Vibrio aquimaris strain THAF100 plasmid pTHAF100_c, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.
Complete genome sequence of Vibrio sp. strain THAF100, isolated from non-filtered water from the water column of tank 6 of a marine aquarium containing stony-coral fragments. Water maintained at 26 degree C
Submitted (08-OCT-2019) CeBiTec, Uni Bielefeld, Sequenz 1, Bielefeld 33615, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP045353.1.\nAnnotated using prokka v1.11 from http://www.vicbioinformatics.com.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.6\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 121.9x\nSequencing Technology :: Illumina MiSeq, Oxford Nanopore GridION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/06/2023 02:41:20\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,126\nCDSs (total) :: 3,989\nGenes (coding) :: 3,908\nCDSs (with protein) :: 3,908\nGenes (RNA) :: 137\nrRNAs :: 10, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 10, 9, 9 (5S, 16S, 23S)\ntRNAs :: 105\nncRNAs :: 4\nPseudo Genes (total) :: 81\nCDSs (without protein) :: 81\nPseudo Genes (ambiguous residues) :: 0 of 81\nPseudo Genes (frameshifted) :: 23 of 81\nPseudo Genes (incomplete) :: 59 of 81\nPseudo Genes (internal stop) :: 21 of 81\nPseudo Genes (multiple problems) :: 19 of 81\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Non-filtered water from the water column of tank 6 of a marine aquarium containing stony-coral fragments. Water maintained at 26 degree C
Germany: Animal Facility, Justus-Liebig-University, Giessen
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011958749.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017716966.1
helix-turn-helix transcriptional regulator