Cellulosimicrobium protaetiae strain BI34 plasmid pCPRO01, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Promicromonosporaceae; Cellulosimicrobium.
Cellulosimicrobium protaetiae sp. nov., isolated from the gut of the larva of Protaetia brevitarsis seulensis
Submitted (17-APR-2020) Korean Collection for Type Cultures (KCTC), Korea Research Institute of Bioscience & Biotechnology (KRIBB), 181 Ipsin-gil, Jeongeup-si, Jeollabuk-do 56212, Korea, Republic of
Submitted (06-NOV-2019) Korean Collection for Type Cultures (KCTC), Korea Research Institute of Bioscience & Biotechnology (KRIBB), 181 Ipsin-gil, Jeongeup-si, Jeollabuk-do 56212, Republic of Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP052758.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: JUL-2019\nAssembly Method :: HGAP v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 178.0x\nSequencing Technology :: PacBio RSII; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 15:24:25\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,153\nCDSs (total) :: 4,090\nGenes (coding) :: 4,070\nCDSs (with protein) :: 4,070\nGenes (RNA) :: 63\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 3\nPseudo Genes (total) :: 20\nCDSs (without protein) :: 20\nPseudo Genes (ambiguous residues) :: 0 of 20\nPseudo Genes (frameshifted) :: 3 of 20\nPseudo Genes (incomplete) :: 17 of 20\nPseudo Genes (internal stop) :: 1 of 20\nPseudo Genes (multiple problems) :: 1 of 20\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Cellulosimicrobium protaetiae
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012880223.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012880222.1
COORDINATES: similar to AA sequence:RefSeq:WP_012880221.1
COORDINATES: similar to AA sequence:RefSeq:WP_012880220.1
COORDINATES: similar to AA sequence:RefSeq:WP_012880219.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014566.2
CPBP family intramembrane metalloprotease
COORDINATES: similar to AA sequence:RefSeq:WP_005268119.1
COORDINATES: similar to AA sequence:RefSeq:WP_013133640.1
COORDINATES: similar to AA sequence:RefSeq:WP_019663840.1
COORDINATES: protein motif:HMM:NF016362.2
COORDINATES: protein motif:HMM:NF039693.1
COORDINATES: similar to AA sequence:RefSeq:WP_013838566.1
COORDINATES: protein motif:HMM:NF024359.2
COORDINATES: similar to AA sequence:RefSeq:WP_009152724.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012866036.1
GO:0097573 - glutathione oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012880189.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611786.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012880187.1
COORDINATES: similar to AA sequence:RefSeq:WP_012880186.1
COORDINATES: similar to AA sequence:RefSeq:WP_012865429.1
COORDINATES: similar to AA sequence:RefSeq:WP_012865428.1
COORDINATES: similar to AA sequence:RefSeq:WP_014923258.1
COORDINATES: similar to AA sequence:RefSeq:WP_005474661.1
COORDINATES: similar to AA sequence:RefSeq:WP_012919463.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018172384.1
GO:0015926 - glucosidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012998662.1
COORDINATES: similar to AA sequence:RefSeq:WP_017559543.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
glycoside hydrolase family 3 N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017538238.1
COORDINATES: similar to AA sequence:RefSeq:WP_020545980.1
COORDINATES: similar to AA sequence:RefSeq:WP_017538236.1
COORDINATES: similar to AA sequence:RefSeq:WP_015786663.1
COORDINATES: protein motif:HMM:NF024777.2
LamG-like jellyroll fold domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013734615.1
COORDINATES: similar to AA sequence:RefSeq:WP_018173050.1
COORDINATES: protein motif:HMM:NF016497.2
COORDINATES: protein motif:HMM:NF012669.2
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018853020.1
right-handed parallel beta-helix repeat-containing protein
COORDINATES: protein motif:HMM:TIGR02937.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF025120.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF022388.2
COORDINATES: protein motif:HMM:NF039499.1
COORDINATES: similar to AA sequence:RefSeq:WP_012880181.1
peptidoglycan DD-metalloendopeptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012880178.1
COORDINATES: similar to AA sequence:RefSeq:WP_012880177.1
COORDINATES: similar to AA sequence:RefSeq:WP_012880176.1
COORDINATES: similar to AA sequence:RefSeq:WP_012880175.1
COORDINATES: similar to AA sequence:RefSeq:WP_012880174.1
COORDINATES: similar to AA sequence:RefSeq:WP_012880173.1
COORDINATES: protein motif:HMM:NF037404.2
COORDINATES: similar to AA sequence:RefSeq:WP_018009323.1
COORDINATES: similar to AA sequence:RefSeq:WP_016461321.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006947849.1
COORDINATES: similar to AA sequence:RefSeq:WP_011266083.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010081722.1
COORDINATES: similar to AA sequence:RefSeq:WP_017487795.1
COORDINATES: protein motif:HMM:NF024589.2
COORDINATES: protein motif:HMM:NF040570.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012880167.1
COORDINATES: similar to AA sequence:RefSeq:WP_012880165.1
LysM peptidoglycan-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008359823.1
COORDINATES: similar to AA sequence:RefSeq:WP_012880163.1
TadE/TadG family type IV pilus assembly protein
COORDINATES: similar to AA sequence:RefSeq:WP_012880162.1
COORDINATES: similar to AA sequence:RefSeq:WP_011755675.1
COORDINATES: similar to AA sequence:RefSeq:WP_012880160.1
COORDINATES: similar to AA sequence:RefSeq:WP_009774470.1
type II secretion system F family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012880158.1
COORDINATES: similar to AA sequence:RefSeq:WP_012880157.1
COORDINATES: similar to AA sequence:RefSeq:WP_012880156.1
COORDINATES: protein motif:HMM:NF025001.2
COORDINATES: similar to AA sequence:RefSeq:WP_012880150.1
COORDINATES: similar to AA sequence:RefSeq:WP_012880149.1
COORDINATES: similar to AA sequence:RefSeq:WP_012880148.1
COORDINATES: similar to AA sequence:RefSeq:WP_012880145.1
COORDINATES: similar to AA sequence:RefSeq:WP_012880143.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749220.1
COORDINATES: protein motif:HMM:NF014520.2
COORDINATES: similar to AA sequence:RefSeq:WP_012880138.1
COORDINATES: similar to AA sequence:RefSeq:WP_018565463.1
COORDINATES: similar to AA sequence:RefSeq:WP_012880137.1
COORDINATES: similar to AA sequence:RefSeq:WP_012880136.1
COORDINATES: similar to AA sequence:RefSeq:WP_003941562.1
COORDINATES: similar to AA sequence:RefSeq:WP_012880134.1
COORDINATES: similar to AA sequence:RefSeq:WP_007299570.1
COORDINATES: similar to AA sequence:RefSeq:WP_003941564.1
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012946898.1
helix-turn-helix domain containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011562790.1
COORDINATES: similar to AA sequence:RefSeq:WP_012880131.1
COORDINATES: similar to AA sequence:RefSeq:WP_012880129.1
COORDINATES: similar to AA sequence:RefSeq:WP_012880123.1
COORDINATES: similar to AA sequence:RefSeq:WP_012880122.1