Mangrovibacillus cuniculi strain R1DC41 plasmid pBac41, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Mangrovibacillus.
Genome sequence of 2 isolates from Red Sea Mangroves
Submitted (19-JUL-2019) BESE, KAUST, 4900 KAUST, Thuwal 23955, Saudi Arabia
REFSEQ INFORMATION: The reference sequence is identical to\nCP049743.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. 1.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100X\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/14/2023 08:52:34\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,226\nCDSs (total) :: 3,105\nGenes (coding) :: 3,060\nCDSs (with protein) :: 3,060\nGenes (RNA) :: 121\nrRNAs :: 12, 12, 12 (5S, 16S, 23S)\ncomplete rRNAs :: 12, 12, 12 (5S, 16S, 23S)\ntRNAs :: 81\nncRNAs :: 4\nPseudo Genes (total) :: 45\nCDSs (without protein) :: 45\nPseudo Genes (ambiguous residues) :: 0 of 45\nPseudo Genes (frameshifted) :: 35 of 45\nPseudo Genes (incomplete) :: 12 of 45\nPseudo Genes (internal stop) :: 1 of 45\nPseudo Genes (multiple problems) :: 3 of 45\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Mangrovibacillus cuniculi
COORDINATES: similar to AA sequence:RefSeq:WP_005836831.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
RusA family crossover junction endodeoxyribonuclease
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF025945.2
siphovirus ReqiPepy6 Gp37-like family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019243635.1
COORDINATES: similar to AA sequence:RefSeq:WP_008179355.1
GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF038353.1
COORDINATES: similar to AA sequence:RefSeq:WP_019123587.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF013727.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: protein motif:HMM:NF024502.2
Arm DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014472252.1
COORDINATES: similar to AA sequence:RefSeq:WP_017473905.1
COORDINATES: similar to AA sequence:RefSeq:WP_019712254.1
COORDINATES: similar to AA sequence:RefSeq:WP_004230884.1
COORDINATES: protein motif:HMM:TIGR02681.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF022027.2
COORDINATES: similar to AA sequence:RefSeq:WP_002205089.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF021016.2
COORDINATES: similar to AA sequence:RefSeq:WP_017435115.1
COORDINATES: similar to AA sequence:RefSeq:WP_015382935.1
COORDINATES: similar to AA sequence:RefSeq:WP_015382936.1
GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011197802.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024476.2