Nanobdella aerobiophila strain MJ1 chromosome, complete genome.
Archaea; Nanoarchaeota; Nanobdellia; Nanobdellales; Nanobdellaceae; Nanobdella.
Nanobdella aerobiophila gen. nov., sp. nov., a thermoacidophilic, obligate ectosymbiotic archaeon, and proposal of Nanobdellaceae fam. nov., Nanobdellales ord. nov. and Nanobdellia class. nov
Submitted (24-JUN-2019) Contact:Shingo Kato RIKEN BioResource Research Center, Japan Collection of Microorganisms; 3-1-1 Koyadai, Tsukuba, Ibaraki 305-0074, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP019769.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.7\nAssembly Name :: MJ1_1.0\nGenome Coverage :: 300x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/04/2022 10:00:26\nAnnotation Pipeline :: NCBI Prokaryotic Genome Annotation\n Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein set;\n GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 765\nCDSs (total) :: 719\nGenes (coding) :: 719\nCDSs (with protein) :: 719\nGenes (RNA) :: 46\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 0\nPseudo Genes (total) :: 0\nCDSs (without protein) :: 0\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:TIGR02928.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012376.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025040.2
COORDINATES: protein motif:HMM:NF010335.0
COORDINATES: protein motif:HMM:NF009945.0
ribosome biogenesis/translation initiation ATPase RLI
COORDINATES: protein motif:HMM:NF039193.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF025217.2
COORDINATES: protein motif:HMM:NF012457.2
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01057.1
GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00041.1
GO:0004798 - thymidylate kinase activity [Evidence IEA]
GO:0015949 - nucleobase-containing small molecule interconversion [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03675.1
COORDINATES: protein motif:HMM:NF012452.2
COORDINATES: protein motif:HMM:NF012572.2
COORDINATES: protein motif:HMM:TIGR00392.1
GO:0004822 - isoleucine-tRNA ligase activity [Evidence IEA]
GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024853.2
COORDINATES: protein motif:HMM:TIGR00483.1
GO:0003746 - translation elongation factor activity [Evidence IEA]
GO:0006414 - translational elongation [Evidence IEA]
translation elongation factor EF-1 subunit alpha
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: protein motif:HMM:NF012704.2
COORDINATES: protein motif:HMM:NF020364.2
COORDINATES: protein motif:HMM:NF013990.2
COORDINATES: protein motif:HMM:NF016157.2
COORDINATES: protein motif:HMM:NF016842.2
COORDINATES: protein motif:HMM:NF003084.0
COORDINATES: protein motif:HMM:NF012952.2
COORDINATES: protein motif:HMM:NF012558.2
COORDINATES: protein motif:HMM:NF013922.2
COORDINATES: protein motif:HMM:NF003276.0
fibrillarin-like rRNA/tRNA 2'-O-methyltransferase
COORDINATES: protein motif:HMM:NF016787.2
COORDINATES: protein motif:HMM:NF015812.2
COORDINATES: protein motif:HMM:NF003303.0
COORDINATES: protein motif:HMM:NF014706.2
COORDINATES: protein motif:HMM:NF003108.1
COORDINATES: similar to AA sequence:RefSeq:WP_011998398.1
COORDINATES: protein motif:HMM:NF012643.2
COORDINATES: protein motif:HMM:NF013570.2
GO:0004813 - alanine-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006419 - alanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: protein motif:HMM:NF017020.2
COORDINATES: protein motif:HMM:NF037100.2
nucleotidyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF014021.2
COORDINATES: protein motif:HMM:NF015946.2
COORDINATES: protein motif:HMM:NF004453.0
COORDINATES: protein motif:HMM:NF024605.2
COORDINATES: protein motif:HMM:NF017159.2
COORDINATES: protein motif:HMM:NF012998.2
COORDINATES: protein motif:HMM:NF018649.2
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: protein motif:HMM:NF024571.2
COORDINATES: protein motif:HMM:NF017964.2
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: protein motif:HMM:NF015052.2
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF017504.2
COORDINATES: protein motif:HMM:TIGR00291.1
COORDINATES: protein motif:HMM:NF003075.0
archaeal proteasome endopeptidase complex subunit alpha
COORDINATES: protein motif:HMM:NF012600.2
COORDINATES: protein motif:HMM:TIGR00764.1
GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013450.2
COORDINATES: protein motif:HMM:NF001669.0
