Sulfurimonas lithotrophica strain GYSZ_1 plasmid unnamed, complete sequence.
type: Entry
definition: Sulfurimonas lithotrophica strain GYSZ_1 plasmid unnamed, complete sequence.
sequence version: NZ_CP043618.1
sequence date: 2023-05-28
sequence: sequence
division: CON
label: NZ_CP043618.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN12085964
keyword: RefSeq
source: Sulfurimonas lithotrophica
organism: Sulfurimonas lithotrophica
taxonomy: Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Sulfurimonadaceae; Sulfurimonas.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP043618.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: PacBio RSIII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/28/2023 09:14:37\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,447\nCDSs (total) :: 2,386\nGenes (coding) :: 2,379\nCDSs (with protein) :: 2,379\nGenes (RNA) :: 61\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 3\nPseudo Genes (total) :: 7\nCDSs (without protein) :: 7\nPseudo Genes (ambiguous residues) :: 0 of 7\nPseudo Genes (frameshifted) :: 2 of 7\nPseudo Genes (incomplete) :: 5 of 7\nPseudo Genes (internal stop) :: 0 of 7\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 36597
topology: circular
so has quality: SO_0000988
location: 1..36597
location: region:1-36597:1
RO_0002162: 2590022

NZ_CP043618
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN12085964
type: BioSample
SIO_000068: biosample

1
title: Sulfurimonas gotlandica sp. nov., a chemoautotrophic and psychrotolerant epsilonproteobacterium isolated from a pelagic redoxcline, and an emended description of the genus Sulfurimonas
author: Wang, S.
author: Jiang, L.
author: Shao, S.
journal: Unpublished

2
title: Direct Submission
author: Wang, S.
author: Jiang, L.
author: Shao, S.
journal: Submitted (04-SEP-2019) Key Laboratory of Marine Biogenetic Resources, Third Institute of Oceanography, State Oceanic Administration, Daxue Rode 178#, Xiamen, Fujian 361005, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36597:1
position: 36597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-36597:1:source
so part of: sequence
organism: Sulfurimonas lithotrophica
mol type: genomic DNA
strain: GYSZ_1
isolation source: seawater
culture collection: KCTC:52323
type material: type material of Sulfurimonas lithotrophica
plasmid: unnamed
country: China: Mountain Guanyin (Fujian)
collection date: 2018-12
collected by: Shasha Wang

2590022
type: Taxonomy
SIO_000068: taxonomy

FJR48_RS11895
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS11895
old locus tag: FJR48_11895
so part of: sequence
location: 106..339
location: region:106-339:1
so has part: feature:106-339:1:exon
subclass of: SO_0000010

position:106:1
position: 106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:339:1
position: 339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:106-339:1:exon

FJR48_RS11895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS11895
old locus tag: FJR48_11895
inference: COORDINATES: protein motif:HMM:NF037866.2
GO function: GO:0004518 - nuclease activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HP0268 family nuclease
translation: MCKNRVRCKPKKADIKKIEESVEKNGSVIFYFDRENSHKDLLELQDYFEEKGKGFYMNEVKFGLSDNEYMYQVHIID
SIO_010081: FJR48_RS11895
subclass of: SO_0000673
so part of: FJR48_RS11895
location: 106..339
location: region:106-339:1
so has part: feature:106-339:1:exon

WP_152308454.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:106-339:1:exon

FJR48_RS11900
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
gene: miaB
locus tag: FJR48_RS11900
old locus tag: FJR48_11900
so part of: sequence
location: 351..1631
location: region:351-1631:1
so has part: feature:351-1631:1:exon
subclass of: SO_0000010

position:351:1
position: 351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1631:1
position: 1631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:351-1631:1:exon

FJR48_RS11900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
gene: miaB
locus tag: FJR48_RS11900
old locus tag: FJR48_11900
EC number: 2.8.4.3
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008336360.1
GO function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0016782 - transferase activity, transferring sulphur-containing groups [Evidence IEA]
GO process: GO:0006400 - tRNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB
translation: MSKKVFIETLGCAMNERDTEHMLAELNEKENFSQTGDFKEADLILINTCSVREKPVSKLFSELGIFNKKKKENAKIGVCGCTASHLGKDIIKRAPYVDFVLGARNVSKITEVLHKPKAVEVDINYDESEFAFKDFRTSLYKAYINISIGCDKQCTYCIVPKTRGEEISIPLNLIVDEANRAVNSGAKEIFLLGQNVNNYGRRFSGKHDKVNFTNLLQELSKIEGLKRIRFTSPHPFHMDDEFIEEFAKNPKICKSMHMPLQSGSTKVLKDMKRGYSKEWFLNRVEKLRSMVPDVSISTDIIVAFPGESDEDFNDTIDVMDKVKFDQIFSFKYSARPETEAEHFTNVVNPEIASQRLTFLQDLYTKHLDEKMASKLGNIYEVYFEDLNADGYVSGRSDNNLVIKAKGSEELLGKFRKVKVTSIGRSI
SIO_010081: FJR48_RS11900
subclass of: SO_0000673
so part of: FJR48_RS11900
location: 351..1631
location: region:351-1631:1
so has part: feature:351-1631:1:exon

WP_152308455.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:351-1631:1:exon

FJR48_RS11905
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS11905
old locus tag: FJR48_11905
so part of: sequence
location: 1635..2267
location: region:1635-2267:1
so has part: feature:1635-2267:1:exon
subclass of: SO_0000010

position:1635:1
position: 1635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2267:1
position: 2267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1635-2267:1:exon

FJR48_RS11905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS11905
old locus tag: FJR48_11905
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008336925.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lysophospholipid acyltransferase family protein
translation: MKLLTKQQKRSLALLIIPFIGSLIIRFLYFTNKKKFHAPDTLTDESFIMACWHGELLMIPYAYLRYKEIPSVKLFISEHFDGELIAKTLGFFGFGTIRGSTTRGGAKALIQAIKEIKSGSDIGITPDGPKGPRHQVHDGIIAIAQKTKKKIVLVEIKPSKYWQLKSWDKFIVPKPFGELNYFISEPIDVSELEFEEARKLIKEGLLSHEH
SIO_010081: FJR48_RS11905
subclass of: SO_0000673
so part of: FJR48_RS11905
location: 1635..2267
location: region:1635-2267:1
so has part: feature:1635-2267:1:exon

WP_241856057.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1635-2267:1:exon

FJR48_RS11910
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS11910
old locus tag: FJR48_11910
so part of: sequence
location: 2257..2712
location: region:2257-2712:1
so has part: feature:2257-2712:1:exon
subclass of: SO_0000010

position:2257:1
position: 2257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2712:1
position: 2712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2257-2712:1:exon

FJR48_RS11910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS11910
old locus tag: FJR48_11910
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008336601.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNTKLVIILFSLFTVLFMALYFYFNPSYQKSLQAKYYYEMGDYDEAYADAKEAFELDLYNRMAATIMAQSKTSLKYVNYIKDAKEYMKQIDEIVSKDDIKEADKAKIRLICEIMNSAYVKLAPSVITDKELVENAAYYHAGFEQLLEKVNR
SIO_010081: FJR48_RS11910
subclass of: SO_0000673
so part of: FJR48_RS11910
location: 2257..2712
location: region:2257-2712:1
so has part: feature:2257-2712:1:exon

WP_241856056.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2257-2712:1:exon

FJR48_RS12375
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS12375
so part of: sequence
location: 2693..3166
location: region:2693-3166:1
so has part: feature:2693-3166:1:exon
subclass of: SO_0000010

position:2693:1
position: 2693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3166:1
position: 3166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2693-3166:1:exon

