Rhincodon typus isolate 14 chromosome 32, sRhiTyp1.1, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes; Rhincodontidae; Rhincodon.
REFSEQ INFORMATION: The reference sequence is identical to\nCM038829.1.\nAssembly name: sRhiTyp1.1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Squalomix on 2022/02/03. The\noriginal whole-genome shotgun project has the accession\nJAHMAH000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Squalomix\nAssembly Date :: 22-FEB-2021\nAssembly Method :: Supernova v. 2.1.1; P_RNA_scaffolder v.\n commit 7941e0f; Tigmint v. 1.1.2; ARKS v.\n 1.1.0; 3D-DNA v. 180922\nAssembly Name :: sRhiTyp1.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 46.7x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Rhincodon typus Annotation Release\n 101\nAnnotation Version :: 101\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 43 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
C-X-C chemokine receptor type 5, transcript variant X2
COORDINATES: polyA evidence [ECO:0006239]
C-X-C chemokine receptor type 5, transcript variant X1
C-X-C chemokine receptor type 5 isoform X2
C-X-C chemokine receptor type 5 isoform X1
DEAD (Asp-Glu-Ala-Asp) box helicase 6, transcript variant X6
DEAD (Asp-Glu-Ala-Asp) box helicase 6, transcript variant X1
DEAD (Asp-Glu-Ala-Asp) box helicase 6, transcript variant X2
DEAD (Asp-Glu-Ala-Asp) box helicase 6, transcript variant X3
DEAD (Asp-Glu-Ala-Asp) box helicase 6, transcript variant X4
DEAD (Asp-Glu-Ala-Asp) box helicase 6, transcript variant X5
probable ATP-dependent RNA helicase ddx6 isoform X1
probable ATP-dependent RNA helicase ddx6 isoform X2
trehalase (brush-border membrane glycoprotein), transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 61 long SRA reads, 6 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
trehalase (brush-border membrane glycoprotein), transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 58 long SRA reads, 6 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
trehalase (brush-border membrane glycoprotein), transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 58 long SRA reads, 6 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
trehalase (brush-border membrane glycoprotein), transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 58 long SRA reads, 6 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
hypoxia up-regulated 1, transcript variant X2
hypoxia up-regulated 1, transcript variant X1
hypoxia up-regulated 1, transcript variant X3
VPS11 core subunit of CORVET and HOPS complexes
vacuolar protein sorting-associated protein 11 homolog
intraflagellar transport 46 homolog (Chlamydomonas), transcript variant X2
intraflagellar transport 46 homolog (Chlamydomonas), transcript variant X3
intraflagellar transport protein 46 homolog isoform X2
intraflagellar transport protein 46 homolog isoform X3
intraflagellar transport 46 homolog (Chlamydomonas), transcript variant X1
intraflagellar transport protein 46 homolog isoform X1
coiled-coil domain containing 153, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
coiled-coil domain containing 153, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
coiled-coil domain-containing protein 153 isoform X1
coiled-coil domain-containing protein 153 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 74% coverage of the annotated genomic feature by RNAseq alignments
Cbl proto-oncogene, E3 ubiquitin protein ligase, transcript variant X1
Cbl proto-oncogene, E3 ubiquitin protein ligase, transcript variant X2
E3 ubiquitin-protein ligase CBL isoform X1
E3 ubiquitin-protein ligase CBL isoform X2
cell surface glycoprotein MUC18, transcript variant X3
cell surface glycoprotein MUC18, transcript variant X1
cell surface glycoprotein MUC18, transcript variant X2
cell surface glycoprotein MUC18, transcript variant X4
cell surface glycoprotein MUC18 isoform X3
cell surface glycoprotein MUC18 isoform X1
cell surface glycoprotein MUC18 isoform X4
cell surface glycoprotein MUC18 isoform X2
complement C1q tumor necrosis factor-related protein 5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 72% coverage of the annotated genomic feature by RNAseq alignments
ubiquitin carboxyl-terminal hydrolase 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
thy-1 membrane glycoprotein, transcript variant X1
thy-1 membrane glycoprotein, transcript variant X3
thy-1 membrane glycoprotein, transcript variant X2
uncharacterized LOC125486709, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
uncharacterized LOC125486709, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
uncharacterized LOC125486709, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 long SRA reads, and 80% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
HOATZ cilia and flagella associated protein
cilia- and flagella-associated protein HOATZ
B-cell translocation gene 4, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
B-cell translocation gene 4, transcript variant X3
B-cell translocation gene 4, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
B-cell translocation gene 4, transcript variant X5
B-cell translocation gene 4, transcript variant X2
uncharacterized LOC109920457, transcript variant X7
