Rhizobium indicum strain JKLM 12A2 plasmid pPR12A204, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
Genome sequences of pea root nodulating Rhizobium spp
Submitted (25-MAY-2020) National Centre for Microbial Resource, National Centre for Cell Science, First floor, Central Tower, Sai Trinity Building Garware Circle, Sutarwadi, Pune, Maharashtra 411021, India
Submitted (21-MAY-2019) National Centre for Microbial Resource, National Centre for Cell Science, First floor, Central Tower, Sai Trinity Building Garware Circle, Sutarwadi, Pune, Maharashtra 411021, India
REFSEQ INFORMATION: The reference sequence is identical to\nCP054025.1.\nBacteria and source DNA available from MCC 3961.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 18-MAY-2020\nAssembly Method :: Canu v. v. 2.0; bowtie2 v. v. 2.3.4.1\nAssembly Name :: tig\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 91.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/06/2023 04:11:01\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,301\nCDSs (total) :: 7,237\nGenes (coding) :: 7,056\nCDSs (with protein) :: 7,056\nGenes (RNA) :: 64\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 4\nPseudo Genes (total) :: 181\nCDSs (without protein) :: 181\nPseudo Genes (ambiguous residues) :: 0 of 181\nPseudo Genes (frameshifted) :: 108 of 181\nPseudo Genes (incomplete) :: 124 of 181\nPseudo Genes (internal stop) :: 18 of 181\nPseudo Genes (multiple problems) :: 63 of 181\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_018484110.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012760159.1
four-carbon acid sugar kinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018855857.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003549484.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003571772.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020665211.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018246672.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003549488.1
GO:0009436 - glyoxylate catabolic process [Evidence IEA]; GO:0071704 - organic substance metabolic process [Evidence IEA]
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003549495.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_018484100.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011649627.1
GO:0050570 - 4-hydroxythreonine-4-phosphate dehydrogenase activity [Evidence IEA]
GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]
4-hydroxythreonine-4-phosphate dehydrogenase PdxA
COORDINATES: similar to AA sequence:RefSeq:WP_020047573.1
GO:0110001 - toxin-antitoxin complex [Evidence IEA]
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_012760169.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012489487.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020047575.1
COORDINATES: similar to AA sequence:RefSeq:WP_018070805.1
COORDINATES: similar to AA sequence:RefSeq:WP_007691082.1
GO:0004813 - alanine-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006419 - alanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003549514.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020572066.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018070801.1
COORDINATES: similar to AA sequence:RefSeq:WP_011649619.1
COORDINATES: similar to AA sequence:RefSeq:WP_003576684.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003576683.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018496227.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012759889.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020047580.1
COORDINATES: similar to AA sequence:RefSeq:WP_016735686.1
GO:0004370 - glycerol kinase activity [Evidence IEA]
GO:0006071 - glycerol metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011649612.1
COORDINATES: similar to AA sequence:RefSeq:WP_007788434.1
COORDINATES: similar to AA sequence:RefSeq:WP_003530329.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003595818.1
COORDINATES: similar to AA sequence:RefSeq:WP_018246651.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549535.1
COORDINATES: similar to AA sequence:RefSeq:WP_007637185.1
GO:0009331 - glycerol-3-phosphate dehydrogenase complex [Evidence IEA]
GO:0004368 - glycerol-3-phosphate dehydrogenase (quinone) activity [Evidence IEA]
GO:0006072 - glycerol-3-phosphate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007637186.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_020047587.1
GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007637189.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017501669.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018246645.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011649602.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496239.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549548.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549551.1
COORDINATES: similar to AA sequence:RefSeq:WP_020397458.1
COORDINATES: similar to AA sequence:RefSeq:WP_018246641.1
COORDINATES: similar to AA sequence:RefSeq:WP_002711250.1
ABC-F family ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007637215.1
COORDINATES: similar to AA sequence:RefSeq:WP_018070777.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549565.1
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
DHA2 family efflux MFS transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011649594.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969330.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011649592.1
GO:0008927 - mannonate dehydratase activity [Evidence IEA]
GO:0006064 - glucuronate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017997064.1
COORDINATES: similar to AA sequence:RefSeq:WP_012759914.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549579.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997061.1
COORDINATES: similar to AA sequence:RefSeq:WP_017992439.1
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
nucleoside-diphosphate sugar epimerase/dehydratase
COORDINATES: similar to AA sequence:RefSeq:WP_017992440.1
GO:0016740 - transferase activity [Evidence IEA]