FJR48_RS12375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS12375
inference: COORDINATES: protein motif:HMM:NF014898.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MKKLIDKKRKDFCEYLENIRGYSDLSIKTYNDAIREALSYIEILEENGEIIFDLMPFRLKISELNSKTISKKLSAIRSFSEYLNEKGMKIVLKSDSSVKVAKTLPKPISHKHIVEALSFADEQESLVVSLLYTLGLRISELEKLKLEDISEGWVRVL
SIO_010081: FJR48_RS12375
subclass of: SO_0000673
so part of: FJR48_RS12375
location: 2693..3166
location: region:2693-3166:1
so has part: feature:2693-3166:1:exon

WP_241856223.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2693-3166:1:exon

FJR48_RS12380
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS12380
so part of: sequence
location: 3195..3533
location: region:3195-3533:1
so has part: feature:3195-3533:1:exon
subclass of: SO_0000010

position:3195:1
position: 3195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3533:1
position: 3533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3195-3533:1:exon

FJR48_RS12380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS12380
inference: COORDINATES: protein motif:HMM:NF012798.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MKNIKDDIDSYIQNNNPKVFLFEKNDEALSQNSLRYIIAKVFKRINLKVSPHQLRHSYATELLNANAPIADVSELLGHSSMATTQIYTKLGSALKKQNYNNSHPLCGVNSAE
SIO_010081: FJR48_RS12380
subclass of: SO_0000673
so part of: FJR48_RS12380
location: 3195..3533
location: region:3195-3533:1
so has part: feature:3195-3533:1:exon

WP_241856225.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3195-3533:1:exon

FJR48_RS11920
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS11920
old locus tag: FJR48_11920
so part of: sequence
location: 3523..3903
location: region:3523-3903:1
so has part: feature:3523-3903:1:exon
subclass of: SO_0000010

position:3523:1
position: 3523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3903:1
position: 3903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3523-3903:1:exon

FJR48_RS11920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS11920
old locus tag: FJR48_11920
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLSKFKTYLYNNIYINIVQSSKDTCIYVEEIDYKGLSNNYEEIFNTSNKSEIYEYIKTFISRSPINYVSILDPSLTQGAAPTCSHHEIKKYCTLEEFEQICVDDKWSYYTSKLDLLDIQGRYKKQA
SIO_010081: FJR48_RS11920
subclass of: SO_0000673
so part of: FJR48_RS11920
location: 3523..3903
location: region:3523-3903:1
so has part: feature:3523-3903:1:exon

WP_152308456.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3523-3903:1:exon

FJR48_RS11925
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS11925
old locus tag: FJR48_11925
so part of: sequence
location: 3927..4544
location: region:3927-4544:1
so has part: feature:3927-4544:1:exon
subclass of: SO_0000010

position:3927:1
position: 3927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4544:1
position: 4544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3927-4544:1:exon

FJR48_RS11925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS11925
old locus tag: FJR48_11925
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLHKFFADKTKGEISLFILVNEDYMALSVFESSKLLFASLLDMQKDDDSNDELIMDVDDDEELILDDIKNNSVDLEDIDVDDIEGLDEIDELDDLETFDDMDDFDASDEHEEHLSMSDKQMEDSVEQNSFGEDYHRFSLIQSAVNTFYKDSKFESKFIQSVYVADGIGLSNEFKKFLEEEMFLSVFIRKMDIAQELSELAKAEKK
SIO_010081: FJR48_RS11925
subclass of: SO_0000673
so part of: FJR48_RS11925
location: 3927..4544
location: region:3927-4544:1
so has part: feature:3927-4544:1:exon

WP_152308457.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3927-4544:1:exon

FJR48_RS11930
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS11930
old locus tag: FJR48_11930
so part of: sequence
location: 4541..5095
location: region:4541-5095:1
so has part: feature:4541-5095:1:exon
subclass of: SO_0000010

position:4541:1
position: 4541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5095:1
position: 5095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4541-5095:1:exon

FJR48_RS11930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS11930
old locus tag: FJR48_11930
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013326350.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRYSYIKPRKKSLLTAEMKLLFAFFSISLFMLLGTYIFLLYKDMKFLEDKQNIAMEKTNLQKNIKDMESKIAYIDTKNITSAKIFTQNSVLKDSIKNLFDLVPQRITLSQAKLLKNGLVLYGITPNKDVYNFMLHAPLRSIFHETYSSFYPTEGGWLRFVSTNYMNEDELSESSVESDSEKKDE
SIO_010081: FJR48_RS11930
subclass of: SO_0000673
so part of: FJR48_RS11930
location: 4541..5095
location: region:4541-5095:1
so has part: feature:4541-5095:1:exon

WP_152308458.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4541-5095:1:exon

FJR48_RS11935
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS11935
old locus tag: FJR48_11935
so part of: sequence
location: 5088..5624
location: region:5088-5624:1
so has part: feature:5088-5624:1:exon
subclass of: SO_0000010

position:5088:1
position: 5088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5624:1
position: 5624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5088-5624:1:exon

FJR48_RS11935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS11935
old locus tag: FJR48_11935
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011373355.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNNISRQSIYILILSIILLVFVLLFSFLALIPEGKKYRIQRVQLGKEYRDLKRYQDFEAQTFEELKILQADNRHIITAFDTVFDQDRFIKKYKALFNTLELTKAQNLEKEDGFSVYNVKTSSKISSPATFYKFLDEVNKSDWIVAVNFPIDFKREGEVINSSFQMKVYSNSKDSNTSK
SIO_010081: FJR48_RS11935
subclass of: SO_0000673
so part of: FJR48_RS11935
location: 5088..5624
location: region:5088-5624:1
so has part: feature:5088-5624:1:exon

WP_152307905.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5088-5624:1:exon

FJR48_RS11940
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
gene: tilS
locus tag: FJR48_RS11940
old locus tag: FJR48_11940
so part of: sequence
location: complement(5588..6577)
location: region:5588-6577:-1
so has part: feature:5588-6577:-1:exon
subclass of: SO_0000010

position:5588:-1
position: 5588
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6577:-1
position: 6577
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5588-6577:-1:exon

FJR48_RS11940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
gene: tilS
locus tag: FJR48_RS11940
old locus tag: FJR48_11940
EC number: 6.3.4.19
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008335686.1
GO function: GO:0016879 - ligase activity, forming carbon-nitrogen bonds [Evidence IEA]
GO process: GO:0006400 - tRNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tRNA lysidine(34) synthetase TilS
translation: MLKSDVLEHLKSSKNLLAFSAGVDSSALLCLLLDANIKFDIAIVDYGLRVQSKDEVAYAKELADKYNIKCFIHKAEKIDTNFEASARKIRYDFFESLIQDNGYDNLLTAHHLGDRFEWMLMQFCKGAGCAELSGMKSVQNKKNYKLIRPLLHLDKSELLEYLKNNKIKYFEDKSNFDESYTRNSFRHGYTNPLISEHLDGIKKSFEYIDADIDALIIETDLNVKNDFAYFISTKNKRSDIYAIDKYLKSQNYMLSANERELLKTNNTLVVGRKFVVNFHKEYIFIAPYIDKDTKMSKEFKERMRKLKIEPKLRAYFYNHLEVFESLELE
SIO_010081: FJR48_RS11940
subclass of: SO_0000673
so part of: FJR48_RS11940
location: complement(5588..6577)
location: region:5588-6577:-1
so has part: feature:5588-6577:-1:exon

WP_152307904.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5588-6577:-1:exon

FJR48_RS11945
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
gene: rimO
locus tag: FJR48_RS11945
old locus tag: FJR48_11945
so part of: sequence
location: complement(6586..7908)
location: region:6586-7908:-1
so has part: feature:6586-7908:-1:exon
subclass of: SO_0000010

position:6586:-1
position: 6586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7908:-1
position: 7908
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6586-7908:-1:exon