uncharacterized LOC109920457, transcript variant X3
uncharacterized LOC109920457, transcript variant X12
uncharacterized LOC109920457, transcript variant X13
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, and 91% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
uncharacterized LOC109920457, transcript variant X6
uncharacterized LOC109920457, transcript variant X1
uncharacterized LOC109920457, transcript variant X9
uncharacterized LOC109920457, transcript variant X11
uncharacterized LOC109920457, transcript variant X8
uncharacterized LOC109920457, transcript variant X10
uncharacterized LOC109920457, transcript variant X4
uncharacterized LOC109920457, transcript variant X2
uncharacterized LOC109920457, transcript variant X5
uncharacterized protein LOC109920457 isoform X5
uncharacterized protein LOC109920457 isoform X2
uncharacterized protein LOC109920457 isoform X1
uncharacterized protein LOC109920457 isoform X3
uncharacterized protein LOC109920457 isoform X4
stabilizer of axonemal microtubules 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
T-cell surface glycoprotein CD3 delta chain-like, transcript variant X2
T-cell surface glycoprotein CD3 delta chain-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
T-cell surface glycoprotein CD3 delta chain-like isoform X2
T-cell surface glycoprotein CD3 delta chain-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
POU domain, class 2, transcription factor 3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins, and 78% coverage of the annotated genomic feature by RNAseq alignments
rho guanine nucleotide exchange factor 12
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 14 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments
glutamate receptor ionotropic, kainate 4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
TEN1 subunit of CST complex, transcript variant X2
TEN1 subunit of CST complex, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
sortilin-related receptor, L(DLR class) A repeats containing, transcript variant X2
sortilin-related receptor, L(DLR class) A repeats containing, transcript variant X1
sortilin-related receptor, L(DLR class) A repeats containing, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins, and 88% coverage of the annotated genomic feature by RNAseq alignments
ubiquitin-associated and SH3 domain-containing protein B
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
succinate dehydrogenase complex, subunit D, integral membrane protein b
succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 50% coverage of the annotated genomic feature by RNAseq alignments
pleckstrin homology-like domain family B member 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 92% coverage of the annotated genomic feature by RNAseq alignments
pleckstrin homology-like domain, family B, member 1b, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
pleckstrin homology-like domain, family B, member 1b, transcript variant X2
pleckstrin homology-like domain, family B, member 1b, transcript variant X3
pleckstrin homology-like domain, family B, member 1b, transcript variant X4
pleckstrin homology-like domain, family B, member 1b, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
pleckstrin homology-like domain family B member 1 isoform X1
pleckstrin homology-like domain family B member 1 isoform X2
pleckstrin homology-like domain family B member 1 isoform X3
pleckstrin homology-like domain family B member 1 isoform X4
pleckstrin homology-like domain family B member 1 isoform X5
NLR family member X1, transcript variant X2
NLR family member X1, transcript variant X1
Na(+)/H(+) exchange regulatory cofactor NHE-RF3-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: Na(+)/H(+) exchange regulatory cofactor NHE-RF3-like
ubiquitination factor E4A (UFD2 homolog, yeast), transcript variant X1
ubiquitination factor E4A (UFD2 homolog, yeast), transcript variant X2
ubiquitin conjugation factor E4 A isoform X1
ubiquitin conjugation factor E4 A isoform X2
ATP synthase subunit g, mitochondrial-like
lysine (K)-specific methyltransferase 2A
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 13 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transmembrane protein 25, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transmembrane protein 25, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
histone-lysine N-methyltransferase 2A-like
FXYD domain containing ion transport regulator 6, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
FXYD domain containing ion transport regulator 6, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
FXYD domain containing ion transport regulator 6, transcript variant X2
FXYD domain-containing ion transport regulator 6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments
marginal zone B- and B1-cell-specific protein, transcript variant X1
marginal zone B- and B1-cell-specific protein, transcript variant X2
marginal zone B- and B1-cell-specific protein, transcript variant X3
marginal zone B- and B1-cell-specific protein
interleukin-20 receptor subunit alpha-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 long SRA reads, and 83% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
