Thermococcus indicus strain IOH1 plasmid pTI1, complete sequence.
Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.
Thermococcus indicus sp. nov., a Fe(III)-reducing hyperthermophilic archaeon isolated from the Onnuri vent field of the Central Indian Ocean ridge
Submitted (05-JUN-2019) Marine Biotechnology Research Center, Korea Institute of Ocean Science & Technology (KIOST), 3426, Resarch building 4, 385, Heaeyang-ro, Yeongdo-gu, Busan 49111, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP040847.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT v. -\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 294.43x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/28/2023 02:24:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,452\nCDSs (total) :: 2,400\nGenes (coding) :: 2,357\nCDSs (with protein) :: 2,357\nGenes (RNA) :: 52\nrRNAs :: 2, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 1, 1 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 2\nPseudo Genes (total) :: 43\nCDSs (without protein) :: 43\nPseudo Genes (ambiguous residues) :: 0 of 43\nPseudo Genes (frameshifted) :: 28 of 43\nPseudo Genes (incomplete) :: 15 of 43\nPseudo Genes (internal stop) :: 0 of 43\nCRISPR Arrays :: 5\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Indian Ocean: Onnuri Vent Field, Central Indian Ocean ridge
COORDINATES: similar to AA sequence:RefSeq:WP_004067399.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
ribbon-helix-helix domain-containing protein
COORDINATES: protein motif:HMM:NF020811.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012819831.1
COORDINATES: protein motif:HMM:NF016876.2
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012819834.1