4909446:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4910234-4911104:1:exon

sirt2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: sirt2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: NAD-dependent protein deacetylase sirtuin-2 isoform X4
translation: MSESKASEPKTDANSGSENSESQGEASESPDVSEMDFLRNLLSRSLNLREQQPKKVLEDLSIEGIAKYILNSKCEKIICMVGAGISTSAGIPDFRSPGTGLYHNLQKYHLPYPEAIFETDYFKQHPEPFFALAKELYPGQFKPTVCHYFMRMLRDKGLLLRCYTQNIDTLERVVGLQDEDLIEAHGTFHTSHCTNRACNKLYSLEWMKTQIFTKPLPKCEECDSVVKPDIIFFGDSLPQRFFPAMESDFPKCDLLIIMGTSLQVQPFASLANRVSDTTPRLLINKEITQQHDPMMALLGLGSSLDFDSSRAYRDVAYVGSCDDGCLALADLLGWKEELEDIVKKEHAMIDSKTEGAQDTGKAPAADMKKDDPEARGHEPAARQQDR
SIO_010081: sirt2
subclass of: SO_0000673
so part of: sirt2
location: join(4875294..4875309,4879403..4879440,4880917..4880965,4884327..4884443,4885766..4885807,4887336..4887442,4889028..4889084,4889678..4889746,4892468..4892597,4895481..4895540,4896450..4896505,4898934..4899010,4902933..4902984,4903995..4904062,4909380..4909446,4910234..4910389)
location: region:4875294-4910389:1
so has part: feature:4875294-4875309:1:exon
so has part: feature:4879403-4879440:1:exon
so has part: feature:4880917-4880965:1:exon
so has part: feature:4884327-4884443:1:exon
so has part: feature:4885766-4885807:1:exon
so has part: feature:4887336-4887442:1:exon
so has part: feature:4889028-4889084:1:exon
so has part: feature:4889678-4889746:1:exon
so has part: feature:4892468-4892597:1:exon
so has part: feature:4895481-4895540:1:exon
so has part: feature:4896450-4896505:1:exon
so has part: feature:4898934-4899010:1:exon
so has part: feature:4902933-4902984:1:exon
so has part: feature:4903995-4904062:1:exon
so has part: feature:4909380-4909446:1:exon
so has part: feature:4910234-4910389:1:exon

XP_048474307.1
type: Protein
SIO_000068: ncbiprotein

position:4875294:1
position: 4875294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4910389:1
position: 4910389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4875294-4875309:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4879403-4879440:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4880917-4880965:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4884327-4884443:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4885766-4885807:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4887336-4887442:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4889028-4889084:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4889678-4889746:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4892468-4892597:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4895481-4895540:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4896450-4896505:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4898934-4899010:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4902933-4902984:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4903995-4904062:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4909380-4909446:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4910234-4910389:1:exon

sirt2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: sirt2
product: sirtuin 2 (silent mating type information regulation 2, homolog) 2 (S. cerevisiae), transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 57 long SRA reads, 25 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_048618352.1
SIO_010081: sirt2
subclass of: SO_0000673
so part of: sirt2
location: join(4875396..4875469,4879403..4879440,4880917..4880965,4884327..4884443,4885766..4885807,4887336..4887442,4889028..4889084,4889678..4889746,4892468..4892597,4895481..4895540,4896450..4896505,4898934..4899010,4902933..4902984,4903995..4904062,4909380..4909446,4910234..4911104)
location: region:4875396-4911104:1
so has part: feature:4875396-4875469:1:exon
so has part: feature:4879403-4879440:1:exon
so has part: feature:4880917-4880965:1:exon
so has part: feature:4884327-4884443:1:exon
so has part: feature:4885766-4885807:1:exon
so has part: feature:4887336-4887442:1:exon
so has part: feature:4889028-4889084:1:exon
so has part: feature:4889678-4889746:1:exon
so has part: feature:4892468-4892597:1:exon
so has part: feature:4895481-4895540:1:exon
so has part: feature:4896450-4896505:1:exon
so has part: feature:4898934-4899010:1:exon
so has part: feature:4902933-4902984:1:exon
so has part: feature:4903995-4904062:1:exon
so has part: feature:4909380-4909446:1:exon
so has part: feature:4910234-4911104:1:exon

position:4875396:1
position: 4875396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4875396-4875469:1:exon

position:4875469:1
position: 4875469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4879403-4879440:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4880917-4880965:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4884327-4884443:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4885766-4885807:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4887336-4887442:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4889028-4889084:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4889678-4889746:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4892468-4892597:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4895481-4895540:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4896450-4896505:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4898934-4899010:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4902933-4902984:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4903995-4904062:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4909380-4909446:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4910234-4911104:1:exon

sirt2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: sirt2
product: sirtuin 2 (silent mating type information regulation 2, homolog) 2 (S. cerevisiae), transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 57 long SRA reads, 25 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_048618349.1
SIO_010081: sirt2
subclass of: SO_0000673
so part of: sirt2
location: join(4875434..4875469,4879403..4879451,4880900..4880965,4884327..4884443,4885766..4885807,4887336..4887442,4889028..4889084,4889678..4889746,4892468..4892597,4895481..4895540,4896450..4896505,4898934..4899010,4902933..4902984,4903995..4904062,4909380..4909446,4910234..4911104)
location: region:4875434-4911104:1
so has part: feature:4875434-4875469:1:exon
so has part: feature:4879403-4879451:1:exon
so has part: feature:4880900-4880965:1:exon
so has part: feature:4884327-4884443:1:exon
so has part: feature:4885766-4885807:1:exon
so has part: feature:4887336-4887442:1:exon
so has part: feature:4889028-4889084:1:exon
so has part: feature:4889678-4889746:1:exon
so has part: feature:4892468-4892597:1:exon
so has part: feature:4895481-4895540:1:exon
so has part: feature:4896450-4896505:1:exon
so has part: feature:4898934-4899010:1:exon
so has part: feature:4902933-4902984:1:exon
so has part: feature:4903995-4904062:1:exon
so has part: feature:4909380-4909446:1:exon
so has part: feature:4910234-4911104:1:exon

position:4875434:1
position: 4875434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4875434-4875469:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4879403-4879451:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4880900-4880965:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4884327-4884443:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4885766-4885807:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4887336-4887442:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4889028-4889084:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4889678-4889746:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4892468-4892597:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4895481-4895540:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4896450-4896505:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4898934-4899010:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4902933-4902984:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4903995-4904062:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4909380-4909446:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4910234-4911104:1:exon