COORDINATES: protein motif:HMM:NF040953.1
GO:0004844 - uracil DNA N-glycosylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012703.2
COORDINATES: protein motif:HMM:NF012340.2
COORDINATES: protein motif:HMM:NF015960.2
COORDINATES: protein motif:HMM:NF020032.2
COORDINATES: protein motif:HMM:NF007129.0
COORDINATES: protein motif:HMM:NF007175.0
COORDINATES: protein motif:HMM:NF012771.2
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. The beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF006336.0
COORDINATES: protein motif:HMM:NF016859.2
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013417.2
ribosomal L7Ae/L30e/S12e/Gadd45 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018039449.1
COORDINATES: protein motif:HMM:NF012404.2
binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00286.1
GO:0008792 - arginine decarboxylase activity [Evidence IEA]
GO:0006527 - arginine catabolic process [Evidence IEA]; GO:0006596 - polyamine biosynthetic process [Evidence IEA]
arginine decarboxylase, pyruvoyl-dependent
COORDINATES: protein motif:HMM:NF013791.2
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF012679.2
GO:0042254 - ribosome biogenesis [Evidence IEA]
COORDINATES: protein motif:HMM:NF003244.0
COORDINATES: protein motif:HMM:NF002232.0
COORDINATES: protein motif:HMM:TIGR00405.1
COORDINATES: protein motif:HMM:TIGR00065.1
GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02537.1
COORDINATES: protein motif:HMM:NF013575.2
COORDINATES: protein motif:HMM:NF015077.2
GO:0010038 - response to metal ion [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00501.1
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012353.2
NFYB/HAP3 family transcription factor subunit
COORDINATES: protein motif:HMM:NF014796.2
COORDINATES: protein motif:HMM:NF020123.2
GO:0016209 - antioxidant activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024804.2
Lrp/AsnC family transcriptional regulator
COORDINATES: protein motif:HMM:NF013222.2
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF001911.0
COORDINATES: protein motif:HMM:NF025017.2
COORDINATES: protein motif:HMM:NF020083.2
COORDINATES: protein motif:HMM:NF013318.2
COORDINATES: protein motif:HMM:NF013365.2
COORDINATES: protein motif:HMM:NF012911.2
COORDINATES: protein motif:HMM:NF003037.0
GO:0004816 - asparagine-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0006421 - asparaginyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012402.2
COORDINATES: protein motif:HMM:NF023395.2
COORDINATES: protein motif:HMM:NF014723.2
COORDINATES: protein motif:HMM:NF013970.2
type II toxin-antitoxin system VapC family toxin
COORDINATES: protein motif:HMM:NF013117.2
mechanosensitive ion channel family protein
COORDINATES: protein motif:HMM:NF012524.2
COORDINATES: protein motif:HMM:NF013827.2
rhomboid family intramembrane serine protease
COORDINATES: protein motif:HMM:NF023266.2
COORDINATES: protein motif:HMM:NF020892.2
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014527.2
COORDINATES: protein motif:HMM:NF003261.0
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: protein motif:HMM:NF001981.1
COORDINATES: protein motif:HMM:TIGR00293.1
GO:0005515 - protein binding [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014023.2
COORDINATES: protein motif:HMM:NF016537.2
COORDINATES: protein motif:HMM:NF018455.2
probably involved in flagellar biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012652.2
type II/IV secretion system ATPase subunit
COORDINATES: protein motif:HMM:NF006330.0
COORDINATES: protein motif:HMM:NF013232.2
COORDINATES: protein motif:HMM:NF014877.2
COORDINATES: protein motif:HMM:NF010337.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014103.2
N2,N2-dimethylguanosine tRNA methyltransferase
COORDINATES: protein motif:HMM:NF013371.2
COORDINATES: protein motif:HMM:NF012770.2
COORDINATES: protein motif:HMM:TIGR00050.1
GO:0008173 - RNA methyltransferase activity [Evidence IEA]
GO:0009451 - RNA modification [Evidence IEA]
COORDINATES: protein motif:HMM:NF003483.0
GO:0004815 - aspartate-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006422 - aspartyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02274.1
GO:0008829 - dCTP deaminase activity [Evidence IEA]
GO:0009394 - 2'-deoxyribonucleotide metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF003079.0
COORDINATES: protein motif:HMM:TIGR01077.1
