Mycolicibacterium fluoranthenivorans strain 2A plasmid unnamed2.
Mycolicibacterium fluoranthenivorans (Mycobacterium fluoranthenivorans)
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycolicibacterium.
Draft genome sequence of four isobutane-metabolizing strains capable of cometabolically degrading diverse ether contaminants
Submitted (10-JUL-2020) Plant and Microbial Biology, North Carolina State University, 4545 Thomas Hall, North Carolina State University, Raleigh, NC 27695, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP059893.1.\nBacteria and source DNA available from Michael Hyman, Thomas Hall\n4545, North carolina state university.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: PacBio De Novo Assembly Pipeline on CLC\n Genomics Workbench v. 20.0.2\nAssembly Name :: Isobutane_Mycolici_2A\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 47.47x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/15/2022 02:11:41\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,864\nCDSs (total) :: 6,808\nGenes (coding) :: 6,733\nCDSs (with protein) :: 6,733\nGenes (RNA) :: 56\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 3\nPseudo Genes (total) :: 75\nCDSs (without protein) :: 75\nPseudo Genes (ambiguous residues) :: 0 of 75\nPseudo Genes (frameshifted) :: 17 of 75\nPseudo Genes (incomplete) :: 63 of 75\nPseudo Genes (internal stop) :: 3 of 75\nPseudo Genes (multiple problems) :: 7 of 75\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_014805311.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_086558139.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015298077.1
GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015298297.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011562946.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006243955.1
COORDINATES: similar to AA sequence:RefSeq:WP_006243956.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298302.1
COORDINATES: similar to AA sequence:RefSeq:WP_006243958.1
COORDINATES: similar to AA sequence:RefSeq:WP_006243960.1
COORDINATES: similar to AA sequence:RefSeq:WP_006243961.1
COORDINATES: similar to AA sequence:RefSeq:WP_011562940.1
COORDINATES: similar to AA sequence:RefSeq:WP_006243963.1
COORDINATES: similar to AA sequence:RefSeq:WP_006243965.1
COORDINATES: similar to AA sequence:RefSeq:WP_011599405.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015298126.1
GO:0004527 - exonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015298131.1
COORDINATES: similar to AA sequence:RefSeq:WP_011562929.1
COORDINATES: similar to AA sequence:RefSeq:WP_013470244.1
COORDINATES: similar to AA sequence:RefSeq:WP_011562910.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011562909.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298155.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298156.1
COORDINATES: similar to AA sequence:RefSeq:WP_019738894.1
COORDINATES: similar to AA sequence:RefSeq:WP_015292642.1
COORDINATES: similar to AA sequence:RefSeq:WP_006243984.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298162.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298164.1
COORDINATES: similar to AA sequence:RefSeq:WP_011562902.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298168.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_005113570.1
COORDINATES: similar to AA sequence:RefSeq:WP_005113571.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298173.1
GO:0009306 - protein secretion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015745763.1
COORDINATES: similar to AA sequence:RefSeq:WP_041767552.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005143596.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006244011.1
COORDINATES: similar to AA sequence:RefSeq:WP_006246268.1
GO:0015074 - DNA integration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006243704.1
COORDINATES: similar to AA sequence:RefSeq:WP_006243703.1
COORDINATES: similar to AA sequence:RefSeq:WP_006243702.1
COORDINATES: similar to AA sequence:RefSeq:WP_003887009.1
COORDINATES: similar to AA sequence:RefSeq:WP_019738159.1
COORDINATES: similar to AA sequence:RefSeq:WP_019738160.1
COORDINATES: similar to AA sequence:RefSeq:WP_011856877.1
COORDINATES: similar to AA sequence:RefSeq:WP_019738128.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014214334.1
COORDINATES: similar to AA sequence:RefSeq:WP_007172295.1
COORDINATES: similar to AA sequence:RefSeq:WP_006244022.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611891.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006244028.1
COORDINATES: similar to AA sequence:RefSeq:WP_006244029.1
COORDINATES: similar to AA sequence:RefSeq:WP_011562887.1