sirt2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: sirt2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: NAD-dependent protein deacetylase sirtuin-2 isoform X3
translation: MGRCRVTLQNRRQTLTLEVRYLNIFSVFQNSESQGEASESPDVSEMDFLRNLLSRSLNLREQQPKKVLEDLSIEGIAKYILNSKCEKIICMVGAGISTSAGIPDFRSPGTGLYHNLQKYHLPYPEAIFETDYFKQHPEPFFALAKELYPGQFKPTVCHYFMRMLRDKGLLLRCYTQNIDTLERVVGLQDEDLIEAHGTFHTSHCTNRACNKLYSLEWMKTQIFTKPLPKCEECDSVVKPDIIFFGDSLPQRFFPAMESDFPKCDLLIIMGTSLQVQPFASLANRVSDTTPRLLINKEITQQHDPMMALLGLGSSLDFDSSRAYRDVAYVGSCDDGCLALADLLGWKEELEDIVKKEHAMIDSKTEGAQDTGKAPAADMKKDDPEARGHEPAARQQDR
SIO_010081: sirt2
subclass of: SO_0000673
so part of: sirt2
location: join(4875449..4875469,4879403..4879451,4880900..4880965,4884327..4884443,4885766..4885807,4887336..4887442,4889028..4889084,4889678..4889746,4892468..4892597,4895481..4895540,4896450..4896505,4898934..4899010,4902933..4902984,4903995..4904062,4909380..4909446,4910234..4910389)
location: region:4875449-4910389:1
so has part: feature:4875449-4875469:1:exon
so has part: feature:4879403-4879451:1:exon
so has part: feature:4880900-4880965:1:exon
so has part: feature:4884327-4884443:1:exon
so has part: feature:4885766-4885807:1:exon
so has part: feature:4887336-4887442:1:exon
so has part: feature:4889028-4889084:1:exon
so has part: feature:4889678-4889746:1:exon
so has part: feature:4892468-4892597:1:exon
so has part: feature:4895481-4895540:1:exon
so has part: feature:4896450-4896505:1:exon
so has part: feature:4898934-4899010:1:exon
so has part: feature:4902933-4902984:1:exon
so has part: feature:4903995-4904062:1:exon
so has part: feature:4909380-4909446:1:exon
so has part: feature:4910234-4910389:1:exon

XP_048474306.1
type: Protein
SIO_000068: ncbiprotein

position:4875449:1
position: 4875449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4875449-4875469:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4879403-4879451:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4880900-4880965:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4884327-4884443:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4885766-4885807:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4887336-4887442:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4889028-4889084:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4889678-4889746:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4892468-4892597:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4895481-4895540:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4896450-4896505:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4898934-4899010:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4902933-4902984:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4903995-4904062:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4909380-4909446:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4910234-4910389:1:exon

sirt2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: sirt2
product: sirtuin 2 (silent mating type information regulation 2, homolog) 2 (S. cerevisiae), transcript variant X10
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 57 long SRA reads, 25 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_048618356.1
SIO_010081: sirt2
subclass of: SO_0000673
so part of: sirt2
location: join(4876086..4876603,4879403..4879451,4880917..4880965,4884327..4884443,4885766..4885807,4887336..4887442,4889028..4889084,4889678..4889746,4892468..4892597,4895481..4895540,4896450..4896505,4898934..4899010,4902933..4902984,4903995..4904062,4909380..4909446,4910234..4911102)
location: region:4876086-4911102:1
so has part: feature:4876086-4876603:1:exon
so has part: feature:4879403-4879451:1:exon
so has part: feature:4880917-4880965:1:exon
so has part: feature:4884327-4884443:1:exon
so has part: feature:4885766-4885807:1:exon
so has part: feature:4887336-4887442:1:exon
so has part: feature:4889028-4889084:1:exon
so has part: feature:4889678-4889746:1:exon
so has part: feature:4892468-4892597:1:exon
so has part: feature:4895481-4895540:1:exon
so has part: feature:4896450-4896505:1:exon
so has part: feature:4898934-4899010:1:exon
so has part: feature:4902933-4902984:1:exon
so has part: feature:4903995-4904062:1:exon
so has part: feature:4909380-4909446:1:exon
so has part: feature:4910234-4911102:1:exon

position:4876086:1
position: 4876086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4876086-4876603:1:exon

position:4876603:1
position: 4876603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4879403-4879451:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4880917-4880965:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4884327-4884443:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4885766-4885807:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4887336-4887442:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4889028-4889084:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4889678-4889746:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4892468-4892597:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4895481-4895540:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4896450-4896505:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4898934-4899010:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4902933-4902984:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4903995-4904062:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4909380-4909446:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4910234-4911102:1:exon

sirt2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: sirt2
product: sirtuin 2 (silent mating type information regulation 2, homolog) 2 (S. cerevisiae), transcript variant X8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 57 long SRA reads, 25 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_048618354.1
SIO_010081: sirt2
subclass of: SO_0000673
so part of: sirt2
location: join(4876086..4876603,4879403..4879440,4880900..4880965,4884327..4884443,4885766..4885807,4887336..4887442,4889028..4889084,4889678..4889746,4892468..4892597,4895481..4895540,4896450..4896505,4898934..4899010,4902933..4902984,4903995..4904062,4909380..4909446,4910234..4911102)
location: region:4876086-4911102:1
so has part: feature:4876086-4876603:1:exon
so has part: feature:4879403-4879440:1:exon
so has part: feature:4880900-4880965:1:exon
so has part: feature:4884327-4884443:1:exon
so has part: feature:4885766-4885807:1:exon
so has part: feature:4887336-4887442:1:exon
so has part: feature:4889028-4889084:1:exon
so has part: feature:4889678-4889746:1:exon
so has part: feature:4892468-4892597:1:exon
so has part: feature:4895481-4895540:1:exon
so has part: feature:4896450-4896505:1:exon
so has part: feature:4898934-4899010:1:exon
so has part: feature:4902933-4902984:1:exon
so has part: feature:4903995-4904062:1:exon
so has part: feature:4909380-4909446:1:exon
so has part: feature:4910234-4911102:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4876086-4876603:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4879403-4879440:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4880900-4880965:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4884327-4884443:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4885766-4885807:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4887336-4887442:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4889028-4889084:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4889678-4889746:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4892468-4892597:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4895481-4895540:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4896450-4896505:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4898934-4899010:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4902933-4902984:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4903995-4904062:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4909380-4909446:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4910234-4911102:1:exon