FJR48_RS11945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
gene: rimO
locus tag: FJR48_RS11945
old locus tag: FJR48_11945
EC number: 2.8.4.4
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008336270.1
GO function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0008172 - S-methyltransferase activity [Evidence IEA]; GO:0016782 - transferase activity, transferring sulphur-containing groups [Evidence IEA]
GO process: GO:0018339 - peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 30S ribosomal protein S12 methylthiotransferase RimO
translation: MGNKLHVVSLGCNKNLVDTEVMMGRLKNFSLTDDNADADVIIVNTCGFIDAAKEESVNTILNLHDARKEDSILVVAGCLSERYREELAEEMPEVDIFTGVGDYERIDELLAAKESRFSDEVYLIDGAERVVTGSTYHAYIKLSEGCNQACSFCAIPSFKGKLNSRSLDSIAKEVESLVKQGYYDFSFISQDSSSYLRDQNIQDGLSLLIQRIELIEGVKSARILYLYPSTTTIKLLQNIGRSKIFHNYFDMPIQHINDDMLRIMKRGFGKDKTIELLDYMKSLPNSFIRTSFIVGHPGETSEMFEEMKEFAENFGFDRINIFEYSDEETTFAYDMKDKKIDKEIIHDRAEILAEVKAEVLQKSLMAEIGKEVELVIDGESDEHEFLLSAKELIWAPDIDGEIYVNDRTDDEAELEFGKVYKAKITSVVGDILTATVDNSK
SIO_010081: FJR48_RS11945
subclass of: SO_0000673
so part of: FJR48_RS11945
location: complement(6586..7908)
location: region:6586-7908:-1
so has part: feature:6586-7908:-1:exon

WP_152307903.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6586-7908:-1:exon

FJR48_RS11950
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS11950
old locus tag: FJR48_11950
so part of: sequence
location: 7953..9101
location: region:7953-9101:1
so has part: feature:7953-9101:1:exon
subclass of: SO_0000010

position:7953:1
position: 7953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9101:1
position: 9101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7953-9101:1:exon

FJR48_RS11950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS11950
old locus tag: FJR48_11950
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008335028.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aminoacetone oxidase family FAD-binding enzyme
translation: MKIYDIVILGGGASSLMCAAHLNKSLNVAIIDANDKLAKKLKISGGGKCNITNKYVDVRNFDGDADLVKSVLERFDRDDMLQFLSNNKIELELRKNRYYFCKKSSDDIINVLKKKSSFAKVHLNTKVLDVKKSDEIFEINTDKGVFKTNSLVVATGGESFKNIGASDIGLQIAKSFDIEVKNFTPALAGLTVQKEQFWMKELSGLSCYVNIKVNDRVIKEEMLFAHKGISGPAVLSASLYWRKGDISIDFLPNENIPDLIKGSKKLISSVIPLPKRLSKALLEAIYVKDTECKKVDAKTKEKLLRLHNYSFAPAGNFGFSKAEVSKGGIISNELNFVTFESKKVKKLYFIGEVVDVTGELGGYNFQWAFGSGMICAKNINYN
SIO_010081: FJR48_RS11950
subclass of: SO_0000673
so part of: FJR48_RS11950
location: 7953..9101
location: region:7953-9101:1
so has part: feature:7953-9101:1:exon

WP_152307902.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7953-9101:1:exon

FJR48_RS11955
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS11955
old locus tag: FJR48_11955
so part of: sequence
location: 9147..9734
location: region:9147-9734:1
so has part: feature:9147-9734:1:exon
subclass of: SO_0000010

position:9147:1
position: 9147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9734:1
position: 9734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9147-9734:1:exon

FJR48_RS11955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS11955
old locus tag: FJR48_11955
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: outer membrane beta-barrel protein
translation: MTDRLKKLLVAVLFAASASYAGSNDYTYDSSSLVAIEGGFTSMEVKNPSNLVTKDDFGTVGLKIGAQTRNVRMFVSFRNGFIDDDNYNYDYFYMYGAELQYLFNFSTSANFFIGASAGRISLRFDDATLNQRDYATNYTGGDLGFNIHMNENFDFELGARFINLLDSEHTLSGVKYTFDDITMGYMSIIFKYQMD
SIO_010081: FJR48_RS11955
subclass of: SO_0000673
so part of: FJR48_RS11955
location: 9147..9734
location: region:9147-9734:1
so has part: feature:9147-9734:1:exon

WP_152307901.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9147-9734:1:exon

FJR48_RS11960
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS11960
old locus tag: FJR48_11960
so part of: sequence
location: complement(9746..9820)
location: region:9746-9820:-1
so has part: feature:9746-9820:-1:exon
subclass of: SO_0000663

position:9746:-1
position: 9746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9820:-1
position: 9820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9746-9820:-1:exon

FJR48_RS11960
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 2590022
locus tag: FJR48_RS11960
old locus tag: FJR48_11960
product: tRNA-Val
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(9786..9788),aa:Val,seq:gac)
SIO_010081: FJR48_RS11960
subclass of: SO_0000673
so part of: FJR48_RS11960
location: complement(9746..9820)
location: region:9746-9820:-1
so has part: feature:9746-9820:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9746-9820:-1:exon

FJR48_RS11965
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
gene: pckA
locus tag: FJR48_RS11965
old locus tag: FJR48_11965
so part of: sequence
location: 9946..11526
location: region:9946-11526:1
so has part: feature:9946-11526:1:exon
subclass of: SO_0000010

position:9946:1
position: 9946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11526:1
position: 11526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9946-11526:1:exon

FJR48_RS11965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
gene: pckA
locus tag: FJR48_RS11965
old locus tag: FJR48_11965
EC number: 4.1.1.49
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008336972.1
GO function: GO:0004612 - phosphoenolpyruvate carboxykinase (ATP) activity [Evidence IEA]
GO process: GO:0006094 - gluconeogenesis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phosphoenolpyruvate carboxykinase (ATP)
translation: MNVAELENIGLKNVGEVFHNLSYDELIEHEVNNKECAVTKKGATAVDTGIFTGRSPKDKYFVERDPSNKYIAWGDVNQKVSAEIFDELLEVAQKQLSGKNLYVTDVFCGSSAASKRSVRFISEIAWQSHFVKNMFIRPSSAELEVFKEDFVVLNACKAVNEKWEEHGMNSEVFVLFDVERNMAIIGGTWYGGEMKKGIFSMMNYWLPLEGKLPMHCSANVGAEGDTALFFGLSGTGKTTLSTDPKRALIGDDEHGWDNHGVFNFEGGCYAKVINLDEKSEPEIYGAIKTNALLENVVMYGEGEVDYEDSTKTENTRVSYPIEHIVNHKPDLMAGHPQNIIFLTADAFGVLPPVSKLTRDQAMYYFLSGYTAKVAGTERGITEPVATFSACFGEAFLPLHPTVYAKLLGEKIDKHNVNVYLVNTGWTGGKYGVGHRMSIKDTRACINAILDGSINESEFDTTKTFRLQVPKTLGDINPDILNPRNAWADKDEFDRTRDELAEMFVENYKRYKDGNEDYSPYGPIIGS
SIO_010081: FJR48_RS11965
subclass of: SO_0000673
so part of: FJR48_RS11965
location: 9946..11526
location: region:9946-11526:1
so has part: feature:9946-11526:1:exon

WP_152308459.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9946-11526:1:exon

FJR48_RS11970
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS11970
old locus tag: FJR48_11970
so part of: sequence
location: complement(11577..12146)
location: region:11577-12146:-1
so has part: feature:11577-12146:-1:exon
subclass of: SO_0000010

position:11577:-1
position: 11577
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12146:-1
position: 12146
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11577-12146:-1:exon

FJR48_RS11970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS11970
old locus tag: FJR48_11970
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013461078.1
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DedA family protein
translation: MEDTFSNLATYGYIGLFLYSLGGGFVALLGAGVLSYMGKMDLTTSLFIAFIANALGDVMLFYMARYQKSMMMDGLRKHRRKLALSHALMKKYGSWIILFQKFVYGIKTLIPIAIGLTKYDFKKFAILNFFSAGVWALVVGLGAYYSGAPLIKLAELIGEKPWIAPLLLVTFGGLLWLYMEKATKKKVKK
SIO_010081: FJR48_RS11970
subclass of: SO_0000673
so part of: FJR48_RS11970
location: complement(11577..12146)
location: region:11577-12146:-1
so has part: feature:11577-12146:-1:exon