GO:0006486 - protein glycosylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654073.1
COORDINATES: similar to AA sequence:RefSeq:WP_003595755.1
COORDINATES: similar to AA sequence:RefSeq:WP_003571859.1
COORDINATES: similar to AA sequence:RefSeq:WP_007637243.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012759993.1
COORDINATES: similar to AA sequence:RefSeq:WP_017957624.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012759995.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496119.1
GO:0033232 - ABC-type D-methionine transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0048473 - D-methionine transport [Evidence IEA]
methionine ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003571872.1
GO:0033232 - ABC-type D-methionine transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003549175.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_012560117.1
GO:0031419 - cobalamin binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004494 - methylmalonyl-CoA mutase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017957630.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008529912.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003549181.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047629.1
COORDINATES: similar to AA sequence:RefSeq:WP_017992291.1
GO:0004039 - allophanate hydrolase activity [Evidence IEA]
GO:0019627 - urea metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017957635.1
GO:0004847 - urea carboxylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018496126.1
urea carboxylase-associated family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018247024.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997231.1
COORDINATES: similar to AA sequence:RefSeq:WP_017957639.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496130.1
putative urea ABC transporter substrate-binding protein
COORDINATES: nucleotide motif:Rfam:14.4:RF00442
guanidine-I (ykkC/yxkD leader) riboswitch; Guanidine-I riboswitches control genes whose products are involved in modification or pumping out guanidine as a toxic compound from bacteria; This is class of guanidine riboswitches is based on the ykkC/yxkD leader; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_003549191.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011649802.1
COORDINATES: similar to AA sequence:RefSeq:WP_003595714.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760015.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969248.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_020047641.1
COORDINATES: similar to AA sequence:RefSeq:WP_017957645.1
GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018496134.1
cytochrome d ubiquinol oxidase subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_018069321.1
GO:0070069 - cytochrome complex [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]
GO:0019646 - aerobic electron transport chain [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020047645.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760022.1
GO:0055051 - ATP-binding cassette (ABC) transporter complex, integrated substrate binding [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0033230 - ABC-type cysteine transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0033228 - cysteine export across plasma membrane [Evidence IEA]
thiol reductant ABC exporter subunit CydD
COORDINATES: similar to AA sequence:RefSeq:WP_003595702.1
GbsR/MarR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018448952.1
COORDINATES: similar to AA sequence:RefSeq:WP_016735528.1
COORDINATES: similar to AA sequence:RefSeq:WP_011649788.1
COORDINATES: similar to AA sequence:RefSeq:WP_018448955.1
COORDINATES: similar to AA sequence:RefSeq:WP_007637331.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760031.1
COORDINATES: similar to AA sequence:RefSeq:WP_012560147.1
COORDINATES: similar to AA sequence:RefSeq:WP_003571910.1
COORDINATES: similar to AA sequence:RefSeq:WP_018069333.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247001.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018484182.1
GO:0008934 - inositol monophosphate 1-phosphatase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0006020 - inositol metabolic process [Evidence IEA]; GO:0046855 - inositol phosphate dephosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020047659.1
COORDINATES: similar to AA sequence:RefSeq:WP_007637338.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969227.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_011649770.1
dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003549251.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549253.1
COORDINATES: similar to AA sequence:RefSeq:WP_018448965.1
COORDINATES: similar to AA sequence:RefSeq:WP_017957455.1
COORDINATES: similar to AA sequence:RefSeq:WP_018448966.1
COORDINATES: similar to AA sequence:RefSeq:WP_018484172.1
COORDINATES: similar to AA sequence:RefSeq:WP_012560163.1
COORDINATES: similar to AA sequence:RefSeq:WP_003595657.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007637355.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018448971.1
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
SfnB family sulfur acquisition oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_017992317.1
COORDINATES: similar to AA sequence:RefSeq:WP_018246983.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549263.1
COORDINATES: similar to AA sequence:RefSeq:WP_003595646.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496161.1
GO:0016853 - isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004680247.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496163.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969209.1
COORDINATES: similar to AA sequence:RefSeq:WP_018484160.1
COORDINATES: similar to AA sequence:RefSeq:WP_017957474.1
COORDINATES: similar to AA sequence:RefSeq:WP_017957475.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047685.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047686.1
COORDINATES: similar to AA sequence:RefSeq:WP_018099332.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047688.1