sirt2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: sirt2
product: sirtuin 2 (silent mating type information regulation 2, homolog) 2 (S. cerevisiae), transcript variant X9
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 57 long SRA reads, 25 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_048618355.1
SIO_010081: sirt2
subclass of: SO_0000673
so part of: sirt2
location: join(4876086..4876531,4879403..4879440,4880900..4880965,4884327..4884443,4885766..4885807,4887336..4887442,4889028..4889084,4889678..4889746,4892468..4892597,4895481..4895540,4896450..4896505,4898934..4899010,4902933..4902984,4903995..4904062,4909380..4909446,4910234..4911102)
location: region:4876086-4911102:1
so has part: feature:4876086-4876531:1:exon
so has part: feature:4879403-4879440:1:exon
so has part: feature:4880900-4880965:1:exon
so has part: feature:4884327-4884443:1:exon
so has part: feature:4885766-4885807:1:exon
so has part: feature:4887336-4887442:1:exon
so has part: feature:4889028-4889084:1:exon
so has part: feature:4889678-4889746:1:exon
so has part: feature:4892468-4892597:1:exon
so has part: feature:4895481-4895540:1:exon
so has part: feature:4896450-4896505:1:exon
so has part: feature:4898934-4899010:1:exon
so has part: feature:4902933-4902984:1:exon
so has part: feature:4903995-4904062:1:exon
so has part: feature:4909380-4909446:1:exon
so has part: feature:4910234-4911102:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4876086-4876531:1:exon

position:4876531:1
position: 4876531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4879403-4879440:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4880900-4880965:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4884327-4884443:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4885766-4885807:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4887336-4887442:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4889028-4889084:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4889678-4889746:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4892468-4892597:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4895481-4895540:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4896450-4896505:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4898934-4899010:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4902933-4902984:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4903995-4904062:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4909380-4909446:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4910234-4911102:1:exon

sirt2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: sirt2
product: sirtuin 2 (silent mating type information regulation 2, homolog) 2 (S. cerevisiae), transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 57 long SRA reads, 25 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_048618351.1
SIO_010081: sirt2
subclass of: SO_0000673
so part of: sirt2
location: join(4876087..4876603,4879403..4879440,4880917..4880965,4884327..4884443,4885766..4885807,4887336..4887442,4889028..4889084,4889678..4889746,4892468..4892597,4895481..4895540,4896450..4896505,4898934..4899010,4902933..4902984,4903995..4904062,4909380..4909446,4910234..4911102)
location: region:4876087-4911102:1
so has part: feature:4876087-4876603:1:exon
so has part: feature:4879403-4879440:1:exon
so has part: feature:4880917-4880965:1:exon
so has part: feature:4884327-4884443:1:exon
so has part: feature:4885766-4885807:1:exon
so has part: feature:4887336-4887442:1:exon
so has part: feature:4889028-4889084:1:exon
so has part: feature:4889678-4889746:1:exon
so has part: feature:4892468-4892597:1:exon
so has part: feature:4895481-4895540:1:exon
so has part: feature:4896450-4896505:1:exon
so has part: feature:4898934-4899010:1:exon
so has part: feature:4902933-4902984:1:exon
so has part: feature:4903995-4904062:1:exon
so has part: feature:4909380-4909446:1:exon
so has part: feature:4910234-4911102:1:exon

position:4876087:1
position: 4876087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4876087-4876603:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4879403-4879440:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4880917-4880965:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4884327-4884443:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4885766-4885807:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4887336-4887442:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4889028-4889084:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4889678-4889746:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4892468-4892597:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4895481-4895540:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4896450-4896505:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4898934-4899010:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4902933-4902984:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4903995-4904062:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4909380-4909446:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4910234-4911102:1:exon

sirt2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: sirt2
product: sirtuin 2 (silent mating type information regulation 2, homolog) 2 (S. cerevisiae), transcript variant X12
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 57 long SRA reads, 25 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_048618358.1
SIO_010081: sirt2
subclass of: SO_0000673
so part of: sirt2
location: join(4876497..4876531,4879403..4879440,4880917..4880965,4884327..4884443,4885766..4885807,4887336..4887442,4889028..4889084,4889678..4889746,4892468..4892597,4895481..4895540,4896450..4896505,4898934..4899010,4902933..4902984,4903995..4904062,4909380..4909446,4910234..4911103)
location: region:4876497-4911103:1
so has part: feature:4876497-4876531:1:exon
so has part: feature:4879403-4879440:1:exon
so has part: feature:4880917-4880965:1:exon
so has part: feature:4884327-4884443:1:exon
so has part: feature:4885766-4885807:1:exon
so has part: feature:4887336-4887442:1:exon
so has part: feature:4889028-4889084:1:exon
so has part: feature:4889678-4889746:1:exon
so has part: feature:4892468-4892597:1:exon
so has part: feature:4895481-4895540:1:exon
so has part: feature:4896450-4896505:1:exon
so has part: feature:4898934-4899010:1:exon
so has part: feature:4902933-4902984:1:exon
so has part: feature:4903995-4904062:1:exon
so has part: feature:4909380-4909446:1:exon
so has part: feature:4910234-4911103:1:exon

position:4876497:1
position: 4876497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4876497-4876531:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4879403-4879440:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4880917-4880965:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4884327-4884443:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4885766-4885807:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4887336-4887442:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4889028-4889084:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4889678-4889746:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4892468-4892597:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4895481-4895540:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4896450-4896505:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4898934-4899010:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4902933-4902984:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4903995-4904062:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4909380-4909446:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4910234-4911103:1:exon

sirt2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: sirt2
product: sirtuin 2 (silent mating type information regulation 2, homolog) 2 (S. cerevisiae), transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 57 long SRA reads, 25 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_048618347.1
SIO_010081: sirt2
subclass of: SO_0000673
so part of: sirt2
location: join(4876641..4876735,4879403..4879451,4880900..4880965,4884327..4884443,4885766..4885807,4887336..4887442,4889028..4889084,4889678..4889746,4892468..4892597,4895481..4895540,4896450..4896505,4898934..4899010,4902933..4902984,4903995..4904062,4909380..4909446,4910234..4911105)
location: region:4876641-4911105:1
so has part: feature:4876641-4876735:1:exon
so has part: feature:4879403-4879451:1:exon
so has part: feature:4880900-4880965:1:exon
so has part: feature:4884327-4884443:1:exon
so has part: feature:4885766-4885807:1:exon
so has part: feature:4887336-4887442:1:exon
so has part: feature:4889028-4889084:1:exon
so has part: feature:4889678-4889746:1:exon
so has part: feature:4892468-4892597:1:exon
so has part: feature:4895481-4895540:1:exon
so has part: feature:4896450-4896505:1:exon
so has part: feature:4898934-4899010:1:exon
so has part: feature:4902933-4902984:1:exon
so has part: feature:4903995-4904062:1:exon
so has part: feature:4909380-4909446:1:exon
so has part: feature:4910234-4911105:1:exon