COORDINATES: similar to AA sequence:RefSeq:WP_009647295.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_011562884.1
COORDINATES: similar to AA sequence:RefSeq:WP_011562883.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011562882.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298190.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298191.1
COORDINATES: similar to AA sequence:RefSeq:WP_011562879.1
COORDINATES: similar to AA sequence:RefSeq:WP_011562878.1
COORDINATES: similar to AA sequence:RefSeq:WP_011562877.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298195.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298196.1
COORDINATES: similar to AA sequence:RefSeq:WP_011562874.1
COORDINATES: similar to AA sequence:RefSeq:WP_006244106.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298198.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298199.1
COORDINATES: similar to AA sequence:RefSeq:WP_017583129.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011562871.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015298201.1
COORDINATES: similar to AA sequence:RefSeq:WP_011767997.1
COORDINATES: similar to AA sequence:RefSeq:WP_011562869.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298204.1
COORDINATES: similar to AA sequence:RefSeq:WP_011562867.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298206.1
COORDINATES: similar to AA sequence:RefSeq:WP_011562866.1
COORDINATES: similar to AA sequence:RefSeq:WP_006244115.1
COORDINATES: similar to AA sequence:RefSeq:WP_011562864.1
COORDINATES: similar to AA sequence:RefSeq:WP_011562863.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011562862.1
GO:0003674 - molecular_function [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011562861.1
COORDINATES: similar to AA sequence:RefSeq:WP_006244120.1
COORDINATES: similar to AA sequence:RefSeq:WP_011562859.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298216.1
COORDINATES: similar to AA sequence:RefSeq:WP_005123437.1
COORDINATES: similar to AA sequence:RefSeq:WP_003401514.1
GO:0005576 - extracellular region [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
COORDINATES: protein motif:HMM:NF021498.2
COORDINATES: similar to AA sequence:RefSeq:WP_011726265.1
COORDINATES: similar to AA sequence:RefSeq:WP_019306091.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298219.1
COORDINATES: similar to AA sequence:RefSeq:WP_011562855.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
type VII secretion-associated serine protease mycosin
COORDINATES: similar to AA sequence:RefSeq:WP_011562854.1
type VII secretion integral membrane protein EccD
COORDINATES: similar to AA sequence:RefSeq:WP_011767998.1
COORDINATES: similar to AA sequence:RefSeq:WP_011562852.1
COORDINATES: similar to AA sequence:RefSeq:WP_006244130.1
COORDINATES: similar to AA sequence:RefSeq:WP_011896257.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_006244132.1
COORDINATES: similar to AA sequence:RefSeq:WP_011599363.1
COORDINATES: similar to AA sequence:RefSeq:WP_014985674.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005092119.1
COORDINATES: similar to AA sequence:RefSeq:WP_016894616.1
COORDINATES: similar to AA sequence:RefSeq:WP_011896261.1
COORDINATES: similar to AA sequence:RefSeq:WP_011896262.1
COORDINATES: similar to AA sequence:RefSeq:WP_015297724.1
COORDINATES: similar to AA sequence:RefSeq:WP_014211247.1
COORDINATES: similar to AA sequence:RefSeq:WP_014211249.1
COORDINATES: similar to AA sequence:RefSeq:WP_014211250.1
COORDINATES: similar to AA sequence:RefSeq:WP_014211252.1
COORDINATES: similar to AA sequence:RefSeq:WP_014211253.1
COORDINATES: similar to AA sequence:RefSeq:WP_011562810.1
COORDINATES: similar to AA sequence:RefSeq:WP_014211255.1
COORDINATES: similar to AA sequence:RefSeq:WP_005113456.1
COORDINATES: similar to AA sequence:RefSeq:WP_011562805.1
RAMP superfamily CRISPR-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_014211259.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298108.1
COORDINATES: similar to AA sequence:RefSeq:WP_014211262.1
COORDINATES: similar to AA sequence:RefSeq:WP_014211263.1
COORDINATES: similar to AA sequence:RefSeq:WP_014211264.1
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011562799.1
COORDINATES: similar to AA sequence:RefSeq:WP_006244157.1
COORDINATES: similar to AA sequence:RefSeq:WP_006244158.1
COORDINATES: similar to AA sequence:RefSeq:WP_005113447.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma 54-interacting transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006244160.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298253.1
COORDINATES: similar to AA sequence:RefSeq:WP_006244162.1
COORDINATES: similar to AA sequence:RefSeq:WP_005114948.1