WP_152307900.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11577-12146:-1:exon

FJR48_RS11975
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
gene: uvrB
locus tag: FJR48_RS11975
old locus tag: FJR48_11975
so part of: sequence
location: complement(12156..14138)
location: region:12156-14138:-1
so has part: feature:12156-14138:-1:exon
subclass of: SO_0000010

position:12156:-1
position: 12156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14138:-1
position: 14138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12156-14138:-1:exon

FJR48_RS11975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
gene: uvrB
locus tag: FJR48_RS11975
old locus tag: FJR48_11975
EC number: 3.1.25.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013326356.1
GO component: GO:0009380 - excinuclease repair complex [Evidence IEA]
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO process: GO:0006289 - nucleotide-excision repair [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: excinuclease ABC subunit UvrB
translation: MKKEALFKVESPYQPAGDQPQAIEKLSKSILDGNRYQTLEGVTGSGKTHTMARVIEKVQRPTIIMTHNKTLAAQLYSEFRQFFPHNHVEYFVSYYDYYQPEAYIPRQDLFIEKDSAINDELERMRLSSTANLLSYDDVIVVASVSANYGLGDPEEYENMVQALEVGDEIEQKKLLLRLVEMGYTRNDSYFDSGHIRVNGESLDVYPPYFEQEAIRIEFFGDEIEAIYTFDIIDNKKLEEHKSFTIYATSQFSVRAEKMAIAIKRIEEELDERLDYFQKENKLVEYQRLKQRVEFDLEMLETTGSCKGVENYSRLLTNKKPGEAPYTLLDYFELHHKDYLVIVDESHVSLPQYRGMYAGDRARKEVLVEYGFRLPSALDNRPLKIDEYINKAPHYLFVSATPAEQELELSAVKAEQIIRPTGLLDPVIEVKSSDNQVEDIHDEIKKVTAKNERVLITVLTKKMAEALTKYLADLGIKVQYMHSDIDTIERNQIIRSLRLGEFDVLIGINLLREGLDLPEVSLVGILDADKEGFLRSETALIQTIGRGARNANGRVILYANKITGSMQRAMGTTKHRREIQDAFNKEHGITPKTTIRALDESLKLEDHGGIYQKNKKLDKMPASERKAIIKELSLKMKDAAKNLEFEEAARLRDEIAKIKKL
SIO_010081: FJR48_RS11975
subclass of: SO_0000673
so part of: FJR48_RS11975
location: complement(12156..14138)
location: region:12156-14138:-1
so has part: feature:12156-14138:-1:exon

WP_152307899.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12156-14138:-1:exon

FJR48_RS11980
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS11980
old locus tag: FJR48_11980
so part of: sequence
location: complement(14168..15424)
location: region:14168-15424:-1
so has part: feature:14168-15424:-1:exon
subclass of: SO_0000010

position:14168:-1
position: 14168
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15424:-1
position: 15424
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14168-15424:-1:exon

FJR48_RS11980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS11980
old locus tag: FJR48_11980
inference: COORDINATES: protein motif:HMM:TIGR03605.1
GO function: GO:0016491 - oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SagB family peptide dehydrogenase
translation: MPIFHQQTKHSYMSVRKNSHFLDWLSQPKNHKIYPHFNQRFKIENYDELKNLNLIGGITFEKKYPNGVYHLRSVPSAGGLYPCEVYIQIRGIKGLLDGIYHYEPYSESLTLLQEIDEDGVEYYFKNKKQEKGLVFLISSVYFRSSWKYRDRSIRYILLDSGHQLGSIYAALSVMQRDNEVIFDFDKLSLNSVFGFRNDEMFTCAIKSSFAQDKDVSKLRQSLPFVSGCDYLETNSFIEDAYKQTANYEDVTANMPDFFENIPKEQLKMAILNRRSIRAFRQYSMKRDEFEFIMKYICSFANKNNIDIFYTLHLVENMECGLYKNDELIKKGDFRSKSRYLALEQNLGGQSGVTFFFTSNEVKKYHKVNILSGFLAQIIYIKSDLQGIGCSGIGAYYDDETKEFLETKNNILYMLAIGR
SIO_010081: FJR48_RS11980
subclass of: SO_0000673
so part of: FJR48_RS11980
location: complement(14168..15424)
location: region:14168-15424:-1
so has part: feature:14168-15424:-1:exon

WP_188108572.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14168-15424:-1:exon

FJR48_RS11985
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS11985
old locus tag: FJR48_11985
so part of: sequence
location: 15588..15980
location: region:15588-15980:1
so has part: feature:15588-15980:1:exon
subclass of: SO_0000010

position:15588:1
position: 15588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15980:1
position: 15980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15588-15980:1:exon

FJR48_RS11985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS11985
old locus tag: FJR48_11985
inference: COORDINATES: protein motif:HMM:NF012272.2
GO function: GO:0020037 - heme binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: globin domain-containing protein
translation: MKLSQKTIDTVKRIANPVSVNAESIAKRMYEILFEKHPEMEKLFDEAGANHHKKLALAVIAFVDYIDDLDVLENTLEKIAVEHVKKNIKPEHYPLIEKSILKAIKDVLGDVATNEVIDAWREAFSFYLKY
SIO_010081: FJR48_RS11985
subclass of: SO_0000673
so part of: FJR48_RS11985
location: 15588..15980
location: region:15588-15980:1
so has part: feature:15588-15980:1:exon

WP_241856227.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15588-15980:1:exon

FJR48_RS11990
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS11990
old locus tag: FJR48_11990
so part of: sequence
location: complement(16029..16283)
location: region:16029-16283:-1
so has part: feature:16029-16283:-1:exon
subclass of: SO_0000010

position:16029:-1
position: 16029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16283:-1
position: 16283
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16029-16283:-1:exon

FJR48_RS11990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS11990
old locus tag: FJR48_11990
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008336080.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKFLIFTILFNTVLFSSSNTNKQEKRTDKHIQKAIEKEKKYAKEQTFYMQKDYDLKSAEINPDSLSSIPNIEPDNDFDMDDVY
SIO_010081: FJR48_RS11990
subclass of: SO_0000673
so part of: FJR48_RS11990
location: complement(16029..16283)
location: region:16029-16283:-1
so has part: feature:16029-16283:-1:exon

WP_241856055.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16029-16283:-1:exon

FJR48_RS11995
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS11995
old locus tag: FJR48_11995
so part of: sequence
location: 16428..16655
location: region:16428-16655:1
so has part: feature:16428-16655:1:exon
subclass of: SO_0000010

position:16428:1
position: 16428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16655:1
position: 16655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16428-16655:1:exon

FJR48_RS11995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS11995
old locus tag: FJR48_11995
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008335534.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MESQTNLEKLNVRVSEILQQYHSLKSENEMLRSELVSLKAEQELKDQEIEKLVQQNVEKDMEIDEIANKIESILG
SIO_010081: FJR48_RS11995
subclass of: SO_0000673
so part of: FJR48_RS11995
location: 16428..16655
location: region:16428-16655:1
so has part: feature:16428-16655:1:exon

WP_152307895.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16428-16655:1:exon

FJR48_RS12000
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS12000
old locus tag: FJR48_12000
so part of: sequence
location: 16655..16879
location: region:16655-16879:1
so has part: feature:16655-16879:1:exon
subclass of: SO_0000010

position:16879:1
position: 16879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16655-16879:1:exon

FJR48_RS12000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS12000
old locus tag: FJR48_12000
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008335827.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSQKIALHIGGRRFDVDVDDDFADFLTKQIAKDFNADGNNDIKVLLQAYIRKNYDLYIQDNKMKEMIQECDNLY
SIO_010081: FJR48_RS12000
subclass of: SO_0000673
so part of: FJR48_RS12000
location: 16655..16879
location: region:16655-16879:1
so has part: feature:16655-16879:1:exon