COORDINATES: protein motif:HMM:NF001749.0
COORDINATES: protein motif:HMM:TIGR01243.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013094.2
COORDINATES: protein motif:HMM:NF018758.2
COORDINATES: protein motif:HMM:NF013987.2
COORDINATES: protein motif:HMM:TIGR00354.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]; GO:0004527 - exonuclease activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00522.1
GO:0004164 - diphthine synthase activity [Evidence IEA]
GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine [Evidence IEA]
COORDINATES: protein motif:HMM:NF014052.2
COORDINATES: protein motif:HMM:NF021254.2
exosortase/archaeosortase family protein
COORDINATES: protein motif:HMM:NF015610.2
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF013375.2
COORDINATES: protein motif:HMM:TIGR02339.1
COORDINATES: protein motif:HMM:NF013994.2
COORDINATES: protein motif:HMM:NF024258.2
COORDINATES: protein motif:HMM:NF014672.2
COORDINATES: protein motif:HMM:TIGR01647.1
plasma-membrane proton-efflux P-type ATPase
COORDINATES: protein motif:HMM:NF014035.2
sulfite exporter TauE/SafE family protein
COORDINATES: protein motif:HMM:TIGR00729.1
GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]
GO:0006401 - RNA catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF003280.0
RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5
COORDINATES: protein motif:HMM:NF003139.0
COORDINATES: protein motif:HMM:NF003140.0
COORDINATES: protein motif:HMM:NF014044.2
COORDINATES: protein motif:HMM:NF017924.2
COORDINATES: protein motif:HMM:TIGR01444.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: protein motif:HMM:TIGR00236.1
GO:0008761 - UDP-N-acetylglucosamine 2-epimerase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
COORDINATES: protein motif:HMM:TIGR00499.1
GO:0004824 - lysine-tRNA ligase activity [Evidence IEA]
GO:0006430 - lysyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF020287.2
methyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF013429.2
COORDINATES: protein motif:HMM:NF014056.2
COORDINATES: protein motif:HMM:NF024252.2
multiprotein-bridging factor 1 family protein
COORDINATES: protein motif:HMM:TIGR00307.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:NF013582.2
COORDINATES: protein motif:HMM:NF017088.2
COORDINATES: similar to AA sequence:RefSeq:WP_018031397.1
DNA repair and recombination protein RadA
COORDINATES: protein motif:HMM:NF013614.2
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
SufD family Fe-S cluster assembly protein
COORDINATES: protein motif:HMM:NF012234.2
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF013023.2
COORDINATES: protein motif:HMM:NF016382.2
GO:0004519 - endonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00037.1
COORDINATES: protein motif:HMM:NF017044.2
COORDINATES: protein motif:HMM:NF012933.2
COORDINATES: protein motif:HMM:TIGR00590.1
GO:0030337 - DNA polymerase processivity factor activity [Evidence IEA]
proliferating cell nuclear antigen (pcna)
COORDINATES: protein motif:HMM:NF016724.2
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: protein motif:HMM:TIGR00574.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF024116.2
COORDINATES: similar to AA sequence:RefSeq:WP_003232356.1
COORDINATES: protein motif:HMM:NF024811.2
COORDINATES: protein motif:HMM:NF012628.2
COORDINATES: protein motif:HMM:NF013528.2
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF016178.2
COORDINATES: protein motif:HMM:NF012533.2
COORDINATES: protein motif:HMM:TIGR00481.1
YbhB/YbcL family Raf kinase inhibitor-like protein
COORDINATES: protein motif:HMM:NF014058.2
COORDINATES: protein motif:HMM:NF014416.2
COORDINATES: protein motif:HMM:TIGR03724.2
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF003210.0
phenylalanine--tRNA ligase subunit alpha
COORDINATES: protein motif:HMM:TIGR00471.1
GO:0009328 - phenylalanine-tRNA ligase complex [Evidence IEA]
GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA]
GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00414.1
GO:0004828 - serine-tRNA ligase activity [Evidence IEA]
GO:0006434 - seryl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013491.2
GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: protein motif:HMM:NF012514.2
COORDINATES: protein motif:HMM:NF021521.2
COORDINATES: protein motif:HMM:TIGR00089.1
tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase
COORDINATES: protein motif:HMM:TIGR03710.1
2-oxoacid:acceptor oxidoreductase subunit alpha
COORDINATES: protein motif:HMM:NF019499.2
vitamin K epoxide reductase family protein
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: protein motif:HMM:NF019604.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019464.2
COORDINATES: protein motif:HMM:NF014043.2
COORDINATES: protein motif:HMM:NF012869.2
COORDINATES: protein motif:HMM:NF015004.2
pyrimidine dimer DNA glycosylase/endonuclease V
COORDINATES: protein motif:HMM:NF013980.2
COORDINATES: protein motif:HMM:NF014637.2
putative RNA uridine N3 methyltransferase
COORDINATES: protein motif:HMM:TIGR01064.1
GO:0004743 - pyruvate kinase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015581.2
COORDINATES: protein motif:HMM:NF024938.2
COORDINATES: protein motif:HMM:NF010589.0
COORDINATES: protein motif:HMM:NF013324.2
COORDINATES: protein motif:HMM:NF014086.2
COORDINATES: protein motif:HMM:NF003333.0
COORDINATES: protein motif:HMM:NF003218.0
COORDINATES: protein motif:HMM:TIGR02177.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014703.2
COORDINATES: protein motif:HMM:TIGR01384.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF013046.2
COORDINATES: protein motif:HMM:NF020733.2
GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity [Evidence IEA]; GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds [Evidence IEA]
COORDINATES: protein motif:HMM:NF012341.2
COORDINATES: protein motif:HMM:NF013985.2
COORDINATES: protein motif:HMM:NF002096.0
stress response translation initiation inhibitor YciH
COORDINATES: protein motif:HMM:NF013012.2
COORDINATES: protein motif:HMM:NF013273.2
COORDINATES: protein motif:HMM:NF003078.0
COORDINATES: protein motif:HMM:NF013245.2
COORDINATES: protein motif:HMM:TIGR01188.1
COORDINATES: protein motif:HMM:NF012695.2
COORDINATES: protein motif:HMM:NF012694.2
type II secretion system F family protein
COORDINATES: protein motif:HMM:NF012554.2
catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF034186.3
COORDINATES: protein motif:HMM:NF013373.2
COORDINATES: protein motif:HMM:NF013146.2
COORDINATES: protein motif:HMM:NF012796.2
COORDINATES: protein motif:HMM:NF014076.2
COORDINATES: protein motif:HMM:NF014028.2
COORDINATES: protein motif:HMM:TIGR00479.1
GO:0008649 - rRNA methyltransferase activity [Evidence IEA]
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
COORDINATES: protein motif:HMM:NF024627.2
right-handed parallel beta-helix repeat-containing protein
COORDINATES: protein motif:HMM:TIGR01980.1
GO:0005198 - structural molecule activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01979.1
GO:0031071 - cysteine desulfurase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016982.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012492.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013128.2
protein component of the ribosomal E (exit) site that binds newly deacylated tRNAs after peptide bond formation; contains a zinc finger motif; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF021287.2
COORDINATES: protein motif:HMM:NF009623.0
COORDINATES: protein motif:HMM:NF019179.2
COORDINATES: protein motif:HMM:NF015428.2
COORDINATES: protein motif:HMM:NF040570.1
RNA-guided endonuclease TnpB family protein
COORDINATES: protein motif:HMM:NF012364.2
COORDINATES: protein motif:HMM:NF014036.2
COORDINATES: protein motif:HMM:NF037434.2
COORDINATES: protein motif:HMM:NF003077.0
translation initiation factor IF-2 subunit gamma
COORDINATES: protein motif:HMM:TIGR00435.1
GO:0004817 - cysteine-tRNA ligase activity [Evidence IEA]
GO:0006423 - cysteinyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014750.2
COORDINATES: protein motif:HMM:TIGR00446.1
RsmB/NOP family class I SAM-dependent RNA methyltransferase
COORDINATES: protein motif:HMM:NF002317.0
GO:0004427 - inorganic diphosphate phosphatase activity [Evidence IEA]
GO:0006796 - phosphate-containing compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013029.2
COORDINATES: protein motif:HMM:NF003088.0
GO:0006325 - chromatin organization [Evidence IEA]
COORDINATES: protein motif:HMM:NF007171.0
COORDINATES: protein motif:HMM:NF003089.1
COORDINATES: protein motif:HMM:NF013348.2
adenine nucleotide alpha hydrolase family protein
COORDINATES: protein motif:HMM:NF024793.2
COORDINATES: similar to AA sequence:RefSeq:WP_018035149.1
COORDINATES: protein motif:HMM:NF013224.2