interleukin-20 receptor subunit alpha-like isoform X1
interleukin-20 receptor subunit alpha-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
uncharacterized protein LOC109937485 isoform X2
small integral membrane protein 35-like, transcript variant X1
small integral membrane protein 35-like, transcript variant X2
small integral membrane protein 35-like isoform X2
uncharacterized protein LOC125486746 isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments
sodium channel, voltage-gated, type II, beta, transcript variant X1
sodium channel subunit beta-2 isoform X1
sodium channel, voltage-gated, type II, beta, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
sodium channel subunit beta-2 isoform X2
myelin protein P0-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
myelin protein P0-like, transcript variant X4
myelin protein P0-like, transcript variant X2
myelin protein P0-like, transcript variant X1
myelin protein zero-like protein 3 isoform X1
myelin protein zero-like protein 3 isoform X3
sterol-C5-desaturase, transcript variant X2
sterol-C5-desaturase, transcript variant X1
sterol-C5-desaturase, transcript variant X3
glucuronokinase with putative uridyl pyrophosphorylase, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
glucuronokinase with putative uridyl pyrophosphorylase isoform X1
glucuronokinase with putative uridyl pyrophosphorylase, transcript variant X2
glucuronokinase with putative uridyl pyrophosphorylase isoform X2
carotenoid-cleaving dioxygenase, mitochondrial
T-cell immunoglobulin and mucin domain-containing protein 4-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 95% coverage of the annotated genomic feature by RNAseq alignments
T-cell immunoglobulin and mucin domain-containing protein 4-like, transcript variant X2
uncharacterized protein LOC109938865 isoform X2
T-cell immunoglobulin and mucin domain-containing protein 4-like isoform X1
zinc finger and BTB domain containing 16a, transcript variant X2
zinc finger and BTB domain containing 16a, transcript variant X3
zinc finger and BTB domain containing 16a, transcript variant X1
zinc finger and BTB domain-containing protein 16-A isoform X1
zinc finger and BTB domain-containing protein 16-A isoform X2
5-hydroxytryptamine (serotonin) receptor 3A
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 32 Proteins, and 17% coverage of the annotated genomic feature by RNAseq alignments
5-hydroxytryptamine (serotonin) receptor 3B
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 45 Proteins, and 20% coverage of the annotated genomic feature by RNAseq alignments
ubiquitin specific peptidase 28, transcript variant X1
ubiquitin specific peptidase 28, transcript variant X2
ubiquitin specific peptidase 28, transcript variant X6
ubiquitin specific peptidase 28, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
ubiquitin specific peptidase 28, transcript variant X3
ubiquitin carboxyl-terminal hydrolase 28 isoform X1
ubiquitin carboxyl-terminal hydrolase 28 isoform X2
ubiquitin carboxyl-terminal hydrolase 28 isoform X3
ubiquitin carboxyl-terminal hydrolase 28 isoform X6
ubiquitin carboxyl-terminal hydrolase 28 isoform X5
ubiquitin specific peptidase 28, transcript variant X4
ubiquitin carboxyl-terminal hydrolase 28 isoform X4
tetratricopeptide repeat domain 12, transcript variant X1
tetratricopeptide repeat domain 12, transcript variant X2
tetratricopeptide repeat protein 12 isoform X1
tetratricopeptide repeat domain 12, transcript variant X3
tetratricopeptide repeat protein 12 isoform X2
ankyrin repeat and kinase domain containing 1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; deleted 3 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 50% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; deleted 3 bases in 3 codons; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: ankyrin repeat and protein kinase domain-containing protein 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 Proteins, and 89% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: D(2) dopamine receptor A
centromere/kinetochore protein zw10 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 long SRA reads, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
ATP-binding cassette subfamily G member 4-like, transcript variant X1
ATP-binding cassette subfamily G member 4-like
ATP-binding cassette subfamily G member 4-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
G protein-activated inward rectifier potassium channel 3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 81 Proteins
ATP-binding cassette, sub-family G (WHITE), member 4a
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 27 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments
ATP-binding cassette sub-family G member 4
ring finger protein 214, transcript variant X1
ring finger protein 214, transcript variant X4
ring finger protein 214, transcript variant X5
ring finger protein 214, transcript variant X6
ring finger protein 214, transcript variant X2
uncharacterized protein rnf214 isoform X6
ring finger protein 214, transcript variant X3
ring finger protein 214, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 94% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF01210
