Tomitella fengzijianii strain HY188 plasmid unnamed, complete sequence.
Bacteria; Actinobacteria; Corynebacteriales; Tomitella.
Tomitella cavernea sp. nov., an actinomycete isolated from soil
Submitted (19-JUL-2019) National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing 102206, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP041766.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. HGAP 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 265.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/14/2022 19:05:05\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,680\nCDSs (total) :: 3,617\nGenes (coding) :: 3,568\nCDSs (with protein) :: 3,568\nGenes (RNA) :: 63\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 3\nPseudo Genes (total) :: 49\nCDSs (without protein) :: 49\nPseudo Genes (ambiguous residues) :: 0 of 49\nPseudo Genes (frameshifted) :: 2 of 49\nPseudo Genes (incomplete) :: 46 of 49\nPseudo Genes (internal stop) :: 3 of 49\nPseudo Genes (multiple problems) :: 1 of 49\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
China: Gelan county, Changshou District, Chongqing city
COORDINATES: protein motif:HMM:NF025001.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: protein motif:HMM:NF025200.2
COORDINATES: similar to AA sequence:RefSeq:WP_005053810.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005243677.1
COORDINATES: similar to AA sequence:RefSeq:WP_005053817.1
COORDINATES: protein motif:HMM:NF012974.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009067554.1
COORDINATES: similar to AA sequence:RefSeq:WP_016644744.1
COORDINATES: protein motif:HMM:NF024700.2
COORDINATES: similar to AA sequence:RefSeq:WP_005255898.1
COORDINATES: similar to AA sequence:RefSeq:WP_017824194.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF012706.2
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF014564.2
COORDINATES: similar to AA sequence:RefSeq:WP_003934706.1
MaoC/PaaZ C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005248552.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010540040.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007533639.1
COORDINATES: similar to AA sequence:RefSeq:WP_005517080.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003939914.1
COORDINATES: similar to AA sequence:RefSeq:WP_013426673.1
COORDINATES: similar to AA sequence:RefSeq:WP_012686800.1
COORDINATES: similar to AA sequence:RefSeq:WP_005249392.1
COORDINATES: protein motif:HMM:NF020332.2
COORDINATES: similar to AA sequence:RefSeq:WP_013161009.1
COORDINATES: protein motif:HMM:NF021897.2
TraM recognition domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007035050.1
COORDINATES: similar to AA sequence:RefSeq:WP_006947290.1
COORDINATES: protein motif:HMM:NF013073.2
COORDINATES: protein motif:HMM:NF013265.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024835.2
COORDINATES: protein motif:HMM:NF013718.2