Acetobacter vaccinii strain KACC 21233 plasmid unnamed1, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.
Submitted (01-SEP-2019) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP043507.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Date :: AUG-2019\nAssembly Method :: RS HGAP Assembly v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 272.0x\nSequencing Technology :: PacBio RSII; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/27/2023 11:30:49\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,820\nCDSs (total) :: 2,744\nGenes (coding) :: 2,700\nCDSs (with protein) :: 2,700\nGenes (RNA) :: 76\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 4\nPseudo Genes (total) :: 44\nCDSs (without protein) :: 44\nPseudo Genes (ambiguous residues) :: 0 of 44\nPseudo Genes (frameshifted) :: 26 of 44\nPseudo Genes (incomplete) :: 32 of 44\nPseudo Genes (internal stop) :: 11 of 44\nPseudo Genes (multiple problems) :: 19 of 44\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:TIGR03021.1
GO:0009297 - pilus assembly [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: protein motif:HMM:NF012694.2
type II secretion system F family protein
COORDINATES: protein motif:HMM:NF020384.2
COORDINATES: protein motif:HMM:NF016785.2
shufflon system plasmid conjugative transfer pilus tip adhesin PilV
COORDINATES: similar to AA sequence:RefSeq:WP_010504812.1
transglycosylase SLT domain-containing protein
COORDINATES: protein motif:HMM:NF028126.2
Members of this family include DotD of type IVB secretion systems and TraH of plasmid conjugative plasmid systems, both lipoproteins; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011251514.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011251515.1
COORDINATES: similar to AA sequence:RefSeq:WP_010504822.1
COORDINATES: similar to AA sequence:RefSeq:WP_010504824.1
COORDINATES: similar to AA sequence:RefSeq:WP_010504831.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012227543.1
COORDINATES: similar to AA sequence:RefSeq:WP_010505746.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012812328.1
COORDINATES: similar to AA sequence:RefSeq:WP_019088886.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011950555.1
COORDINATES: similar to AA sequence:RefSeq:WP_019087321.1
COORDINATES: protein motif:HMM:NF023737.2
COORDINATES: similar to AA sequence:RefSeq:WP_019922448.1
COORDINATES: similar to AA sequence:RefSeq:WP_003619036.1
COORDINATES: similar to AA sequence:RefSeq:WP_010666372.1
lipocalin-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003619033.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011530435.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015509.2
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611908.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014849395.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: protein motif:HMM:NF012245.2
COORDINATES: similar to AA sequence:RefSeq:WP_010668421.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_014106724.1
COORDINATES: similar to AA sequence:RefSeq:WP_019460438.1
COORDINATES: similar to AA sequence:RefSeq:WP_012817663.1
GO:0016301 - kinase activity [Evidence IEA]
type II toxin-antitoxin system death-on-curing family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012386244.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251533.1
COORDINATES: similar to AA sequence:RefSeq:WP_010504850.1
COORDINATES: similar to AA sequence:RefSeq:WP_008830520.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012987826.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_020566243.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_019088706.1
COORDINATES: protein motif:HMM:NF018381.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF014069.2
COORDINATES: similar to AA sequence:RefSeq:WP_007396077.1
COORDINATES: similar to AA sequence:RefSeq:WP_007396075.1
DUF3991 and TOPRIM domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012223140.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017115701.1
COORDINATES: similar to AA sequence:RefSeq:WP_004718529.1
COORDINATES: similar to AA sequence:RefSeq:WP_007396072.1
COORDINATES: similar to AA sequence:RefSeq:WP_043766426.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017709411.1
COORDINATES: similar to AA sequence:RefSeq:WP_019410446.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010933903.1
COORDINATES: similar to AA sequence:RefSeq:WP_008594130.1
COORDINATES: similar to AA sequence:RefSeq:WP_005263367.1
COORDINATES: similar to AA sequence:RefSeq:WP_013260830.1
type I restriction endonuclease subunit R
COORDINATES: similar to AA sequence:RefSeq:WP_012813353.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612078.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_012382917.1
COORDINATES: similar to AA sequence:RefSeq:WP_010513246.1
COORDINATES: similar to AA sequence:RefSeq:WP_013635080.1
COORDINATES: similar to AA sequence:RefSeq:WP_016984130.1
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_016149473.1
type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family
COORDINATES: similar to AA sequence:RefSeq:WP_014104060.1
COORDINATES: similar to AA sequence:RefSeq:WP_012812344.1
COORDINATES: similar to AA sequence:RefSeq:WP_012812343.1
COORDINATES: similar to AA sequence:RefSeq:WP_007397868.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019817963.1
COORDINATES: similar to AA sequence:RefSeq:WP_014466442.1
type I restriction-modification system endonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_011474069.1
COORDINATES: similar to AA sequence:RefSeq:WP_011240015.1
COORDINATES: similar to AA sequence:RefSeq:WP_012553159.1
IS1182-like element ISGdi16 family transposase
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012553437.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284623.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284624.1
COORDINATES: similar to AA sequence:RefSeq:WP_016738615.1
COORDINATES: similar to AA sequence:RefSeq:WP_015074017.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284720.1
COORDINATES: similar to AA sequence:RefSeq:WP_003618947.1
COORDINATES: similar to AA sequence:RefSeq:WP_006559728.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737604.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284506.1
COORDINATES: similar to AA sequence:RefSeq:WP_003619015.1
COORDINATES: similar to AA sequence:RefSeq:WP_015074864.1
COORDINATES: similar to AA sequence:RefSeq:WP_010187967.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611877.1
COORDINATES: protein motif:HMM:NF024573.2
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: protein motif:HMM:NF025056.2
GO:0005515 - protein binding [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006116747.1
COORDINATES: similar to AA sequence:RefSeq:WP_006115877.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006115878.1
COORDINATES: similar to AA sequence:RefSeq:WP_015075052.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010505306.1
COORDINATES: similar to AA sequence:RefSeq:WP_010505304.1
COORDINATES: similar to AA sequence:RefSeq:WP_010505302.1
COORDINATES: similar to AA sequence:RefSeq:WP_010505300.1
COORDINATES: similar to AA sequence:RefSeq:WP_007191541.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251437.1
COORDINATES: similar to AA sequence:RefSeq:WP_006560250.1
COORDINATES: similar to AA sequence:RefSeq:WP_010501677.1
COORDINATES: protein motif:HMM:TIGR04346.1
COORDINATES: similar to AA sequence:RefSeq:WP_010505288.1
COORDINATES: similar to AA sequence:RefSeq:WP_010505286.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251495.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251496.1
DotH/IcmK family type IV secretion protein
COORDINATES: protein motif:HMM:NF015688.2
COORDINATES: similar to AA sequence:RefSeq:WP_010504788.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251502.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_011251503.1
toxin co-regulated pilus biosynthesis Q family protein