WP_152307894.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16655-16879:1:exon

FJR48_RS12005
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS12005
old locus tag: FJR48_12005
so part of: sequence
location: 16923..16999
location: region:16923-16999:1
so has part: feature:16923-16999:1:exon
subclass of: SO_0000663

position:16923:1
position: 16923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16999:1
position: 16999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16923-16999:1:exon

FJR48_RS12005
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 2590022
locus tag: FJR48_RS12005
old locus tag: FJR48_12005
product: tRNA-Arg
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:16957..16959,aa:Arg,seq:gcg)
SIO_010081: FJR48_RS12005
subclass of: SO_0000673
so part of: FJR48_RS12005
location: 16923..16999
location: region:16923-16999:1
so has part: feature:16923-16999:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16923-16999:1:exon

FJR48_RS12010
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS12010
old locus tag: FJR48_12010
so part of: sequence
location: 17123..18190
location: region:17123-18190:1
so has part: feature:17123-18190:1:exon
subclass of: SO_0000010

position:17123:1
position: 17123
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18190:1
position: 18190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17123-18190:1:exon

FJR48_RS12010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS12010
old locus tag: FJR48_12010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013460636.1
GO function: GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: alkene reductase
translation: MNLFSKLELGKLTLKNRIIMAPMTRCRAVEDNCANDLMAEYYSQRASAGLIITEATQISKMGIGYLCTPGIYTNKQVEAWKKVTKAVHAKGSFIFLQLWHVGRVSHSSFLNGNLPVAPSAIKVEGEHFTPEGMQPFETPKELSTSEINEIVSDYANAAKNAIEAGFDGVEIHGANGYLIDQFIKDGSNKRNDEYGGAIENRARFLFEVVEAVTDAIGSEKTALRLSPSGTFNSMSDANPTEDFTYICSKLSKYNLAYLHVIDALEGDVRHGAKVVELKTLRDAYDGVFIVNGEYDKKRGNEVIQNKSADAVAYASLFLANPDLPKRFELDASLNTPEQSTFYTQDEKGYTDYKTL
SIO_010081: FJR48_RS12010
subclass of: SO_0000673
so part of: FJR48_RS12010
location: 17123..18190
location: region:17123-18190:1
so has part: feature:17123-18190:1:exon

WP_152307893.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17123-18190:1:exon

FJR48_RS12015
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS12015
old locus tag: FJR48_12015
pseudo: true
so part of: sequence
location: complement(18405..19471)
location: region:18405-19471:-1
so has part: feature:18405-19471:-1:exon
subclass of: SO_0000010

position:18405:-1
position: 18405
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19471:-1
position: 19471
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18405-19471:-1:exon

FJR48_RS12015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS12015
old locus tag: FJR48_12015
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013460636.1
GO function: GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: alkene reductase
SIO_010081: FJR48_RS12015
subclass of: SO_0000673
so part of: FJR48_RS12015
location: complement(18405..19471)
location: region:18405-19471:-1
so has part: feature:18405-19471:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18405-19471:-1:exon

FJR48_RS12020
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS12020
old locus tag: FJR48_12020
so part of: sequence
location: complement(19595..19671)
location: region:19595-19671:-1
so has part: feature:19595-19671:-1:exon
subclass of: SO_0000663

position:19595:-1
position: 19595
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19671:-1
position: 19671
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19595-19671:-1:exon

FJR48_RS12020
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 2590022
locus tag: FJR48_RS12020
old locus tag: FJR48_12020
product: tRNA-Arg
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(19635..19637),aa:Arg,seq:gcg)
SIO_010081: FJR48_RS12020
subclass of: SO_0000673
so part of: FJR48_RS12020
location: complement(19595..19671)
location: region:19595-19671:-1
so has part: feature:19595-19671:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:19595-19671:-1:exon

FJR48_RS12500
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS12500
so part of: sequence
location: complement(19813..19938)
location: region:19813-19938:-1
so has part: feature:19813-19938:-1:exon
subclass of: SO_0000010

position:19813:-1
position: 19813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19938:-1
position: 19938
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19813-19938:-1:exon

FJR48_RS12500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS12500
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSQKIALHIGGRRFDVDVDDDFADFLTKQIAKDLTQTEIMT
SIO_010081: FJR48_RS12500
subclass of: SO_0000673
so part of: FJR48_RS12500
location: complement(19813..19938)
location: region:19813-19938:-1
so has part: feature:19813-19938:-1:exon

WP_277872390.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19813-19938:-1:exon

FJR48_RS12030
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS12030
old locus tag: FJR48_12030
so part of: sequence
location: complement(19938..20165)
location: region:19938-20165:-1
so has part: feature:19938-20165:-1:exon
subclass of: SO_0000010

position:20165:-1
position: 20165
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19938-20165:-1:exon

FJR48_RS12030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS12030
old locus tag: FJR48_12030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008335534.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MESQTNLEKLNVRVSEILQQYHSLKSENEMLRSELVSLKAEQELKDQEIEKLVQQNVEKDMEIDEIANKIESILG
SIO_010081: FJR48_RS12030
subclass of: SO_0000673
so part of: FJR48_RS12030
location: complement(19938..20165)
location: region:19938-20165:-1
so has part: feature:19938-20165:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:19938-20165:-1:exon

FJR48_RS12040
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS12040
old locus tag: FJR48_12040
so part of: sequence
location: complement(20573..21004)
location: region:20573-21004:-1
so has part: feature:20573-21004:-1:exon
subclass of: SO_0000010

position:20573:-1
position: 20573
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21004:-1
position: 21004
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20573-21004:-1:exon

FJR48_RS12040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS12040
old locus tag: FJR48_12040
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008244284.1
GO function: GO:0020037 - heme binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: globin domain-containing protein
translation: MKLSQKTIDTVKRIANPVSVNAESIAKRMYEILFEKHPEMEKLFDEAGANHHKKLALAVIAFVDYIDDLDVLENTLEKIAVEHVKKNIKPEHYPLIEKSILKAIKDVLGDVATNEVIDAWREAFSFLSQVLIEKEKKYKAWYL
SIO_010081: FJR48_RS12040
subclass of: SO_0000673
so part of: FJR48_RS12040
location: complement(20573..21004)
location: region:20573-21004:-1
so has part: feature:20573-21004:-1:exon

WP_152308461.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20573-21004:-1:exon

FJR48_RS12045
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS12045
old locus tag: FJR48_12045
so part of: sequence
location: 21168..22424
location: region:21168-22424:1
so has part: feature:21168-22424:1:exon
subclass of: SO_0000010

position:21168:1
position: 21168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22424:1
position: 22424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21168-22424:1:exon

FJR48_RS12045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS12045
old locus tag: FJR48_12045
inference: COORDINATES: protein motif:HMM:TIGR03605.1
GO function: GO:0016491 - oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SagB family peptide dehydrogenase
translation: MPIFHQQTKHSYMSVRKNSHFLDWLSQPKNHKIYPHFNQRFKIENYDELKNLNLIGGITFEKKYPNGVYHLRSVPSAGGLYPCEVYIQIRGIKGLLDGIYHYEPYSESLTLLQEIDEDGVEYYFKNKKQEKGLVFLISSVYFRSSWKYRDRSIRYILLDSGHQLGSIYAALSVMQRDNEVIFDFDKLSLNSVFGFRNDEMFTCAIKSSFAQDKDVSKLRQSLPFVSGCDYLETNSFIEDAYKQTANYEDVTANMPDFFENIPKEQLKMAILNRRSIRAFRQYSMKRDEFEFIMKYICSFANKNNIDIFYTLHLVENMECGLYKNDELIKKGDFRSKSRYLALEQNLGGQSGVTFFFTSNEVKKYHKVNILSGFLAQIIYIKSDLQGIGCSGIGAYYDDETKEFLETKNNILYMLAIGR
SIO_010081: FJR48_RS12045
subclass of: SO_0000673
so part of: FJR48_RS12045
location: 21168..22424
location: region:21168-22424:1
so has part: feature:21168-22424:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:21168-22424:1:exon