centrosomal protein of 164 kDa, transcript variant X1
centrosomal protein of 164 kDa, transcript variant X4
centrosomal protein of 164 kDa, transcript variant X2
centrosomal protein of 164 kDa, transcript variant X3
centrosomal protein of 164 kDa isoform X1
centrosomal protein of 164 kDa isoform X2
Down syndrome cell adhesion molecule-like protein 1 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 78% coverage of the annotated genomic feature by RNAseq alignments
histone H4 transcription factor, transcript variant X5
histone H4 transcription factor, transcript variant X4
histone H4 transcription factor, transcript variant X3
histone H4 transcription factor, transcript variant X2
histone H4 transcription factor, transcript variant X1
histone H4 transcription factor, transcript variant X6
histone H4 transcription factor isoform X1
histone H4 transcription factor isoform X2
histone H4 transcription factor isoform X3
dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase), transcript variant X1
dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase), transcript variant X2
UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 78% coverage of the annotated genomic feature by RNAseq alignments
COORDINATES: nucleotide motif:Rfam:12.0:RF00026
uncharacterized protein LOC553749 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC109914112, transcript variant X1
uncharacterized LOC109914112, transcript variant X2
uncharacterized protein C11orf53 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 65% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 42 Proteins, and 71% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: serine/threonine-protein kinase SIK3 homolog
platelet-activating factor acetylhydrolase 1b, catalytic subunit 2
platelet-activating factor acetylhydrolase IB subunit beta
SID1 transmembrane family, member 2, transcript variant X1
SID1 transmembrane family, member 2, transcript variant X2
SID1 transmembrane family member 2 isoform X1
SID1 transmembrane family member 2 isoform X2
palmitoyl-protein thioesterase ABHD10, mitochondrial-like, transcript variant X2
palmitoyl-protein thioesterase ABHD10, mitochondrial-like, transcript variant X1
palmitoyl-protein thioesterase ABHD10, mitochondrial-like isoform X2
palmitoyl-protein thioesterase ABHD10, mitochondrial-like isoform X1
proprotein convertase subtilisin/kexin type 7-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 93% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
centrosomal AT-AC splicing factor, transcript variant X1
centrosomal AT-AC splicing factor, transcript variant X2
coiled-coil domain-containing protein 84 isoform X1
coiled-coil domain-containing protein 84 isoform X2
trafficking protein particle complex subunit 4
salt-inducible kinase 2a, transcript variant X1
serine/threonine-protein kinase SIK2a isoform X1
salt-inducible kinase 2a, transcript variant X2
serine/threonine-protein kinase SIK2a isoform X2
serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform
ALG9 alpha-1,2-mannosyltransferase, transcript variant X2
ALG9 alpha-1,2-mannosyltransferase, transcript variant X1
alpha-1,2-mannosyltransferase ALG9 isoform X2
alpha-1,2-mannosyltransferase ALG9 isoform X1
ferredoxin-fold anticodon binding domain containing 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
ferredoxin-fold anticodon binding domain containing 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
ferredoxin-fold anticodon binding domain containing 1, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
ferredoxin-fold anticodon-binding domain-containing protein 1 isoform X1
ferredoxin-fold anticodon-binding domain-containing protein 1 isoform X2
chromosome 32 C11orf1 homolog, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 91% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
UPF0686 protein C11orf1 homolog isoform X3
chromosome 32 C11orf1 homolog, transcript variant X2
UPF0686 protein C11orf1 homolog isoform X2
chromosome 32 C11orf1 homolog, transcript variant X1
UPF0686 protein C11orf1 homolog isoform X1
crystallin, alpha B, b, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
crystallin, alpha B, b, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 35 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
heat shock protein, alpha-crystallin-related, b2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
heat shock protein, alpha-crystallin-related, b2, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
heat shock protein, alpha-crystallin-related, b2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
heat shock protein, alpha-crystallin-related, b2, transcript variant X3
uncharacterized protein C11orf52 homolog, transcript variant X1
uncharacterized protein C11orf52 homolog, transcript variant X2
uncharacterized protein C11orf52 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 94% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial
PIH1 domain containing 2, transcript variant X3
PIH1 domain containing 2, transcript variant X2
PIH1 domain containing 2, transcript variant X5
PIH1 domain containing 2, transcript variant X4
PIH1 domain containing 2, transcript variant X1
PIH1 domain containing 2, transcript variant X6
