Vibrio aquimaris strain THAF100 plasmid pTHAF100_b, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.
Complete genome sequence of Vibrio sp. strain THAF100, isolated from non-filtered water from the water column of tank 6 of a marine aquarium containing stony-coral fragments. Water maintained at 26 degree C
Submitted (08-OCT-2019) CeBiTec, Uni Bielefeld, Sequenz 1, Bielefeld 33615, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP045352.1.\nAnnotated using prokka v1.11 from http://www.vicbioinformatics.com.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.6\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 121.9x\nSequencing Technology :: Illumina MiSeq, Oxford Nanopore GridION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/06/2023 02:41:20\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,126\nCDSs (total) :: 3,989\nGenes (coding) :: 3,908\nCDSs (with protein) :: 3,908\nGenes (RNA) :: 137\nrRNAs :: 10, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 10, 9, 9 (5S, 16S, 23S)\ntRNAs :: 105\nncRNAs :: 4\nPseudo Genes (total) :: 81\nCDSs (without protein) :: 81\nPseudo Genes (ambiguous residues) :: 0 of 81\nPseudo Genes (frameshifted) :: 23 of 81\nPseudo Genes (incomplete) :: 59 of 81\nPseudo Genes (internal stop) :: 21 of 81\nPseudo Genes (multiple problems) :: 19 of 81\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Non-filtered water from the water column of tank 6 of a marine aquarium containing stony-coral fragments. Water maintained at 26 degree C
Germany: Animal Facility, Justus-Liebig-University, Giessen
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006714010.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016846.2
COORDINATES: protein motif:HMM:TIGR01760.1
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0016032 - viral process [Evidence IEA]
COORDINATES: protein motif:HMM:NF018674.2
COORDINATES: similar to AA sequence:RefSeq:WP_006231412.1
COORDINATES: similar to AA sequence:RefSeq:WP_016793842.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017051026.1
COORDINATES: similar to AA sequence:RefSeq:WP_017110299.1
COORDINATES: similar to AA sequence:RefSeq:WP_000582315.1
COORDINATES: similar to AA sequence:RefSeq:WP_001036996.1
COORDINATES: protein motif:HMM:NF024252.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF012920.2
COORDINATES: protein motif:HMM:NF017673.2
phage terminase large subunit family protein
COORDINATES: protein motif:HMM:TIGR01539.1
GO:0044423 - virion component [Evidence IEA]
GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF012783.2
GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021473.2
COORDINATES: protein motif:HMM:TIGR01644.1
COORDINATES: protein motif:HMM:NF016736.2
COORDINATES: protein motif:HMM:NF021220.2