Lrp/AsnC ligand binding domain-containing protein
COORDINATES: protein motif:HMM:TIGR03684.1
COORDINATES: protein motif:HMM:NF016765.2
COORDINATES: protein motif:HMM:NF013983.2
2-(3-amino-3-carboxypropyl)histidine synthase subunit
COORDINATES: protein motif:HMM:NF013213.2
COORDINATES: protein motif:HMM:NF014102.2
COORDINATES: protein motif:HMM:TIGR02237.1
DNA repair and recombination protein RadB
COORDINATES: protein motif:HMM:TIGR03671.1
COORDINATES: protein motif:HMM:TIGR03676.1
GO:0003747 - translation release factor activity [Evidence IEA]
GO:0006415 - translational termination [Evidence IEA]
COORDINATES: protein motif:HMM:NF013341.2
COORDINATES: protein motif:HMM:NF014005.2
COORDINATES: protein motif:HMM:TIGR01012.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:NF015880.2
one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF011118.0
COORDINATES: protein motif:HMM:NF012782.2
COORDINATES: protein motif:HMM:NF003229.0
COORDINATES: protein motif:HMM:NF001679.0
COORDINATES: protein motif:HMM:TIGR00537.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00633.1
COORDINATES: protein motif:HMM:NF012398.2
COORDINATES: protein motif:HMM:NF017380.2
COORDINATES: protein motif:HMM:TIGR02187.1
COORDINATES: protein motif:HMM:NF013999.2
COORDINATES: protein motif:HMM:NF001988.0
COORDINATES: protein motif:HMM:NF012361.2
COORDINATES: protein motif:HMM:NF003302.0
GO:0004807 - triose-phosphate isomerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012905.2
GO:0016021 - integral component of membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: protein motif:HMM:NF012955.2
COORDINATES: protein motif:HMM:NF008957.0
GO:0004823 - leucine-tRNA ligase activity [Evidence IEA]
GO:0006429 - leucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013202.2
COORDINATES: protein motif:HMM:NF014636.2
COORDINATES: protein motif:HMM:NF021916.2
COORDINATES: protein motif:HMM:NF025019.2
COORDINATES: protein motif:HMM:NF015048.2
COORDINATES: protein motif:HMM:NF013997.2
COORDINATES: protein motif:HMM:TIGR00372.1
GO:0004518 - nuclease activity [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02585.1
GO:0003674 - molecular_function [Evidence IEA]
type I-B CRISPR-associated protein Cas7/Cst2/DevR
COORDINATES: protein motif:HMM:TIGR02593.1
COORDINATES: protein motif:HMM:TIGR01587.1
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03641.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]
type I-B CRISPR-associated endonuclease Cas1b
COORDINATES: protein motif:HMM:TIGR01573.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF040521.1
COORDINATES: protein motif:HMM:TIGR00348.1
GO:0019812 - type I site-specific deoxyribonuclease complex [Evidence IEA]
GO:0009035 - type I site-specific deoxyribonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
HsdR family type I site-specific deoxyribonuclease
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: protein motif:HMM:NF016362.2
PmeII family type II restriction endonuclease
COORDINATES: protein motif:HMM:NF014442.2
COORDINATES: protein motif:HMM:NF039222.1
COORDINATES: protein motif:HMM:NF024994.2
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF016164.2
COORDINATES: protein motif:HMM:NF015983.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013100583.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008986 - pyruvate, water dikinase activity [Evidence IEA]; GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]; GO:0006090 - pyruvate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03677.1
COORDINATES: protein motif:HMM:NF014047.2
COORDINATES: protein motif:HMM:TIGR01054.1
GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF001670.0
COORDINATES: protein motif:HMM:NF019374.2
COORDINATES: protein motif:HMM:NF013347.2
COORDINATES: protein motif:HMM:NF025865.2
COORDINATES: protein motif:HMM:NF014080.2
COORDINATES: protein motif:HMM:NF003217.0
Glu-tRNA(Gln) amidotransferase subunit GatD
COORDINATES: protein motif:HMM:NF013734.2
COORDINATES: protein motif:HMM:NF002294.0
COORDINATES: protein motif:HMM:NF013053.2
COORDINATES: protein motif:HMM:NF006811.0
COORDINATES: protein motif:HMM:NF013905.2
COORDINATES: protein motif:HMM:TIGR00310.1
ZPR1 zinc finger domain-containing protein
COORDINATES: protein motif:HMM:NF016363.2
COORDINATES: protein motif:HMM:NF014030.2
GO:0016272 - prefoldin complex [Evidence IEA]