PIH1 domain containing 2, transcript variant X7
PIH1 domain containing 2, transcript variant X8
PIH1 domain-containing protein 2 isoform X3
PIH1 domain-containing protein 2 isoform X2
PIH1 domain-containing protein 2 isoform X1
PIH1 domain-containing protein 2 isoform X4
NKAP domain containing 1, transcript variant X9
NKAP domain containing 1, transcript variant X8
NKAP domain containing 1, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
NKAP domain containing 1, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
NKAP domain containing 1, transcript variant X2
NKAP domain containing 1, transcript variant X4
NKAP domain containing 1, transcript variant X5
NKAP domain containing 1, transcript variant X1
NKAP domain containing 1, transcript variant X10
NKAP domain containing 1, transcript variant X7
NKAP domain containing 1, transcript variant X11
cell adhesion molecule 1a, transcript variant X1
cell adhesion molecule 1a, transcript variant X2
cell adhesion molecule 1a, transcript variant X3
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA isoleucine (anticodon AAU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
cytotoxic and regulatory T cell molecule
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 long SRA reads, and 91% coverage of the annotated genomic feature by RNAseq alignments
cytotoxic and regulatory T-cell molecule
LOW QUALITY PROTEIN: heat shock cognate 71 kDa protein-like
sorting nexin 19b, transcript variant X1
sorting nexin 19b, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
A disintegrin and metalloproteinase with thrombospondin motifs 15
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 34 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
A disintegrin and metalloproteinase with thrombospondin motifs 8, transcript variant X1
A disintegrin and metalloproteinase with thrombospondin motifs 8, transcript variant X2
A disintegrin and metalloproteinase with thrombospondin motifs 8 isoform X1
A disintegrin and metalloproteinase with thrombospondin motifs 8 isoform X2
zinc finger and BTB domain containing 44
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
zinc finger and BTB domain-containing protein 44
neural cell adhesion molecule 1a, transcript variant X6
neural cell adhesion molecule 1a, transcript variant X5
neural cell adhesion molecule 1a, transcript variant X3
neural cell adhesion molecule 1a, transcript variant X4
neural cell adhesion molecule 1a, transcript variant X2
neural cell adhesion molecule 1a, transcript variant X1
neural cell adhesion molecule 1a isoform X6
neural cell adhesion molecule 1a isoform X5
neural cell adhesion molecule 1a isoform X3
neural cell adhesion molecule 1a isoform X4
neural cell adhesion molecule 1a isoform X2
neural cell adhesion molecule 1a isoform X1
neural cell adhesion molecule 1a, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
neural cell adhesion molecule 1a isoform X7
placenta-expressed transcript 1 protein-like, transcript variant X2
placenta-expressed transcript 1 protein-like, transcript variant X1
placenta-expressed transcript 1 protein-like
anaphase promoting complex subunit 13, transcript variant X6
anaphase promoting complex subunit 13, transcript variant X2
anaphase promoting complex subunit 13, transcript variant X3
anaphase promoting complex subunit 13, transcript variant X4
anaphase promoting complex subunit 13, transcript variant X5
anaphase promoting complex subunit 13, transcript variant X1
anaphase-promoting complex subunit 13 isoform X1
anaphase-promoting complex subunit 13 isoform X2
thymocyte nuclear protein 1, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 long SRA reads, 10 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
thymocyte nuclear protein 1, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 long SRA reads, 11 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
thymocyte nuclear protein 1, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 long SRA reads, 10 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
thymocyte nuclear protein 1, transcript variant X11
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 long SRA reads, 10 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
thymocyte nuclear protein 1, transcript variant X12
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 long SRA reads, 10 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
thymocyte nuclear protein 1, transcript variant X13
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 long SRA reads, 10 Proteins, and 90% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
thymocyte nuclear protein 1, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 long SRA reads, 11 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
thymocyte nuclear protein 1, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 long SRA reads, 11 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
thymocyte nuclear protein 1, transcript variant X9
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 long SRA reads, 11 Proteins, and 90% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
thymocyte nuclear protein 1, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 long SRA reads, 11 Proteins, and 89% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
