Acetobacter vaccinii strain KACC 21233 plasmid unnamed2, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.
Submitted (01-SEP-2019) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP043508.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Date :: AUG-2019\nAssembly Method :: RS HGAP Assembly v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 272.0x\nSequencing Technology :: PacBio RSII; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/27/2023 11:30:49\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,820\nCDSs (total) :: 2,744\nGenes (coding) :: 2,700\nCDSs (with protein) :: 2,700\nGenes (RNA) :: 76\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 4\nPseudo Genes (total) :: 44\nCDSs (without protein) :: 44\nPseudo Genes (ambiguous residues) :: 0 of 44\nPseudo Genes (frameshifted) :: 26 of 44\nPseudo Genes (incomplete) :: 32 of 44\nPseudo Genes (internal stop) :: 11 of 44\nPseudo Genes (multiple problems) :: 19 of 44\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_010504831.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
type IV secretion system DNA-binding domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_010509308.1
COORDINATES: similar to AA sequence:RefSeq:WP_016738627.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_010504838.1
COORDINATES: similar to AA sequence:RefSeq:WP_010505492.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012553159.1
IS1182-like element ISGdi16 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012813326.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012813325.1
COORDINATES: similar to AA sequence:RefSeq:WP_010516858.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: protein motif:HMM:NF015210.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611329.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007396037.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017183759.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_010512275.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611612.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612078.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_076611663.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611628.1
COORDINATES: protein motif:HMM:NF024700.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002229559.1
COORDINATES: protein motif:HMM:NF014036.2
COORDINATES: similar to AA sequence:RefSeq:WP_006559317.1
COORDINATES: similar to AA sequence:RefSeq:WP_010504833.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251533.1
COORDINATES: similar to AA sequence:RefSeq:WP_003626734.1
COORDINATES: similar to AA sequence:RefSeq:WP_010504850.1
COORDINATES: similar to AA sequence:RefSeq:WP_004210547.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012987826.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_007425129.1
COORDINATES: similar to AA sequence:RefSeq:WP_012251104.1
type II toxin-antitoxin system HicA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_007004228.1
COORDINATES: protein motif:HMM:NF018381.2
COORDINATES: protein motif:HMM:NF020897.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF014069.2
COORDINATES: similar to AA sequence:RefSeq:WP_007396077.1
COORDINATES: similar to AA sequence:RefSeq:WP_007396075.1
DUF3991 and TOPRIM domain-containing protein
COORDINATES: protein motif:HMM:NF017243.2
COORDINATES: similar to AA sequence:RefSeq:WP_015074864.1
COORDINATES: similar to AA sequence:RefSeq:WP_003626994.1
COORDINATES: similar to AA sequence:RefSeq:WP_015074013.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737604.1
COORDINATES: similar to AA sequence:RefSeq:WP_006559728.1
COORDINATES: similar to AA sequence:RefSeq:WP_003618947.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284720.1
COORDINATES: similar to AA sequence:RefSeq:WP_015074017.1
COORDINATES: similar to AA sequence:RefSeq:WP_016738615.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007284624.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284623.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251460.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003618841.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284166.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
DHA2 family efflux MFS transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_003630719.1
COORDINATES: similar to AA sequence:RefSeq:WP_007400720.1
type II toxin-antitoxin system CcdA family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_006697869.1
COORDINATES: similar to AA sequence:RefSeq:WP_012702113.1
COORDINATES: similar to AA sequence:RefSeq:WP_008207459.1
COORDINATES: similar to AA sequence:RefSeq:WP_010505628.1
COORDINATES: similar to AA sequence:RefSeq:WP_010505630.1
COORDINATES: similar to AA sequence:RefSeq:WP_003618816.1
COORDINATES: similar to AA sequence:RefSeq:WP_011252870.1
phosphate-starvation-inducible PsiE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010511786.1
COORDINATES: similar to AA sequence:RefSeq:WP_004718529.1
COORDINATES: similar to AA sequence:RefSeq:WP_007396072.1
COORDINATES: similar to AA sequence:RefSeq:WP_010511887.1
COORDINATES: similar to AA sequence:RefSeq:WP_003630451.1
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_010504724.1
COORDINATES: similar to AA sequence:RefSeq:WP_007400689.1
COORDINATES: similar to AA sequence:RefSeq:WP_003571859.1
COORDINATES: protein motif:HMM:TIGR03454.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251433.1
COORDINATES: protein motif:HMM:NF016876.2
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_007284652.1
COORDINATES: similar to AA sequence:RefSeq:WP_012813340.1
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_013481091.1
GO:0004540 - ribonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012476889.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611976.1
COORDINATES: protein motif:HMM:NF012245.2
COORDINATES: similar to AA sequence:RefSeq:WP_019088886.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: similar to AA sequence:RefSeq:WP_010504824.1