COORDINATES: similar to AA sequence:RefSeq:WP_018484159.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0000976 - transcription cis-regulatory region binding [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]; GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003576483.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496171.1
COORDINATES: similar to AA sequence:RefSeq:WP_018448979.1
COORDINATES: similar to AA sequence:RefSeq:WP_017957484.1
COORDINATES: similar to AA sequence:RefSeq:WP_003576475.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969201.1
COORDINATES: similar to AA sequence:RefSeq:WP_018484153.1
COORDINATES: similar to AA sequence:RefSeq:WP_018484152.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019200 - carbohydrate kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018484151.1
COORDINATES: similar to AA sequence:RefSeq:WP_018448984.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969194.1
COORDINATES: similar to AA sequence:RefSeq:WP_017957492.1
COORDINATES: similar to AA sequence:RefSeq:WP_003595628.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549301.1
GO:0033744 - L-methionine:thioredoxin-disulfide S-oxidoreductase activity [Evidence IEA]; GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (S)-S-oxide reductase MsrA
COORDINATES: similar to AA sequence:RefSeq:WP_007637388.1
COORDINATES: similar to AA sequence:RefSeq:WP_017957495.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047707.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047709.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997178.1
COORDINATES: similar to AA sequence:RefSeq:WP_018246957.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496189.1
COORDINATES: similar to AA sequence:RefSeq:WP_018484136.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020047714.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489775.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0016780 - phosphotransferase activity, for other substituted phosphate groups [Evidence IEA]
GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
CDP-alcohol phosphatidyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011649720.1
lysophospholipid acyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017957505.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969179.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549335.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969177.1
GO:0032559 - adenyl ribonucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013845600.1
COORDINATES: similar to AA sequence:RefSeq:WP_014531426.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014528605.1
COORDINATES: similar to AA sequence:RefSeq:WP_011651531.1
GO:0046872 - metal ion binding [Evidence IEA]
formylglycine-generating enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008535095.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496815.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549338.1
COORDINATES: similar to AA sequence:RefSeq:WP_012559995.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012760089.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_018246945.1
GO:0005515 - protein binding [Evidence IEA]
GO:0006749 - glutathione metabolic process [Evidence IEA]
glutathione-dependent disulfide-bond oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_003576433.1
COORDINATES: similar to AA sequence:RefSeq:WP_017992354.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047725.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572011.1
COORDINATES: similar to AA sequence:RefSeq:WP_016735560.1
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018484121.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969166.1
COORDINATES: similar to AA sequence:RefSeq:WP_018069403.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997156.1
COORDINATES: similar to AA sequence:RefSeq:WP_018246929.1
GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010973741.1
GO:0004372 - glycine hydroxymethyltransferase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0070905 - serine binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0019264 - glycine biosynthetic process from serine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007256163.1
GO:0005515 - protein binding [Evidence IEA]; GO:0008115 - sarcosine oxidase activity [Evidence IEA]
GO:1901053 - sarcosine catabolic process [Evidence IEA]
sarcosine oxidase subunit gamma family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020010180.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019566908.1
COORDINATES: similar to AA sequence:RefSeq:WP_008507740.1
GO:0008115 - sarcosine oxidase activity [Evidence IEA]
GO:0046653 - tetrahydrofolate metabolic process [Evidence IEA]
sarcosine oxidase subunit beta family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010973736.1
COORDINATES: similar to AA sequence:RefSeq:WP_018071451.1
COORDINATES: similar to AA sequence:RefSeq:WP_011428704.1
COORDINATES: similar to AA sequence:RefSeq:WP_007606920.1
COORDINATES: similar to AA sequence:RefSeq:WP_007700336.1
COORDINATES: similar to AA sequence:RefSeq:WP_003504482.1
glycine betaine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018327588.1
glycine betaine/L-proline ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010973454.1
COORDINATES: similar to AA sequence:RefSeq:WP_018327586.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047333.1
COORDINATES: similar to AA sequence:RefSeq:WP_017957519.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760101.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760102.1
COORDINATES: similar to AA sequence:RefSeq:WP_011649695.1
patatin-like phospholipase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011662090.1
COORDINATES: protein motif:HMM:NF024832.2
COORDINATES: protein motif:HMM:NF016145.2
polysaccharide pyruvyl transferase family protein
COORDINATES: protein motif:HMM:NF017522.2
TylF/MycF/NovP-related O-methyltransferase
Ig domain-containing protein group 1 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011649681.1