thymocyte nuclear protein 1, transcript variant X10
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 long SRA reads, 10 Proteins, and 89% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
thymocyte nuclear protein 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 long SRA reads, 11 Proteins, and 90% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
thymocyte nuclear protein 1, transcript variant X14
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
thymocyte nuclear protein 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 long SRA reads, 10 Proteins, and 90% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
vacuolar protein sorting-associated protein 26B-like, transcript variant X2
vacuolar protein sorting-associated protein 26B-like, transcript variant X1
vacuolar protein sorting-associated protein 26B-like isoform X2
vacuolar protein sorting-associated protein 26B-like isoform X1
non-SMC condensin II complex, subunit D3, transcript variant X1
non-SMC condensin II complex, subunit D3, transcript variant X3
non-SMC condensin II complex, subunit D3, transcript variant X2
condensin-2 complex subunit D3 isoform X1
condensin-2 complex subunit D3 isoform X3
condensin-2 complex subunit D3 isoform X2
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 2 bases at 2 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: junctional adhesion molecule C
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
RNA-binding protein 7, transcript variant X4
RNA-binding protein 7, transcript variant X3
RNA-binding protein 7, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 11 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
RNA-binding protein 7, transcript variant X1
mth938 domain-containing protein-like, transcript variant X5
mth938 domain-containing protein-like, transcript variant X4
mth938 domain-containing protein-like, transcript variant X2
mth938 domain-containing protein-like, transcript variant X3
mth938 domain-containing protein-like, transcript variant X1
mth938 domain-containing protein-like isoform X1
mth938 domain-containing protein-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 Proteins, and 18% coverage of the annotated genomic feature by RNAseq alignments
potassium-transporting ATPase alpha chain 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 224 Proteins, and 90% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized protein CXorf65 homolog, transcript variant X5
uncharacterized protein CXorf65 homolog, transcript variant X1
uncharacterized protein CXorf65 homolog, transcript variant X3
uncharacterized protein CXorf65 homolog, transcript variant X2
uncharacterized protein CXorf65 homolog, transcript variant X4
uncharacterized protein LOC125486714 isoform X5
uncharacterized protein CXorf65 homolog isoform X4
uncharacterized protein CXorf65 homolog isoform X3
uncharacterized protein LOC125486714 isoform X2
uncharacterized protein LOC125486714 isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
neurogenic locus notch homolog protein 3-like
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 51 Proteins
junctional cadherin complex regulator, transcript variant X2
junctional cadherin complex regulator, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 46 Proteins, and 36% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, and 85% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 71 long SRA reads, 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments
opioid-binding protein/cell adhesion molecule homolog, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
opioid-binding protein/cell adhesion molecule homolog, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
opioid-binding protein/cell adhesion molecule homolog, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
opioid-binding protein/cell adhesion molecule homolog isoform X3
opioid-binding protein/cell adhesion molecule homolog isoform X2
opioid-binding protein/cell adhesion molecule homolog isoform X1
COORDINATES: nucleotide motif:Rfam:12.0:RF00003
COORDINATES: nucleotide motif:Rfam:12.0:RF00012
V-set and immunoglobulin domain-containing protein 2, transcript variant X2
V-set and immunoglobulin domain-containing protein 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
V-set and immunoglobulin domain-containing protein 2 isoform X2
V-set and immunoglobulin domain-containing protein 2 isoform X1
endothelial cell-selective adhesion molecule
myb/SANT-like DNA-binding domain-containing protein 2
uncharacterized LOC125486721, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
uncharacterized LOC125486721, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
roundabout, axon guidance receptor, homolog 3 (Drosophila)
COORDINATES: nucleotide motif:Rfam:12.0:RF00015
roundabout, axon guidance receptor, homolog 4 (Drosophila), transcript variant X3
roundabout, axon guidance receptor, homolog 4 (Drosophila), transcript variant X1
roundabout, axon guidance receptor, homolog 4 (Drosophila), transcript variant X2
pbx/knotted 1 homeobox 2, transcript variant X8
pbx/knotted 1 homeobox 2, transcript variant X7
pbx/knotted 1 homeobox 2, transcript variant X10
