Pelagovum pacificum strain SM1903 plasmid p_SM1903_1, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Pelagovum.
The complete genome sequence of Pelagovum pacificum SM1903
Submitted (09-DEC-2020) State Key Laboratory of Microbial Technology, Shandong University, Binhai Road No.72, Qingdao 266237, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP065916.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: ABySS v. 2.2.0; GapCloser v. 1.12\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 910.0x\nSequencing Technology :: Illumina NovaSeq; Oxford Nanopore\n PromethION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 01/01/2023 03:18:36\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,031\nCDSs (total) :: 3,975\nGenes (coding) :: 3,958\nCDSs (with protein) :: 3,958\nGenes (RNA) :: 56\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 4\nPseudo Genes (total) :: 17\nCDSs (without protein) :: 17\nPseudo Genes (ambiguous residues) :: 0 of 17\nPseudo Genes (frameshifted) :: 2 of 17\nPseudo Genes (incomplete) :: 16 of 17\nPseudo Genes (internal stop) :: 2 of 17\nPseudo Genes (multiple problems) :: 2 of 17\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
nucleoside-diphosphate sugar epimerase/dehydratase
COORDINATES: similar to AA sequence:RefSeq:WP_007426509.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015497024.1
UDP-glucose/GDP-mannose dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007257272.1
GO:0015159 - polysaccharide transmembrane transporter activity [Evidence IEA]
GO:0015774 - polysaccharide transport [Evidence IEA]
polysaccharide biosynthesis/export family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007257273.1
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008195004.1
COORDINATES: protein motif:HMM:NF015338.2
endonuclease/exonuclease/phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015496274.1
GO:0008915 - lipid-A-disaccharide synthase activity [Evidence IEA]
GO:0009245 - lipid A biosynthetic process [Evidence IEA]
lipid-A-disaccharide synthase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009572911.1
COORDINATES: protein motif:HMM:NF013652.2
COORDINATES: similar to AA sequence:RefSeq:WP_013479592.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0004604 - phosphoadenylyl-sulfate reductase (thioredoxin) activity [Evidence IEA]
GO:0019379 - sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019294673.1
COORDINATES: protein motif:HMM:NF022436.2
COORDINATES: protein motif:HMM:NF024880.2
methyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF012722.2
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_012642362.1
COORDINATES: similar to AA sequence:RefSeq:WP_007257299.1
COORDINATES: similar to AA sequence:RefSeq:WP_011910848.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018001157.1
COORDINATES: similar to AA sequence:RefSeq:WP_007257311.1
COORDINATES: similar to AA sequence:RefSeq:WP_008886365.1
COORDINATES: protein motif:HMM:NF012573.2
COORDINATES: similar to AA sequence:RefSeq:WP_009506812.1
COORDINATES: protein motif:HMM:NF012415.2