FJR48_RS12050
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
gene: uvrB
locus tag: FJR48_RS12050
old locus tag: FJR48_12050
so part of: sequence
location: 22454..24436
location: region:22454-24436:1
so has part: feature:22454-24436:1:exon
subclass of: SO_0000010

position:22454:1
position: 22454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24436:1
position: 24436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22454-24436:1:exon

FJR48_RS12050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
gene: uvrB
locus tag: FJR48_RS12050
old locus tag: FJR48_12050
EC number: 3.1.25.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013326356.1
GO component: GO:0009380 - excinuclease repair complex [Evidence IEA]
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO process: GO:0006289 - nucleotide-excision repair [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: excinuclease ABC subunit UvrB
translation: MKKEALFKVESPYQPAGDQPQAIEKLSKSILDGNRYQTLEGVTGSGKTHTMARVIEKVQRPTIIMTHNKTLAAQLYSEFRQFFPHNHVEYFVSYYDYYQPEAYIPRQDLFIEKDSAINDELERMRLSSTANLLSYDDVIVVASVSANYGLGDPEEYENMVQALEVGDEIEQKKLLLRLVEMGYTRNDSYFDSGHIRVNGESLDVYPPYFEQEAIRIEFFGDEIEAIYTFDIIDNKKLEEHKSFTIYATSQFSVRAEKMAIAIKRIEEELDERLDYFQKENKLVEYQRLKQRVEFDLEMLETTGSCKGVENYSRLLTNKKPGEAPYTLLDYFELHHKDYLVIVDESHVSLPQYRGMYAGDRARKEVLVEYGFRLPSALDNRPLKIDEYINKAPHYLFVSATPAEQELELSAVKAEQIIRPTGLLDPVIEVKSSDNQVEDIHDEIKKVTAKNERVLITVLTKKMAEALTKYLADLGIKVQYMHSDIDTIERNQIIRSLRLGEFDVLIGINLLREGLDLPEVSLVGILDADKEGFLRSETALIQTIGRGARNANGRVILYANKITGSMQRAMGTTKHRREIQDAFNKEHGITPKTTIRALDESLKLEDHGGIYQKNKKLDKMPASERKAIIKELSLKMKDAAKNLEFEEAARLRDEIAKIKKL
SIO_010081: FJR48_RS12050
subclass of: SO_0000673
so part of: FJR48_RS12050
location: 22454..24436
location: region:22454-24436:1
so has part: feature:22454-24436:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:22454-24436:1:exon

FJR48_RS12055
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS12055
old locus tag: FJR48_12055
so part of: sequence
location: 24446..25015
location: region:24446-25015:1
so has part: feature:24446-25015:1:exon
subclass of: SO_0000010

position:24446:1
position: 24446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25015:1
position: 25015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24446-25015:1:exon

FJR48_RS12055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS12055
old locus tag: FJR48_12055
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013461078.1
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DedA family protein
translation: MEDTFSNLATYGYIGLFLYSLGGGFVALLGAGVLSYMGKMDLTTSLFIAFIANALGDVMLFYMARYQKSMMMDGLRKHRRKLALSHALMKKYGSWIILFQKFVYGIKTLIPIAIGLTKYDFKKFAILNFFSAGVWALVVGLGAYYSGAPLIKLAELIGEKPWIAPLLLVTFGGLLWLYMEKATKKKVKK
SIO_010081: FJR48_RS12055
subclass of: SO_0000673
so part of: FJR48_RS12055
location: 24446..25015
location: region:24446-25015:1
so has part: feature:24446-25015:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:24446-25015:1:exon

FJR48_RS12060
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
gene: pckA
locus tag: FJR48_RS12060
old locus tag: FJR48_12060
so part of: sequence
location: complement(25066..26646)
location: region:25066-26646:-1
so has part: feature:25066-26646:-1:exon
subclass of: SO_0000010

position:25066:-1
position: 25066
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26646:-1
position: 26646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25066-26646:-1:exon

FJR48_RS12060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
gene: pckA
locus tag: FJR48_RS12060
old locus tag: FJR48_12060
EC number: 4.1.1.49
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008336972.1
GO function: GO:0004612 - phosphoenolpyruvate carboxykinase (ATP) activity [Evidence IEA]
GO process: GO:0006094 - gluconeogenesis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phosphoenolpyruvate carboxykinase (ATP)
translation: MNVAELENIGLKNVGEVFHNLSYDELIEHEVNNKECAVTKKGATAVDTGIFTGRSPKDKYFVERDPSNKYIAWGDVNQKVSAEIFDELLEVAQKQLSGKNLYVTDVFCGSSAASKRSVRFISEIAWQSHFVKNMFIRPSSAELEVFKEDFVVLNACKAVNEKWEEHGMNSEVFVLFDVERNMAIIGGTWYGGEMKKGIFSMMNYWLPLEGKLPMHCSANVGAEGDTALFFGLSGTGKTTLSTDPKRALIGDDEHGWDNHGVFNFEGGCYAKVINLDEKSEPEIYGAIKTNALLENVVMYGEGEVDYEDSTKTENTRVSYPIEHIVNHKPDLMAGHPQNIIFLTADAFGVLPPVSKLTRDQAMYYFLSGYTAKVAGTERGITEPVATFSACFGEAFLPLHPTVYAKLLGEKIDKHNVNVYLVNTGWTGGKYGVGHRMSIKDTRACINAILDGSINESEFDTTKTFRLQVPKTLGDINPDILNPRNAWADKDEFDRTRDELAEMFVENYKRYKDGNEDYSPYGPIIGS
SIO_010081: FJR48_RS12060
subclass of: SO_0000673
so part of: FJR48_RS12060
location: complement(25066..26646)
location: region:25066-26646:-1
so has part: feature:25066-26646:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:25066-26646:-1:exon

FJR48_RS12065
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS12065
old locus tag: FJR48_12065
so part of: sequence
location: 26772..26846
location: region:26772-26846:1
so has part: feature:26772-26846:1:exon
subclass of: SO_0000663

position:26772:1
position: 26772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26846:1
position: 26846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26772-26846:1:exon

FJR48_RS12065
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 2590022
locus tag: FJR48_RS12065
old locus tag: FJR48_12065
product: tRNA-Val
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:26804..26806,aa:Val,seq:gac)
SIO_010081: FJR48_RS12065
subclass of: SO_0000673
so part of: FJR48_RS12065
location: 26772..26846
location: region:26772-26846:1
so has part: feature:26772-26846:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:26772-26846:1:exon

FJR48_RS12070
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS12070
old locus tag: FJR48_12070
so part of: sequence
location: complement(26858..27445)
location: region:26858-27445:-1
so has part: feature:26858-27445:-1:exon
subclass of: SO_0000010

position:26858:-1
position: 26858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27445:-1
position: 27445
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26858-27445:-1:exon

FJR48_RS12070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS12070
old locus tag: FJR48_12070
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: outer membrane beta-barrel protein
translation: MTDRLKKLLVAVLFAASASYAGSNDYTYDSSSLVAIEGGFTSMEVKNPSNLVTKDDFGTVGLKIGAQTRNVRMFVSFRNGFIDDDNYNYDYFYMYGAELQYLFNFSTSANFFIGASAGRISLRFDDATLNQRDYATNYTGGDLGFNIHMNENFDFELGARFINLLDSEHTLSGVKYTFDDITMGYMSIIFKYQMD
SIO_010081: FJR48_RS12070
subclass of: SO_0000673
so part of: FJR48_RS12070
location: complement(26858..27445)
location: region:26858-27445:-1
so has part: feature:26858-27445:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:26858-27445:-1:exon