position:4876641:1
position: 4876641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4876641-4876735:1:exon

position:4876735:1
position: 4876735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4879403-4879451:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4880900-4880965:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4884327-4884443:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4885766-4885807:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4887336-4887442:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4889028-4889084:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4889678-4889746:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4892468-4892597:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4895481-4895540:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4896450-4896505:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4898934-4899010:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4902933-4902984:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4903995-4904062:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4909380-4909446:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4910234-4911105:1:exon

sirt2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: sirt2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: NAD-dependent protein deacetylase sirtuin-2 isoform X1
translation: MPAFRIGDSPSSLFNSEAAEFCFWCVSKLQNRRQTLTLEVRYLNIFSVFQNSESQGEASESPDVSEMDFLRNLLSRSLNLREQQPKKVLEDLSIEGIAKYILNSKCEKIICMVGAGISTSAGIPDFRSPGTGLYHNLQKYHLPYPEAIFETDYFKQHPEPFFALAKELYPGQFKPTVCHYFMRMLRDKGLLLRCYTQNIDTLERVVGLQDEDLIEAHGTFHTSHCTNRACNKLYSLEWMKTQIFTKPLPKCEECDSVVKPDIIFFGDSLPQRFFPAMESDFPKCDLLIIMGTSLQVQPFASLANRVSDTTPRLLINKEITQQHDPMMALLGLGSSLDFDSSRAYRDVAYVGSCDDGCLALADLLGWKEELEDIVKKEHAMIDSKTEGAQDTGKAPAADMKKDDPEARGHEPAARQQDR
SIO_010081: sirt2
subclass of: SO_0000673
so part of: sirt2
location: join(4876652..4876735,4879403..4879451,4880900..4880965,4884327..4884443,4885766..4885807,4887336..4887442,4889028..4889084,4889678..4889746,4892468..4892597,4895481..4895540,4896450..4896505,4898934..4899010,4902933..4902984,4903995..4904062,4909380..4909446,4910234..4910389)
location: region:4876652-4910389:1
so has part: feature:4876652-4876735:1:exon
so has part: feature:4879403-4879451:1:exon
so has part: feature:4880900-4880965:1:exon
so has part: feature:4884327-4884443:1:exon
so has part: feature:4885766-4885807:1:exon
so has part: feature:4887336-4887442:1:exon
so has part: feature:4889028-4889084:1:exon
so has part: feature:4889678-4889746:1:exon
so has part: feature:4892468-4892597:1:exon
so has part: feature:4895481-4895540:1:exon
so has part: feature:4896450-4896505:1:exon
so has part: feature:4898934-4899010:1:exon
so has part: feature:4902933-4902984:1:exon
so has part: feature:4903995-4904062:1:exon
so has part: feature:4909380-4909446:1:exon
so has part: feature:4910234-4910389:1:exon

XP_048474304.1
type: Protein
SIO_000068: ncbiprotein

position:4876652:1
position: 4876652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4876652-4876735:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4879403-4879451:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4880900-4880965:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4884327-4884443:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4885766-4885807:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4887336-4887442:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4889028-4889084:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4889678-4889746:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4892468-4892597:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4895481-4895540:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4896450-4896505:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4898934-4899010:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4902933-4902984:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4903995-4904062:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4909380-4909446:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4910234-4910389:1:exon

sirt2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: sirt2
product: sirtuin 2 (silent mating type information regulation 2, homolog) 2 (S. cerevisiae), transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 57 long SRA reads, 25 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_048618348.1
SIO_010081: sirt2
subclass of: SO_0000673
so part of: sirt2
location: join(4877649..4877723,4879403..4879451,4880900..4880965,4884327..4884443,4885766..4885807,4887336..4887442,4889028..4889084,4889678..4889746,4892468..4892597,4895481..4895540,4896450..4896505,4898934..4899010,4902933..4902984,4903995..4904062,4909380..4909446,4910234..4911104)
location: region:4877649-4911104:1
so has part: feature:4877649-4877723:1:exon
so has part: feature:4879403-4879451:1:exon
so has part: feature:4880900-4880965:1:exon
so has part: feature:4884327-4884443:1:exon
so has part: feature:4885766-4885807:1:exon
so has part: feature:4887336-4887442:1:exon
so has part: feature:4889028-4889084:1:exon
so has part: feature:4889678-4889746:1:exon
so has part: feature:4892468-4892597:1:exon
so has part: feature:4895481-4895540:1:exon
so has part: feature:4896450-4896505:1:exon
so has part: feature:4898934-4899010:1:exon
so has part: feature:4902933-4902984:1:exon
so has part: feature:4903995-4904062:1:exon
so has part: feature:4909380-4909446:1:exon
so has part: feature:4910234-4911104:1:exon

position:4877649:1
position: 4877649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4877649-4877723:1:exon

position:4877723:1
position: 4877723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4879403-4879451:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4880900-4880965:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4884327-4884443:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4885766-4885807:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4887336-4887442:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4889028-4889084:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4889678-4889746:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4892468-4892597:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4895481-4895540:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4896450-4896505:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4898934-4899010:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4902933-4902984:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4903995-4904062:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4909380-4909446:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4910234-4911104:1:exon