pbx/knotted 1 homeobox 2, transcript variant X2
pbx/knotted 1 homeobox 2, transcript variant X6
pbx/knotted 1 homeobox 2, transcript variant X1
pbx/knotted 1 homeobox 2, transcript variant X5
pbx/knotted 1 homeobox 2, transcript variant X3
pbx/knotted 1 homeobox 2, transcript variant X4
pbx/knotted 1 homeobox 2, transcript variant X9
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
transmembrane protein 218, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transmembrane protein 218, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transmembrane protein 218, transcript variant X1
transmembrane protein 218, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A
solute carrier family 37 member 2, transcript variant X1
solute carrier family 37 member 2, transcript variant X2
glucose-6-phosphate exchanger SLC37A2 isoform X1
glucose-6-phosphate exchanger SLC37A2 isoform X2
coiled-coil domain-containing protein 15
COORDINATES: nucleotide motif:Rfam:12.0:RF00563
hepatic and glial cell adhesion molecule b, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 6 Proteins, and 89% coverage of the annotated genomic feature by RNAseq alignments
hepatic and glial cell adhesion molecule b
arginyl-tRNA--protein transferase 1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 long SRA reads, and 83% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
arginyl-tRNA--protein transferase 1-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 long SRA reads, 1 Protein, and 83% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
arginyl-tRNA--protein transferase 1-like isoform X2
arginyl-tRNA--protein transferase 1-like isoform X1
fasciculation and elongation protein zeta 1 (zygin I)
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
fasciculation and elongation protein zeta-1
hepatic and glial cell adhesion molecule b, transcript variant X3
hepatic and glial cell adhesion molecule b, transcript variant X2
hepatic and glial cell adhesion molecule b, transcript variant X4
hepatic and glial cell adhesion molecule b, transcript variant X5
hepatic and glial cell adhesion molecule b, transcript variant X6
EI24 autophagy associated transmembrane protein
STT3 oligosaccharyltransferase complex catalytic subunit A, transcript variant X2
STT3 oligosaccharyltransferase complex catalytic subunit A, transcript variant X1
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A
checkpoint kinase 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 18 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
checkpoint kinase 1, transcript variant X3
checkpoint kinase 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
serine/threonine-protein kinase Chk1 isoform X1
serine/threonine-protein kinase Chk1 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 82% coverage of the annotated genomic feature by RNAseq alignments
cell adhesion associated, oncogene regulated, transcript variant X2
cell adhesion associated, oncogene regulated, transcript variant X3
cell adhesion associated, oncogene regulated, transcript variant X1
cell adhesion molecule-related/down-regulated by oncogenes isoform X2
cell adhesion molecule-related/down-regulated by oncogenes isoform X1
V-set and immunoglobulin domain-containing protein 10-like 2
signal recognition particle receptor subunit alpha-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 42 long SRA reads, 15 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 38 long SRA reads, 15 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 39 long SRA reads, 15 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 38 long SRA reads, 15 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 38 long SRA reads, 15 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 38 long SRA reads, 15 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 38 long SRA reads, 15 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 long SRA reads, 14 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
ilvB (bacterial acetolactate synthase)-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 10 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 134 long SRA reads, 6 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments
signal recognition particle receptor subunit alpha
FAD-dependent oxidoreductase domain containing 1
FAD-dependent oxidoreductase domain-containing protein 1
toll-interleukin 1 receptor (TIR) domain containing adaptor protein, transcript variant X1
toll-interleukin 1 receptor (TIR) domain containing adaptor protein, transcript variant X4
toll-interleukin 1 receptor (TIR) domain containing adaptor protein, transcript variant X2
toll-interleukin 1 receptor (TIR) domain containing adaptor protein, transcript variant X3
toll/interleukin-1 receptor domain-containing adapter protein
COORDINATES: nucleotide motif:Rfam:12.0:RF00004
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
CMP-N-acetylneuraminate-beta-galactosamide- alpha-2,3-sialyltransferase 4-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments
kirre like nephrin family adhesion molecule 3a
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins, and 12% coverage of the annotated genomic feature by RNAseq alignments