FJR48_RS12075
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS12075
old locus tag: FJR48_12075
so part of: sequence
location: complement(27491..28639)
location: region:27491-28639:-1
so has part: feature:27491-28639:-1:exon
subclass of: SO_0000010

position:27491:-1
position: 27491
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28639:-1
position: 28639
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27491-28639:-1:exon

FJR48_RS12075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS12075
old locus tag: FJR48_12075
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008335028.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aminoacetone oxidase family FAD-binding enzyme
translation: MKIYDIVILGGGASSLMCAAHLNKSLNVAIIDANDKLAKKLKISGGGKCNITNKYVDVRNFDGDADLVKSVLERFDRDDMLQFLSNNKIELELRKNRYYFCKKSSDDIINVLKKKSSFAKVHLNTKVLDVKKSDEIFEINTDKGVFKTNSLVVATGGESFKNIGASDIGLQIAKSFDIEVKNFTPALAGLTVQKEQFWMKELSGLSCYVNIKVNDRVIKEEMLFAHKGISGPAVLSASLYWRKGDISIDFLPNENIPDLIKGSKKLISSVIPLPKRLSKALLEAIYVKDTECKKVDAKTKEKLLRLHNYSFAPAGNFGFSKAEVSKGGIISNELNFVTFESKKVKKLYFIGEVVDVTGELGGYNFQWAFGSGMICAKNINYN
SIO_010081: FJR48_RS12075
subclass of: SO_0000673
so part of: FJR48_RS12075
location: complement(27491..28639)
location: region:27491-28639:-1
so has part: feature:27491-28639:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:27491-28639:-1:exon

FJR48_RS12080
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
gene: rimO
locus tag: FJR48_RS12080
old locus tag: FJR48_12080
so part of: sequence
location: 28684..30006
location: region:28684-30006:1
so has part: feature:28684-30006:1:exon
subclass of: SO_0000010

position:28684:1
position: 28684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30006:1
position: 30006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28684-30006:1:exon

FJR48_RS12080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
gene: rimO
locus tag: FJR48_RS12080
old locus tag: FJR48_12080
EC number: 2.8.4.4
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008336270.1
GO function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0008172 - S-methyltransferase activity [Evidence IEA]; GO:0016782 - transferase activity, transferring sulphur-containing groups [Evidence IEA]
GO process: GO:0018339 - peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 30S ribosomal protein S12 methylthiotransferase RimO
translation: MGNKLHVVSLGCNKNLVDTEVMMGRLKNFSLTDDNADADVIIVNTCGFIDAAKEESVNTILNLHDARKEDSILVVAGCLSERYREELAEEMPEVDIFTGVGDYERIDELLAAKESRFSDEVYLIDGAERVVTGSTYHAYIKLSEGCNQACSFCAIPSFKGKLNSRSLDSIAKEVESLVKQGYYDFSFISQDSSSYLRDQNIQDGLSLLIQRIELIEGVKSARILYLYPSTTTIKLLQNIGRSKIFHNYFDMPIQHINDDMLRIMKRGFGKDKTIELLDYMKSLPNSFIRTSFIVGHPGETSEMFEEMKEFAENFGFDRINIFEYSDEETTFAYDMKDKKIDKEIIHDRAEILAEVKAEVLQKSLMAEIGKEVELVIDGESDEHEFLLSAKELIWAPDIDGEIYVNDRTDDEAELEFGKVYKAKITSVVGDILTATVDNSK
SIO_010081: FJR48_RS12080
subclass of: SO_0000673
so part of: FJR48_RS12080
location: 28684..30006
location: region:28684-30006:1
so has part: feature:28684-30006:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:28684-30006:1:exon

FJR48_RS12385
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
gene: tilS
locus tag: FJR48_RS12385
so part of: sequence
location: 30015..30638
location: region:30015-30638:1
so has part: feature:30015-30638:1:exon
subclass of: SO_0000010

position:30015:1
position: 30015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30638:1
position: 30638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30015-30638:1:exon

FJR48_RS12385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
gene: tilS
locus tag: FJR48_RS12385
EC number: 6.3.4.19
inference: COORDINATES: protein motif:HMM:TIGR02432.1
GO function: GO:0016879 - ligase activity, forming carbon-nitrogen bonds [Evidence IEA]
GO process: GO:0006400 - tRNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tRNA lysidine(34) synthetase TilS
translation: MLKSDVLEHLKSSKNLLAFSAGVDSSALLCLLLDANIKFDIAIVDYGLRVQSKDEVAYAKELADKYNIKCFIHKAEKIDTNFEASARKIRYDFFESLIQDNGYDNLLTAHHLGDRFEWMLMQFCKGAGCAELSGMKSVQNKKNYKLIRPLLHLDKSELLEYLKNNKIKYFEDKSNFDESYTRNSFRHGYTNPLISEHLDGIKKVLNI
SIO_010081: FJR48_RS12385
subclass of: SO_0000673
so part of: FJR48_RS12385
location: 30015..30638
location: region:30015-30638:1
so has part: feature:30015-30638:1:exon

WP_241856215.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30015-30638:1:exon

FJR48_RS12390
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS12390
so part of: sequence
location: 30770..31003
location: region:30770-31003:1
so has part: feature:30770-31003:1:exon
subclass of: SO_0000010

position:30770:1
position: 30770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31003:1
position: 31003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30770-31003:1:exon

FJR48_RS12390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS12390
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLSANERELLKTNNTLVVGRKFVVNFHKEYIFIAPYIDKDTKMSKEFKERMRKLKIEPKLRAYFYNHLEVFESLELE
SIO_010081: FJR48_RS12390
subclass of: SO_0000673
so part of: FJR48_RS12390
location: 30770..31003
location: region:30770-31003:1
so has part: feature:30770-31003:1:exon

WP_241856217.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30770-31003:1:exon

FJR48_RS12090
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS12090
old locus tag: FJR48_12090
so part of: sequence
location: complement(30967..31374)
location: region:30967-31374:-1
so has part: feature:30967-31374:-1:exon
subclass of: SO_0000010

position:30967:-1
position: 30967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31374:-1
position: 31374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30967-31374:-1:exon

FJR48_RS12090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS12090
old locus tag: FJR48_12090
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVKSTGDLKRYQDFEAQTFEELKILQADNRHIITAFDTVFDQDRFIKKYKALFNTLELTKAQNLEKEDGFSVYNVKTSSKISSPATFYKFLDEVNKSDWIVAVNFPIDFKREGEVINSSFQMKVYSNSKDSNTSK
SIO_010081: FJR48_RS12090
subclass of: SO_0000673
so part of: FJR48_RS12090
location: complement(30967..31374)
location: region:30967-31374:-1
so has part: feature:30967-31374:-1:exon

WP_241856219.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30967-31374:-1:exon

FJR48_RS12095
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS12095
old locus tag: FJR48_12095
so part of: sequence
location: complement(31497..32051)
location: region:31497-32051:-1
so has part: feature:31497-32051:-1:exon
subclass of: SO_0000010

position:31497:-1
position: 31497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32051:-1
position: 32051
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31497-32051:-1:exon

FJR48_RS12095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS12095
old locus tag: FJR48_12095
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013326350.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRYSYIKPRKKSLLTAEMKLLFAFFSISLFMLLGTYIFLLYKDMKFLEDKQNIAMEKTNLQKNIKDMESKIAYIEQQNITSAKIFTQNSVLKDSIKNLFDLVPQRITLSQAKLLKNGLVLYGITPNKDVYNFMLHAPLRSIFHETYSSFYPTEGGWLRFVSTNYMNEDELSESSVESDSEKKDE
SIO_010081: FJR48_RS12095
subclass of: SO_0000673
so part of: FJR48_RS12095
location: complement(31497..32051)
location: region:31497-32051:-1
so has part: feature:31497-32051:-1:exon

WP_152307906.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31497-32051:-1:exon