sirt2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: sirt2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: NAD-dependent protein deacetylase sirtuin-2 isoform X2
translation: MEGEIAGETIGSAASEERETLQNRRQTLTLEVRYLNIFSVFQNSESQGEASESPDVSEMDFLRNLLSRSLNLREQQPKKVLEDLSIEGIAKYILNSKCEKIICMVGAGISTSAGIPDFRSPGTGLYHNLQKYHLPYPEAIFETDYFKQHPEPFFALAKELYPGQFKPTVCHYFMRMLRDKGLLLRCYTQNIDTLERVVGLQDEDLIEAHGTFHTSHCTNRACNKLYSLEWMKTQIFTKPLPKCEECDSVVKPDIIFFGDSLPQRFFPAMESDFPKCDLLIIMGTSLQVQPFASLANRVSDTTPRLLINKEITQQHDPMMALLGLGSSLDFDSSRAYRDVAYVGSCDDGCLALADLLGWKEELEDIVKKEHAMIDSKTEGAQDTGKAPAADMKKDDPEARGHEPAARQQDR
SIO_010081: sirt2
subclass of: SO_0000673
so part of: sirt2
location: join(4877664..4877723,4879403..4879451,4880900..4880965,4884327..4884443,4885766..4885807,4887336..4887442,4889028..4889084,4889678..4889746,4892468..4892597,4895481..4895540,4896450..4896505,4898934..4899010,4902933..4902984,4903995..4904062,4909380..4909446,4910234..4910389)
location: region:4877664-4910389:1
so has part: feature:4877664-4877723:1:exon
so has part: feature:4879403-4879451:1:exon
so has part: feature:4880900-4880965:1:exon
so has part: feature:4884327-4884443:1:exon
so has part: feature:4885766-4885807:1:exon
so has part: feature:4887336-4887442:1:exon
so has part: feature:4889028-4889084:1:exon
so has part: feature:4889678-4889746:1:exon
so has part: feature:4892468-4892597:1:exon
so has part: feature:4895481-4895540:1:exon
so has part: feature:4896450-4896505:1:exon
so has part: feature:4898934-4899010:1:exon
so has part: feature:4902933-4902984:1:exon
so has part: feature:4903995-4904062:1:exon
so has part: feature:4909380-4909446:1:exon
so has part: feature:4910234-4910389:1:exon

XP_048474305.1
type: Protein
SIO_000068: ncbiprotein

position:4877664:1
position: 4877664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4877664-4877723:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4879403-4879451:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4880900-4880965:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4884327-4884443:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4885766-4885807:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4887336-4887442:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4889028-4889084:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4889678-4889746:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4892468-4892597:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4895481-4895540:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4896450-4896505:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4898934-4899010:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4902933-4902984:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4903995-4904062:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4909380-4909446:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4910234-4910389:1:exon

sirt2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: sirt2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: NAD-dependent protein deacetylase sirtuin-2 isoform X5
translation: MDFLRNLLSRSLNLREQQPKKVLEDLSIEGIAKYILNSKCEKIICMVGAGISTSAGIPDFRSPGTGLYHNLQKYHLPYPEAIFETDYFKQHPEPFFALAKELYPGQFKPTVCHYFMRMLRDKGLLLRCYTQNIDTLERVVGLQDEDLIEAHGTFHTSHCTNRACNKLYSLEWMKTQIFTKPLPKCEECDSVVKPDIIFFGDSLPQRFFPAMESDFPKCDLLIIMGTSLQVQPFASLANRVSDTTPRLLINKEITQQHDPMMALLGLGSSLDFDSSRAYRDVAYVGSCDDGCLALADLLGWKEELEDIVKKEHAMIDSKTEGAQDTGKAPAADMKKDDPEARGHEPAARQQDR
SIO_010081: sirt2
subclass of: SO_0000673
so part of: sirt2
location: join(4880965,4884327..4884443,4885766..4885807,4887336..4887442,4889028..4889084,4889678..4889746,4892468..4892597,4895481..4895540,4896450..4896505,4898934..4899010,4902933..4902984,4903995..4904062,4909380..4909446,4910234..4910389)
location: region:4880965-4910389:1
so has part: feature:4880965-4880965:1:exon
so has part: feature:4884327-4884443:1:exon
so has part: feature:4885766-4885807:1:exon
so has part: feature:4887336-4887442:1:exon
so has part: feature:4889028-4889084:1:exon
so has part: feature:4889678-4889746:1:exon
so has part: feature:4892468-4892597:1:exon
so has part: feature:4895481-4895540:1:exon
so has part: feature:4896450-4896505:1:exon
so has part: feature:4898934-4899010:1:exon
so has part: feature:4902933-4902984:1:exon
so has part: feature:4903995-4904062:1:exon
so has part: feature:4909380-4909446:1:exon
so has part: feature:4910234-4910389:1:exon

XP_048474308.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4880965-4880965:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4884327-4884443:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4885766-4885807:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4887336-4887442:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4889028-4889084:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4889678-4889746:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4892468-4892597:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4895481-4895540:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4896450-4896505:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4898934-4899010:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4902933-4902984:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4903995-4904062:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4909380-4909446:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4910234-4910389:1:exon

sirt2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: sirt2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: NAD-dependent protein deacetylase sirtuin-2 isoform X5
translation: MDFLRNLLSRSLNLREQQPKKVLEDLSIEGIAKYILNSKCEKIICMVGAGISTSAGIPDFRSPGTGLYHNLQKYHLPYPEAIFETDYFKQHPEPFFALAKELYPGQFKPTVCHYFMRMLRDKGLLLRCYTQNIDTLERVVGLQDEDLIEAHGTFHTSHCTNRACNKLYSLEWMKTQIFTKPLPKCEECDSVVKPDIIFFGDSLPQRFFPAMESDFPKCDLLIIMGTSLQVQPFASLANRVSDTTPRLLINKEITQQHDPMMALLGLGSSLDFDSSRAYRDVAYVGSCDDGCLALADLLGWKEELEDIVKKEHAMIDSKTEGAQDTGKAPAADMKKDDPEARGHEPAARQQDR
SIO_010081: sirt2
subclass of: SO_0000673
so part of: sirt2
location: join(4880965,4884327..4884443,4885766..4885807,4887336..4887442,4889028..4889084,4889678..4889746,4892468..4892597,4895481..4895540,4896450..4896505,4898934..4899010,4902933..4902984,4903995..4904062,4909380..4909446,4910234..4910389)
location: region:4880965-4910389:1
so has part: feature:4880965-4880965:1:exon
so has part: feature:4884327-4884443:1:exon
so has part: feature:4885766-4885807:1:exon
so has part: feature:4887336-4887442:1:exon
so has part: feature:4889028-4889084:1:exon
so has part: feature:4889678-4889746:1:exon
so has part: feature:4892468-4892597:1:exon
so has part: feature:4895481-4895540:1:exon
so has part: feature:4896450-4896505:1:exon
so has part: feature:4898934-4899010:1:exon
so has part: feature:4902933-4902984:1:exon
so has part: feature:4903995-4904062:1:exon
so has part: feature:4909380-4909446:1:exon
so has part: feature:4910234-4910389:1:exon