GO:0015159 - polysaccharide transmembrane transporter activity [Evidence IEA]
GO:0015774 - polysaccharide transport [Evidence IEA]
polysaccharide biosynthesis/export family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004673257.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549400.1
GO:0008483 - transaminase activity [Evidence IEA]
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_017957532.1
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012760117.1
GO:0016746 - acyltransferase activity [Evidence IEA]; GO:0120225 - coenzyme A binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008532368.1
COORDINATES: similar to AA sequence:RefSeq:WP_018493924.1
COORDINATES: similar to AA sequence:RefSeq:WP_018493925.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047529.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017957538.1
COORDINATES: similar to AA sequence:RefSeq:WP_017957539.1
COORDINATES: similar to AA sequence:RefSeq:WP_018071883.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047533.1
WecB/TagA/CpsF family glycosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_076612064.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012650495.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003549411.1
choice-of-anchor Q domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011649667.1
right-handed parallel beta-helix repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003549416.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760129.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483893.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012760131.1
COORDINATES: similar to AA sequence:RefSeq:WP_011424687.1
polysaccharide biosynthesis tyrosine autokinase
COORDINATES: similar to AA sequence:RefSeq:WP_003595475.1
GO:0008446 - GDP-mannose 4,6-dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003549429.1
COORDINATES: similar to AA sequence:RefSeq:WP_007797522.1
CaiB/BaiF CoA-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018070991.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0004174 - electron-transferring-flavoprotein dehydrogenase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0022900 - electron transport chain [Evidence IEA]
electron transfer flavoprotein-ubiquinone oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_018447575.1
GO:0070403 - NAD+ binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006168259.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517294.1
COORDINATES: similar to AA sequence:RefSeq:WP_018244732.1
GO:0008964 - phosphoenolpyruvate carboxylase activity [Evidence IEA]
GO:0015977 - carbon fixation [Evidence IEA]; GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018244731.1
COORDINATES: similar to AA sequence:RefSeq:WP_007796150.1
GO:0016310 - phosphorylation [Evidence IEA]
aminoglycoside phosphotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007796147.1
COORDINATES: similar to AA sequence:RefSeq:WP_007796144.1
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007796141.1
amino acid ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007796138.1
COORDINATES: similar to AA sequence:RefSeq:WP_007796134.1
GO:0004634 - phosphopyruvate hydratase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007796131.1
COORDINATES: similar to AA sequence:RefSeq:WP_018244723.1
COORDINATES: protein motif:HMM:NF014684.2
COORDINATES: similar to AA sequence:RefSeq:WP_007796124.1
GO:0015803 - branched-chain amino acid transport [Evidence IEA]
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_007796120.1
COORDINATES: similar to AA sequence:RefSeq:WP_007796118.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007796115.1
COORDINATES: similar to AA sequence:RefSeq:WP_007796112.1
COORDINATES: similar to AA sequence:RefSeq:WP_007796109.1
COORDINATES: protein motif:HMM:NF019310.2
GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007796104.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007796102.1
COORDINATES: similar to AA sequence:RefSeq:WP_007796099.1
COORDINATES: protein motif:HMM:NF015513.2
COORDINATES: similar to AA sequence:RefSeq:WP_020047544.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997123.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020487144.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760142.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012760143.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760144.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760145.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558110.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760147.1
COORDINATES: similar to AA sequence:RefSeq:WP_012483408.1
GO:0016746 - acyltransferase activity [Evidence IEA]; GO:0071972 - peptidoglycan L,D-transpeptidase activity [Evidence IEA]
GO:0018104 - peptidoglycan-protein cross-linking [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004668551.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538594.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018496205.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
adenylate/guanylate cyclase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017957564.1
protein-L-isoaspartate O-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_018860210.1
COORDINATES: similar to AA sequence:RefSeq:WP_018484727.1
COORDINATES: similar to AA sequence:RefSeq:WP_006203957.1
COORDINATES: similar to AA sequence:RefSeq:WP_012331454.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760024.1
COORDINATES: similar to AA sequence:RefSeq:WP_014329621.1
guanitoxin biosynthesis MBL fold metallo-hydrolase GntH
COORDINATES: similar to AA sequence:RefSeq:WP_003528419.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003528417.1
COORDINATES: similar to AA sequence:RefSeq:WP_012556012.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF022479.2
COORDINATES: similar to AA sequence:RefSeq:WP_018496206.1
GO:0004719 - protein-L-isoaspartate (D-aspartate) O-methyltransferase activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
protein-L-isoaspartate(D-aspartate) O-methyltransferase