Fli-1 proto-oncogene, ETS transcription factor, transcript variant X4
Fli-1 proto-oncogene, ETS transcription factor, transcript variant X1
Fli-1 proto-oncogene, ETS transcription factor, transcript variant X2
Fli-1 proto-oncogene, ETS transcription factor, transcript variant X5
Fli-1 proto-oncogene, ETS transcription factor, transcript variant X3
Fli-1 proto-oncogene, ETS transcription factor, transcript variant X6
Fli-1 proto-oncogene, ETS transcription factor, transcript variant X7
Friend leukemia integration 1 transcription factor isoform X3
Friend leukemia integration 1 transcription factor isoform X1
Friend leukemia integration 1 transcription factor isoform X2
Friend leukemia integration 1 transcription factor isoform X4
Fli-1 proto-oncogene, ETS transcription factor, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Friend leukemia integration 1 transcription factor isoform X5
v-ets avian erythroblastosis virus E26 oncogene homolog 1
potassium inwardly rectifying channel subfamily J member 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 48 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
ATP-sensitive inward rectifier potassium channel 1
potassium inwardly rectifying channel subfamily J member 5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 134 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
G protein-activated inward rectifier potassium channel 4
rho GTPase-activating protein 32-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
rho GTPase-activating protein 32-like, transcript variant X3
rho GTPase-activating protein 32-like, transcript variant X4
rho GTPase-activating protein 32-like, transcript variant X5
rho GTPase-activating protein 32-like, transcript variant X1
rho GTPase-activating protein 32-like, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
rho GTPase-activating protein 32-like, transcript variant X8
rho GTPase-activating protein 32-like, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
rho GTPase-activating protein 32-like isoform X2
rho GTPase-activating protein 32-like isoform X1
rho GTPase-activating protein 32-like isoform X3
rho GTPase-activating protein 32-like isoform X5
rho GTPase-activating protein 32-like isoform X4
rho GTPase-activating protein 32-like isoform X6
homeobox protein BarH-like 2, transcript variant X2
homeobox protein BarH-like 2, transcript variant X1
transmembrane protein 45B, transcript variant X2
transmembrane protein 45B, transcript variant X1
nuclear factor related to kappaB binding protein
nuclear factor related to kappa-B-binding protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 long SRA reads, 1 Protein, and 82% coverage of the annotated genomic feature by RNAseq alignments
amyloid beta (A4) precursor-like protein 2
suppressor of tumorigenicity 14 protein homolog, transcript variant X1
suppressor of tumorigenicity 14 protein homolog, transcript variant X2
suppressor of tumorigenicity 14 protein homolog isoform X1
suppressor of tumorigenicity 14 protein homolog isoform X2
acyl-CoA dehydrogenase family, member 8, transcript variant X3
acyl-CoA dehydrogenase family, member 8, transcript variant X2
acyl-CoA dehydrogenase family, member 8, transcript variant X1
acyl-CoA dehydrogenase family, member 8, transcript variant X4
isobutyryl-CoA dehydrogenase, mitochondrial isoform X2
isobutyryl-CoA dehydrogenase, mitochondrial isoform X3
isobutyryl-CoA dehydrogenase, mitochondrial isoform X1
isobutyryl-CoA dehydrogenase, mitochondrial isoform X4
transfer RNA glycine (anticodon UCC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
protein TESPA1-like, transcript variant X1
protein TESPA1-like, transcript variant X2
transmembrane protein 107 like, transcript variant X2
transmembrane protein 107 like, transcript variant X4
transmembrane protein 107 like, transcript variant X3
transmembrane protein 107 like, transcript variant X5
transmembrane protein 107 like, transcript variant X9
transmembrane protein 107 like, transcript variant X1
transmembrane protein 107 like, transcript variant X6
transmembrane protein 107 like, transcript variant X7
transmembrane protein 107 like, transcript variant X10
transmembrane protein 107 like, transcript variant X12
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transmembrane protein 107 like, transcript variant X13
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 14 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transmembrane protein 107 like, transcript variant X11
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transmembrane protein 107 like, transcript variant X8
transmembrane protein 107 like isoform X2
transmembrane protein 107 like isoform X1
transmembrane protein 107 like isoform X4
transmembrane protein 107 like isoform X3
NACHT, LRR and PYD domains-containing protein 3-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 31% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: NACHT, LRR and PYD domains-containing protein 3-like
uncharacterized LOC125486720, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
uncharacterized LOC125486720, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
uncharacterized protein LOC125486720 isoform X2
uncharacterized protein LOC125486720 isoform X1