XP_048474309.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4880965-4880965:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4884327-4884443:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4885766-4885807:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4887336-4887442:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4889028-4889084:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4889678-4889746:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4892468-4892597:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4895481-4895540:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4896450-4896505:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4898934-4899010:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4902933-4902984:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4903995-4904062:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4909380-4909446:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4910234-4910389:1:exon

sirt2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: sirt2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: NAD-dependent protein deacetylase sirtuin-2 isoform X5
translation: MDFLRNLLSRSLNLREQQPKKVLEDLSIEGIAKYILNSKCEKIICMVGAGISTSAGIPDFRSPGTGLYHNLQKYHLPYPEAIFETDYFKQHPEPFFALAKELYPGQFKPTVCHYFMRMLRDKGLLLRCYTQNIDTLERVVGLQDEDLIEAHGTFHTSHCTNRACNKLYSLEWMKTQIFTKPLPKCEECDSVVKPDIIFFGDSLPQRFFPAMESDFPKCDLLIIMGTSLQVQPFASLANRVSDTTPRLLINKEITQQHDPMMALLGLGSSLDFDSSRAYRDVAYVGSCDDGCLALADLLGWKEELEDIVKKEHAMIDSKTEGAQDTGKAPAADMKKDDPEARGHEPAARQQDR
SIO_010081: sirt2
subclass of: SO_0000673
so part of: sirt2
location: join(4880965,4884327..4884443,4885766..4885807,4887336..4887442,4889028..4889084,4889678..4889746,4892468..4892597,4895481..4895540,4896450..4896505,4898934..4899010,4902933..4902984,4903995..4904062,4909380..4909446,4910234..4910389)
location: region:4880965-4910389:1
so has part: feature:4880965-4880965:1:exon
so has part: feature:4884327-4884443:1:exon
so has part: feature:4885766-4885807:1:exon
so has part: feature:4887336-4887442:1:exon
so has part: feature:4889028-4889084:1:exon
so has part: feature:4889678-4889746:1:exon
so has part: feature:4892468-4892597:1:exon
so has part: feature:4895481-4895540:1:exon
so has part: feature:4896450-4896505:1:exon
so has part: feature:4898934-4899010:1:exon
so has part: feature:4902933-4902984:1:exon
so has part: feature:4903995-4904062:1:exon
so has part: feature:4909380-4909446:1:exon
so has part: feature:4910234-4910389:1:exon

XP_048474310.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4880965-4880965:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4884327-4884443:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4885766-4885807:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4887336-4887442:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4889028-4889084:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4889678-4889746:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4892468-4892597:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4895481-4895540:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4896450-4896505:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4898934-4899010:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4902933-4902984:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4903995-4904062:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4909380-4909446:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4910234-4910389:1:exon

sirt2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: sirt2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: NAD-dependent protein deacetylase sirtuin-2 isoform X5
translation: MDFLRNLLSRSLNLREQQPKKVLEDLSIEGIAKYILNSKCEKIICMVGAGISTSAGIPDFRSPGTGLYHNLQKYHLPYPEAIFETDYFKQHPEPFFALAKELYPGQFKPTVCHYFMRMLRDKGLLLRCYTQNIDTLERVVGLQDEDLIEAHGTFHTSHCTNRACNKLYSLEWMKTQIFTKPLPKCEECDSVVKPDIIFFGDSLPQRFFPAMESDFPKCDLLIIMGTSLQVQPFASLANRVSDTTPRLLINKEITQQHDPMMALLGLGSSLDFDSSRAYRDVAYVGSCDDGCLALADLLGWKEELEDIVKKEHAMIDSKTEGAQDTGKAPAADMKKDDPEARGHEPAARQQDR
SIO_010081: sirt2
subclass of: SO_0000673
so part of: sirt2
location: join(4880965,4884327..4884443,4885766..4885807,4887336..4887442,4889028..4889084,4889678..4889746,4892468..4892597,4895481..4895540,4896450..4896505,4898934..4899010,4902933..4902984,4903995..4904062,4909380..4909446,4910234..4910389)
location: region:4880965-4910389:1
so has part: feature:4880965-4880965:1:exon
so has part: feature:4884327-4884443:1:exon
so has part: feature:4885766-4885807:1:exon
so has part: feature:4887336-4887442:1:exon
so has part: feature:4889028-4889084:1:exon
so has part: feature:4889678-4889746:1:exon
so has part: feature:4892468-4892597:1:exon
so has part: feature:4895481-4895540:1:exon
so has part: feature:4896450-4896505:1:exon
so has part: feature:4898934-4899010:1:exon
so has part: feature:4902933-4902984:1:exon
so has part: feature:4903995-4904062:1:exon
so has part: feature:4909380-4909446:1:exon
so has part: feature:4910234-4910389:1:exon

XP_048474311.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4880965-4880965:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4884327-4884443:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4885766-4885807:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4887336-4887442:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4889028-4889084:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4889678-4889746:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4892468-4892597:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4895481-4895540:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4896450-4896505:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4898934-4899010:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4902933-4902984:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4903995-4904062:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4909380-4909446:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4910234-4910389:1:exon

sirt2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: sirt2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: NAD-dependent protein deacetylase sirtuin-2 isoform X5
translation: MDFLRNLLSRSLNLREQQPKKVLEDLSIEGIAKYILNSKCEKIICMVGAGISTSAGIPDFRSPGTGLYHNLQKYHLPYPEAIFETDYFKQHPEPFFALAKELYPGQFKPTVCHYFMRMLRDKGLLLRCYTQNIDTLERVVGLQDEDLIEAHGTFHTSHCTNRACNKLYSLEWMKTQIFTKPLPKCEECDSVVKPDIIFFGDSLPQRFFPAMESDFPKCDLLIIMGTSLQVQPFASLANRVSDTTPRLLINKEITQQHDPMMALLGLGSSLDFDSSRAYRDVAYVGSCDDGCLALADLLGWKEELEDIVKKEHAMIDSKTEGAQDTGKAPAADMKKDDPEARGHEPAARQQDR
SIO_010081: sirt2
subclass of: SO_0000673
so part of: sirt2
location: join(4880965,4884327..4884443,4885766..4885807,4887336..4887442,4889028..4889084,4889678..4889746,4892468..4892597,4895481..4895540,4896450..4896505,4898934..4899010,4902933..4902984,4903995..4904062,4909380..4909446,4910234..4910389)
location: region:4880965-4910389:1
so has part: feature:4880965-4880965:1:exon
so has part: feature:4884327-4884443:1:exon
so has part: feature:4885766-4885807:1:exon
so has part: feature:4887336-4887442:1:exon
so has part: feature:4889028-4889084:1:exon
so has part: feature:4889678-4889746:1:exon
so has part: feature:4892468-4892597:1:exon
so has part: feature:4895481-4895540:1:exon
so has part: feature:4896450-4896505:1:exon
so has part: feature:4898934-4899010:1:exon
so has part: feature:4902933-4902984:1:exon
so has part: feature:4903995-4904062:1:exon
so has part: feature:4909380-4909446:1:exon
so has part: feature:4910234-4910389:1:exon