GO:0051082 - unfolded protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF003169.0
COORDINATES: protein motif:HMM:NF017867.2
COORDINATES: protein motif:HMM:NF006333.0
COORDINATES: protein motif:HMM:NF014011.2
COORDINATES: protein motif:HMM:NF006332.0
COORDINATES: protein motif:HMM:NF003258.0
COORDINATES: protein motif:HMM:NF003312.0
COORDINATES: protein motif:HMM:NF028216.2
COORDINATES: protein motif:HMM:NF012463.2
COORDINATES: protein motif:HMM:TIGR03630.1
COORDINATES: protein motif:HMM:NF016246.2
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF015965.2
COORDINATES: protein motif:HMM:NF003314.0
COORDINATES: protein motif:HMM:TIGR02258.1
GO:0008664 - 2'-5'-RNA ligase activity [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]
COORDINATES: protein motif:HMM:NF014244.2
COORDINATES: protein motif:HMM:NF014099.2
COORDINATES: protein motif:HMM:TIGR00094.1
GO:0009982 - pseudouridine synthase activity [Evidence IEA]
GO:0031119 - tRNA pseudouridine synthesis [Evidence IEA]
COORDINATES: protein motif:HMM:NF008927.0
COORDINATES: protein motif:HMM:NF012564.2
COORDINATES: protein motif:HMM:NF013372.2
the function of this protein in the ribosome is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF003320.0
COORDINATES: protein motif:HMM:TIGR03674.1
COORDINATES: protein motif:HMM:TIGR02094.1
COORDINATES: protein motif:HMM:NF015113.2
His/Gly/Thr/Pro-type tRNA ligase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR00649.1
GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00490.1
COORDINATES: protein motif:HMM:NF020917.2
GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA]
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
CDGSH iron-sulfur domain-containing protein
COORDINATES: protein motif:HMM:TIGR03679.1
COORDINATES: protein motif:HMM:NF012345.2
COORDINATES: protein motif:HMM:NF017482.2
COORDINATES: protein motif:HMM:NF017803.2
COORDINATES: protein motif:HMM:NF018595.2
COORDINATES: protein motif:HMM:NF024851.2
COORDINATES: protein motif:HMM:NF012780.2
involved in the 3' to 5' degradation of a variety of RNA species; forms a trimer of heterodimers (hexamer) with Rrp42; Rrp41 is the catalytically active subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF003326.0
COORDINATES: protein motif:HMM:NF013401.2
COORDINATES: nucleotide motif:Rfam:14.4:RF01959
COORDINATES: protein motif:HMM:TIGR00432.2
GO:0016763 - pentosyltransferase activity [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
tRNA guanosine(15) transglycosylase TgtA
COORDINATES: protein motif:HMM:NF012429.2
COORDINATES: protein motif:HMM:NF025016.2
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
cytochrome b N-terminal domain-containing protein
COORDINATES: nucleotide motif:Rfam:14.4:RF02540
COORDINATES: protein motif:HMM:NF018290.2
COORDINATES: protein motif:HMM:TIGR00322.1
COORDINATES: protein motif:HMM:NF015020.2
COORDINATES: protein motif:HMM:NF012321.2
COORDINATES: protein motif:HMM:NF003239.0
COORDINATES: protein motif:HMM:NF004711.0
COORDINATES: protein motif:HMM:NF003125.0
COORDINATES: protein motif:HMM:NF003214.0
COORDINATES: protein motif:HMM:TIGR00442.1
GO:0004821 - histidine-tRNA ligase activity [Evidence IEA]
GO:0006427 - histidyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013024.2
COORDINATES: protein motif:HMM:NF006343.0
COORDINATES: protein motif:HMM:TIGR01038.1
COORDINATES: protein motif:HMM:NF012416.2
COORDINATES: protein motif:HMM:NF013811.2
GO:0046537 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity [Evidence IEA]
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
2,3-bisphosphoglycerate-independent phosphoglycerate mutase
COORDINATES: protein motif:HMM:TIGR02504.1
GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
adenosylcobalamin-dependent ribonucleoside-diphosphate reductase
COORDINATES: protein motif:HMM:NF037134.2
COORDINATES: protein motif:HMM:NF012241.2
COORDINATES: protein motif:HMM:TIGR04336.1
COORDINATES: protein motif:HMM:TIGR00134.1
GO:0050567 - glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006424 - glutamyl-tRNA aminoacylation [Evidence IEA]
Glu-tRNA(Gln) amidotransferase subunit GatE
COORDINATES: protein motif:HMM:NF020933.2
DNA double-strand break repair nuclease NurA
COORDINATES: protein motif:HMM:NF006342.0
COORDINATES: protein motif:HMM:NF012627.2
COORDINATES: protein motif:HMM:NF004424.0
COORDINATES: protein motif:HMM:NF016219.2