Klebsiella pasteurii strain Sb-24 plasmid pkle02, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
Klebsiella isolated from antimony mine confer antibiotic resistance
Submitted (15-APR-2021) College of Resources and Environment, Fujian Agriculture and Forestry University, Shang Xia Dian Road, Fuzhou 350007, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP073237.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 1.5\nGenome Representation :: Full\nExpected Final Version :: Yes\nReference-guided Assembly :: klebsiella\nGenome Coverage :: 313.0x\nSequencing Technology :: Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 06:29:55\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,554\nCDSs (total) :: 5,436\nGenes (coding) :: 5,331\nCDSs (with protein) :: 5,331\nGenes (RNA) :: 118\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 84\nncRNAs :: 9\nPseudo Genes (total) :: 105\nCDSs (without protein) :: 105\nPseudo Genes (ambiguous residues) :: 0 of 105\nPseudo Genes (frameshifted) :: 41 of 105\nPseudo Genes (incomplete) :: 69 of 105\nPseudo Genes (internal stop) :: 21 of 105\nPseudo Genes (multiple problems) :: 24 of 105\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
originally submitted as Klebsiella michiganensis
COORDINATES: similar to AA sequence:RefSeq:WP_004213599.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:NP_462552.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF010277.0
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:NP_052660.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229738.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229737.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229736.1
COORDINATES: similar to AA sequence:RefSeq:WP_000547968.1
COORDINATES: similar to AA sequence:RefSeq:WP_009651959.1
COORDINATES: similar to AA sequence:RefSeq:WP_004152379.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:YP_005229685.1
COORDINATES: similar to AA sequence:RefSeq:WP_004153014.1
COORDINATES: similar to AA sequence:RefSeq:WP_004098855.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229681.1
COORDINATES: similar to AA sequence:RefSeq:WP_004152294.1
COORDINATES: similar to AA sequence:RefSeq:WP_000083819.1
COORDINATES: protein motif:HMM:TIGR03475.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0006276 - plasmid maintenance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020314728.1
COORDINATES: similar to AA sequence:RefSeq:WP_004139172.1
COORDINATES: similar to AA sequence:RefSeq:WP_015377592.1
COORDINATES: similar to AA sequence:RefSeq:WP_004136830.1
GO:0015643 - toxic substance binding [Evidence IEA]
GO:0030153 - bacteriocin immunity [Evidence IEA]
colicin immunity domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611683.1
GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_065945178.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006812570.1
GO:0097573 - glutathione oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009484901.1
COORDINATES: similar to AA sequence:RefSeq:WP_001111520.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017372681.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611384.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:YP_005224889.1
COORDINATES: similar to AA sequence:RefSeq:WP_014063952.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611470.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611903.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611473.1
GO:0015074 - DNA integration [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013365374.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004938719.1
COORDINATES: similar to AA sequence:RefSeq:WP_014657450.1
GO:0007155 - cell adhesion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004259640.1
COORDINATES: similar to AA sequence:RefSeq:WP_008913439.1
COORDINATES: similar to AA sequence:RefSeq:WP_014657445.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0071555 - cell wall organization [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012147397.1
GO:0015473 - fimbrial usher porin activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0009297 - pilus assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014657442.1
COORDINATES: similar to AA sequence:RefSeq:WP_011341074.1
COORDINATES: similar to AA sequence:RefSeq:NP_708749.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_033635647.1
COORDINATES: protein motif:HMM:NF012422.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006750516.1
COORDINATES: protein motif:HMM:NF012698.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611293.1
COORDINATES: similar to AA sequence:RefSeq:WP_012540156.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017900946.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
RepB family plasmid replication initiator protein
COORDINATES: similar to AA sequence:RefSeq:NP_052640.1
COORDINATES: similar to AA sequence:RefSeq:WP_012540237.1
ParB/RepB/Spo0J family plasmid partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_004118534.1
COORDINATES: similar to AA sequence:RefSeq:WP_007372664.1
GO:0004634 - phosphopyruvate hydratase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010260813.1
COORDINATES: similar to AA sequence:RefSeq:WP_007372658.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01734
Fluoride riboswitches increase expression of downstream genes that help mitigate the toxic effects of very high levels of fluoride; They are found in a wide variety of bacteria and archaea; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_020317122.1
COORDINATES: similar to AA sequence:RefSeq:WP_019105787.1
COORDINATES: similar to AA sequence:RefSeq:WP_017802604.1
sensor domain-containing diguanylate cyclase
COORDINATES: similar to AA sequence:RefSeq:WP_001568044.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001198918.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229758.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229757.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229756.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_005229755.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229748.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_005229747.1
COORDINATES: similar to AA sequence:RefSeq:WP_020316902.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:YP_005229745.1
COORDINATES: similar to AA sequence:RefSeq:WP_020316901.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229743.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611947.1
COORDINATES: similar to AA sequence:RefSeq:WP_002438872.1
As(III)-sensing metalloregulatory transcriptional repressor ArsR
COORDINATES: similar to AA sequence:RefSeq:WP_000855179.1
arsenite efflux transporter metallochaperone ArsD
COORDINATES: similar to AA sequence:RefSeq:WP_004152099.1
arsenite efflux transporter ATPase subunit ArsA
COORDINATES: similar to AA sequence:RefSeq:NP_312401.1
arsenite efflux transporter membrane subunit ArsB
COORDINATES: similar to AA sequence:RefSeq:NP_417960.1
GO:0008794 - arsenate reductase (glutaredoxin) activity [Evidence IEA]
glutaredoxin-dependent arsenate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_008785735.1
COORDINATES: similar to AA sequence:RefSeq:WP_019843130.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0015446 - ATPase-coupled arsenite transmembrane transporter activity [Evidence IEA]
GO:0071722 - detoxification of arsenic-containing substance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000034287.1
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
arsenic metallochaperone ArsD family protein
COORDINATES: similar to AA sequence:RefSeq:WP_001286342.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_016151351.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087171.1
metalloregulator ArsR/SmtB family transcription factor