XP_048474312.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4880965-4880965:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4884327-4884443:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4885766-4885807:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4887336-4887442:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4889028-4889084:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4889678-4889746:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4892468-4892597:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4895481-4895540:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4896450-4896505:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4898934-4899010:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4902933-4902984:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4903995-4904062:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4909380-4909446:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4910234-4910389:1:exon

sirt2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: sirt2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: NAD-dependent protein deacetylase sirtuin-2 isoform X5
translation: MDFLRNLLSRSLNLREQQPKKVLEDLSIEGIAKYILNSKCEKIICMVGAGISTSAGIPDFRSPGTGLYHNLQKYHLPYPEAIFETDYFKQHPEPFFALAKELYPGQFKPTVCHYFMRMLRDKGLLLRCYTQNIDTLERVVGLQDEDLIEAHGTFHTSHCTNRACNKLYSLEWMKTQIFTKPLPKCEECDSVVKPDIIFFGDSLPQRFFPAMESDFPKCDLLIIMGTSLQVQPFASLANRVSDTTPRLLINKEITQQHDPMMALLGLGSSLDFDSSRAYRDVAYVGSCDDGCLALADLLGWKEELEDIVKKEHAMIDSKTEGAQDTGKAPAADMKKDDPEARGHEPAARQQDR
SIO_010081: sirt2
subclass of: SO_0000673
so part of: sirt2
location: join(4880965,4884327..4884443,4885766..4885807,4887336..4887442,4889028..4889084,4889678..4889746,4892468..4892597,4895481..4895540,4896450..4896505,4898934..4899010,4902933..4902984,4903995..4904062,4909380..4909446,4910234..4910389)
location: region:4880965-4910389:1
so has part: feature:4880965-4880965:1:exon
so has part: feature:4884327-4884443:1:exon
so has part: feature:4885766-4885807:1:exon
so has part: feature:4887336-4887442:1:exon
so has part: feature:4889028-4889084:1:exon
so has part: feature:4889678-4889746:1:exon
so has part: feature:4892468-4892597:1:exon
so has part: feature:4895481-4895540:1:exon
so has part: feature:4896450-4896505:1:exon
so has part: feature:4898934-4899010:1:exon
so has part: feature:4902933-4902984:1:exon
so has part: feature:4903995-4904062:1:exon
so has part: feature:4909380-4909446:1:exon
so has part: feature:4910234-4910389:1:exon

XP_048474313.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4880965-4880965:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4884327-4884443:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4885766-4885807:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4887336-4887442:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4889028-4889084:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4889678-4889746:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4892468-4892597:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4895481-4895540:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4896450-4896505:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4898934-4899010:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4902933-4902984:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4903995-4904062:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4909380-4909446:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4910234-4910389:1:exon

sirt2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: sirt2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: NAD-dependent protein deacetylase sirtuin-2 isoform X5
translation: MDFLRNLLSRSLNLREQQPKKVLEDLSIEGIAKYILNSKCEKIICMVGAGISTSAGIPDFRSPGTGLYHNLQKYHLPYPEAIFETDYFKQHPEPFFALAKELYPGQFKPTVCHYFMRMLRDKGLLLRCYTQNIDTLERVVGLQDEDLIEAHGTFHTSHCTNRACNKLYSLEWMKTQIFTKPLPKCEECDSVVKPDIIFFGDSLPQRFFPAMESDFPKCDLLIIMGTSLQVQPFASLANRVSDTTPRLLINKEITQQHDPMMALLGLGSSLDFDSSRAYRDVAYVGSCDDGCLALADLLGWKEELEDIVKKEHAMIDSKTEGAQDTGKAPAADMKKDDPEARGHEPAARQQDR
SIO_010081: sirt2
subclass of: SO_0000673
so part of: sirt2
location: join(4880965,4884327..4884443,4885766..4885807,4887336..4887442,4889028..4889084,4889678..4889746,4892468..4892597,4895481..4895540,4896450..4896505,4898934..4899010,4902933..4902984,4903995..4904062,4909380..4909446,4910234..4910389)
location: region:4880965-4910389:1
so has part: feature:4880965-4880965:1:exon
so has part: feature:4884327-4884443:1:exon
so has part: feature:4885766-4885807:1:exon
so has part: feature:4887336-4887442:1:exon
so has part: feature:4889028-4889084:1:exon
so has part: feature:4889678-4889746:1:exon
so has part: feature:4892468-4892597:1:exon
so has part: feature:4895481-4895540:1:exon
so has part: feature:4896450-4896505:1:exon
so has part: feature:4898934-4899010:1:exon
so has part: feature:4902933-4902984:1:exon
so has part: feature:4903995-4904062:1:exon
so has part: feature:4909380-4909446:1:exon
so has part: feature:4910234-4910389:1:exon