FJR48_RS12100
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS12100
old locus tag: FJR48_12100
so part of: sequence
location: complement(32048..33070)
location: region:32048-33070:-1
so has part: feature:32048-33070:-1:exon
subclass of: SO_0000010

position:32048:-1
position: 32048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:33070:-1
position: 33070
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32048-33070:-1:exon

FJR48_RS12100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS12100
old locus tag: FJR48_12100
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLSKFKTYLYNNIYINIVQSSKDTCIYVEEIDYKGLSNNYEEIFNTSNKSEIYEYIKTFISRSPINYVSILDPSLTQGAAPTCSHHEIKKYCTLEEFEQICVDDKWSYYTSKLDLLDIQGRYKKTGLDFIFSPFHMLHKFFADKTKGEISLFILVNEDYMALSVFESSKLLFASLLDMQKDDDSNDELIMDVDDDEELILDDIKNNSVDLEDIDVDDIEGLDEIDELDDLETFDDMDDFDASDEHEEHLSMSDKQMEDSVEQNSFGEDYHRFSLIQSAVNTFYKDSKFESKFIQSVYVADGIGLSNEFKKFLEEEMFLSVFIRKMDIAQELSELAKAEKK
SIO_010081: FJR48_RS12100
subclass of: SO_0000673
so part of: FJR48_RS12100
location: complement(32048..33070)
location: region:32048-33070:-1
so has part: feature:32048-33070:-1:exon

WP_152307907.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32048-33070:-1:exon

FJR48_RS12105
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS12105
old locus tag: FJR48_12105
so part of: sequence
location: complement(33060..33902)
location: region:33060-33902:-1
so has part: feature:33060-33902:-1:exon
subclass of: SO_0000010

position:33060:-1
position: 33060
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:33902:-1
position: 33902
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33060-33902:-1:exon

FJR48_RS12105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS12105
old locus tag: FJR48_12105
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008336171.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MKKLIDKKRKDFCEYLENIRGYSDLSIKTYNDAIREALSYIEILEENGEIIFDLMPFRLKISELNSKTISKKLSAIRSFSEYLNEKGMKIVLKSDSSVKVAKTLPKPISHKHIVEALSFADEQESLVVSLLYTLGLRISELEKLKLEDISEGWVRVLGKGSKQRDIPILKNIKDDIDSYIQNNNPKVFLFEKNDEALSQNSLRYIIAKVFKRINLKVSPHQLRHSYATELLNANAPIADVSELLGHSSMATTQIYTKLGSALKKQNYNNSHPLCGVNSAE
SIO_010081: FJR48_RS12105
subclass of: SO_0000673
so part of: FJR48_RS12105
location: complement(33060..33902)
location: region:33060-33902:-1
so has part: feature:33060-33902:-1:exon

WP_152307908.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33060-33902:-1:exon

FJR48_RS12110
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS12110
old locus tag: FJR48_12110
so part of: sequence
location: complement(33883..34338)
location: region:33883-34338:-1
so has part: feature:33883-34338:-1:exon
subclass of: SO_0000010

position:33883:-1
position: 33883
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:34338:-1
position: 34338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33883-34338:-1:exon

FJR48_RS12110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS12110
old locus tag: FJR48_12110
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008336601.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNTKLVIILFSLFTVLFMALYFYFNPSYQKSLQAKYYYEMGDYDEAYADAKEAFELDLYNRMAATIMAQSKTSLKYVNYIKDAKEYMKQIDEIVSKDDIKEADKAKIRLICEIMNSAYVKLAPSVITDKELVENAAYYHAGFEQLLEKVNR
SIO_010081: FJR48_RS12110
subclass of: SO_0000673
so part of: FJR48_RS12110
location: complement(33883..34338)
location: region:33883-34338:-1
so has part: feature:33883-34338:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:33883-34338:-1:exon

FJR48_RS12115
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS12115
old locus tag: FJR48_12115
so part of: sequence
location: complement(34328..34960)
location: region:34328-34960:-1
so has part: feature:34328-34960:-1:exon
subclass of: SO_0000010

position:34328:-1
position: 34328
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:34960:-1
position: 34960
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34328-34960:-1:exon

FJR48_RS12115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS12115
old locus tag: FJR48_12115
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008336925.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lysophospholipid acyltransferase family protein
translation: MKLLTKQQKRSLALLIIPFIGSLIIRFLYFTNKKKFHAPDTLTDESFIMACWHGELLMIPYAYLRYKEIPSVKLFISEHFDGELIAKTLGFFGFGTIRGSTTRGGAKALIQAIKEIKSGSDIGITPDGPKGPRHQVHDGIIAIAQKTKKKIVLVEIKPSKYWQLKSWDKFIVPKPFGELNYFISEPIDVSELEFEEARKLIKEGLLSHEH
SIO_010081: FJR48_RS12115
subclass of: SO_0000673
so part of: FJR48_RS12115
location: complement(34328..34960)
location: region:34328-34960:-1
so has part: feature:34328-34960:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:34328-34960:-1:exon

FJR48_RS12120
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
gene: miaB
locus tag: FJR48_RS12120
old locus tag: FJR48_12120
so part of: sequence
location: complement(34944..36245)
location: region:34944-36245:-1
so has part: feature:34944-36245:-1:exon
subclass of: SO_0000010

position:34944:-1
position: 34944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:36245:-1
position: 36245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34944-36245:-1:exon

FJR48_RS12120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
gene: miaB
locus tag: FJR48_RS12120
old locus tag: FJR48_12120
EC number: 2.8.4.3
inference: COORDINATES: similar to AA sequence:RefSeq:WP_041743339.1
GO function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0016782 - transferase activity, transferring sulphur-containing groups [Evidence IEA]
GO process: GO:0006400 - tRNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB
translation: MSKKVFIETLGCAMNERDTEHMLAELNEKENFSQTGDFKEADLILINTCSVREKPVSKLFSELGIFNKKKKENAKIGVCGCTASHLGKDIIKRAPYVDFVLGARNVSKITEVLHKPKAVEVDINYDESEFAFKDFRTSLYKAYINISIGCDKQCTYCIVPKTRGEEISIPLNLIVDEANRAVNSGAKEIFLLGQNVNNYGRRFSGKHDKVNFTNLLQELSKIEGLKRIRFTSPHPFHMDDEFIEEFAKNPKICKSMHMPLQSGSTKVLKDMKRGYSKEWFLNRVEKLRSMVPDVSISTDIIVAFPGESDEDFNDTIDVMDKVKFDQIFSFKYSARPETEAEHFTNVVNPEIASQRLTFLQDLYTKHLDEKMASKLGNIYEVYFEDLNADGYVSGRSDNNLVIKAKGSEELLGKFRKVKVTSIGRSILSGEIVN
SIO_010081: FJR48_RS12120
subclass of: SO_0000673
so part of: FJR48_RS12120
location: complement(34944..36245)
location: region:34944-36245:-1
so has part: feature:34944-36245:-1:exon

WP_152307909.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34944-36245:-1:exon

FJR48_RS12125
type: Gene
subclass of: SO_0000704
RO_0002162: 2590022
locus tag: FJR48_RS12125
old locus tag: FJR48_12125
so part of: sequence
location: complement(36257..36502)
location: region:36257-36502:-1
so has part: feature:36257-36502:-1:exon
subclass of: SO_0000010

position:36257:-1
position: 36257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:36502:-1
position: 36502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36257-36502:-1:exon

FJR48_RS12125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2590022
locus tag: FJR48_RS12125
old locus tag: FJR48_12125
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011373362.1
GO function: GO:0004518 - nuclease activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HP0268 family nuclease
translation: MDLKFARTELDAKPKKADIKKIEESVEKNGSVIFYFDRENSHKDLLELQDYFEEKGKGFYMNEVKFGLSDNEYMYQVHIID
SIO_010081: FJR48_RS12125
subclass of: SO_0000673
so part of: FJR48_RS12125
location: complement(36257..36502)
location: region:36257-36502:-1
so has part: feature:36257-36502:-1:exon

WP_152307910.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36257-36502:-1:exon