XP_048474314.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4880965-4880965:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4884327-4884443:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4885766-4885807:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4887336-4887442:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4889028-4889084:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4889678-4889746:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4892468-4892597:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4895481-4895540:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4896450-4896505:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4898934-4899010:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4902933-4902984:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4903995-4904062:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4909380-4909446:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4910234-4910389:1:exon

sirt2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: sirt2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: NAD-dependent protein deacetylase sirtuin-2 isoform X5
translation: MDFLRNLLSRSLNLREQQPKKVLEDLSIEGIAKYILNSKCEKIICMVGAGISTSAGIPDFRSPGTGLYHNLQKYHLPYPEAIFETDYFKQHPEPFFALAKELYPGQFKPTVCHYFMRMLRDKGLLLRCYTQNIDTLERVVGLQDEDLIEAHGTFHTSHCTNRACNKLYSLEWMKTQIFTKPLPKCEECDSVVKPDIIFFGDSLPQRFFPAMESDFPKCDLLIIMGTSLQVQPFASLANRVSDTTPRLLINKEITQQHDPMMALLGLGSSLDFDSSRAYRDVAYVGSCDDGCLALADLLGWKEELEDIVKKEHAMIDSKTEGAQDTGKAPAADMKKDDPEARGHEPAARQQDR
SIO_010081: sirt2
subclass of: SO_0000673
so part of: sirt2
location: join(4880965,4884327..4884443,4885766..4885807,4887336..4887442,4889028..4889084,4889678..4889746,4892468..4892597,4895481..4895540,4896450..4896505,4898934..4899010,4902933..4902984,4903995..4904062,4909380..4909446,4910234..4910389)
location: region:4880965-4910389:1
so has part: feature:4880965-4880965:1:exon
so has part: feature:4884327-4884443:1:exon
so has part: feature:4885766-4885807:1:exon
so has part: feature:4887336-4887442:1:exon
so has part: feature:4889028-4889084:1:exon
so has part: feature:4889678-4889746:1:exon
so has part: feature:4892468-4892597:1:exon
so has part: feature:4895481-4895540:1:exon
so has part: feature:4896450-4896505:1:exon
so has part: feature:4898934-4899010:1:exon
so has part: feature:4902933-4902984:1:exon
so has part: feature:4903995-4904062:1:exon
so has part: feature:4909380-4909446:1:exon
so has part: feature:4910234-4910389:1:exon

XP_048474315.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4880965-4880965:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4884327-4884443:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4885766-4885807:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4887336-4887442:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4889028-4889084:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4889678-4889746:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4892468-4892597:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4895481-4895540:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4896450-4896505:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4898934-4899010:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4902933-4902984:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4903995-4904062:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4909380-4909446:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4910234-4910389:1:exon

rinl
type: Gene
subclass of: SO_0000704
RO_0002162: 259920
gene: rinl
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4971788..5005149
location: region:4971788-5005149:1
so has part: feature:4971788-5005149:1:exon
subclass of: SO_0000010

109923804
type: Gene
SIO_000068: ncbigene

position:4971788:1
position: 4971788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5005149:1
position: 5005149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4971788-5005149:1:exon

rinl
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 259920
gene: rinl
product: Ras and Rab interactor-like, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048618427.1
SIO_010081: rinl
subclass of: SO_0000673
so part of: rinl
location: join(4971788..4971863,4975748..4975839,4978957..4979349,4989601..4990305,4996076..4996381,4997196..4997327,4998312..4998475,5003675..5005149)
location: region:4971788-5005149:1
so has part: feature:4971788-4971863:1:exon
so has part: feature:4975748-4975839:1:exon
so has part: feature:4978957-4979349:1:exon
so has part: feature:4989601-4990305:1:exon
so has part: feature:4996076-4996381:1:exon
so has part: feature:4997196-4997327:1:exon
so has part: feature:4998312-4998475:1:exon
so has part: feature:5003675-5005149:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4971788-4971863:1:exon

position:4971863:1
position: 4971863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4975748-4975839:1:exon

position:4975748:1
position: 4975748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4975839:1
position: 4975839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4978957-4979349:1:exon

position:4978957:1
position: 4978957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4979349:1
position: 4979349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4989601-4990305:1:exon

position:4989601:1
position: 4989601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4990305:1
position: 4990305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4996076-4996381:1:exon

position:4996076:1
position: 4996076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4996381:1
position: 4996381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4997196-4997327:1:exon

position:4997196:1
position: 4997196
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4997327:1
position: 4997327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4998312-4998475:1:exon

position:4998312:1
position: 4998312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4998475:1
position: 4998475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5003675-5005149:1:exon

position:5003675:1
position: 5003675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

rinl
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 259920
gene: rinl
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ras and Rab interactor 3 isoform X1
translation: MIAYYCMSRDVLPFRLQLPTAILQATSKEQLEKISALGMMFWESPFNQNQDTTFPEAKGDVLAVSPTSSFELLKKQPIPMCSIQVMAENGALFFINPLFLKEHGDGWVTKIPLQTHAFKHSRLATRCKKPAGASREASPTSPRNQQEAALGNAVERSDSGKSLEEEEAFKGPGPDSASDNNMAALRRKNFTRHATWSWGDDADSEAPESKDTEQDRPRPRSTGSETRPRSNRTLPAHYRASWLEVNEQGMALPLTKSHSEASLFACDSPPLPSISELDSLSISSVEDESDVVSAHQKQQKHRSSGLSDKVRYRLSAMGHAFTGLVSADRRVRNKIEELGQDKGSYFGGLVQGFVSYTRQNRDKYASSTEMLQAIYHMIASLRNYLSQSSELTPILDQAEHEECDIDASIEKALQKCILKPLRDHIYSCLLDFHTKDGSLKKLRDKQLVLQNQSLAELGVSARVPDAASLEKIQQRFNTMHTLYSPWKKVMQLLKACKLIYEAMSGSSGKPYGADDFLPVLTYVLTSSNLTNLSLDVEYMMELLDQTQLHGEGGYYLTTMFGALYHISNFQPRQLIRQMSDDAKSSIRQWRTRRTIHHNQSRRRSAQDLLHISLHEPCGNQVPVLAPVHMSVTEVERACAEKFDVPDPENYRLFVVRGESYQLLEGDTCPQKVKEELKQKGETSFHFVYGLEHRSKLAQTSSEEEQPIS
SIO_010081: rinl
subclass of: SO_0000673
so part of: rinl
location: join(4971838..4971863,4975748..4975839,4978957..4979349,4989601..4990305,4996076..4996381,4997196..4997327,4998312..4998475,5003675..5003983)
location: region:4971838-5003983:1
so has part: feature:4971838-4971863:1:exon
so has part: feature:4975748-4975839:1:exon
so has part: feature:4978957-4979349:1:exon
so has part: feature:4989601-4990305:1:exon
so has part: feature:4996076-4996381:1:exon
so has part: feature:4997196-4997327:1:exon
so has part: feature:4998312-4998475:1:exon
so has part: feature:5003675-5003983:1:exon

XP_048474384.1
type: Protein
SIO_000068: ncbiprotein

position:4971838:1
position: 4971838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5003983:1
position: 5003983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4971838-4971863:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4975748-4975839:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4978957-4979349:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4989601-4990305:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4996076-4996381:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4997196-4997327:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4998312-4998475:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5003675-5003983:1:exon