Rhizobium indicum strain JKLM 12A2 plasmid pPR12A203, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
Genome sequences of pea root nodulating Rhizobium spp
Submitted (25-MAY-2020) National Centre for Microbial Resource, National Centre for Cell Science, First floor, Central Tower, Sai Trinity Building Garware Circle, Sutarwadi, Pune, Maharashtra 411021, India
Submitted (21-MAY-2019) National Centre for Microbial Resource, National Centre for Cell Science, First floor, Central Tower, Sai Trinity Building Garware Circle, Sutarwadi, Pune, Maharashtra 411021, India
REFSEQ INFORMATION: The reference sequence is identical to\nCP054024.1.\nBacteria and source DNA available from MCC 3961.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 18-MAY-2020\nAssembly Method :: Canu v. v. 2.0; bowtie2 v. v. 2.3.4.1\nAssembly Name :: tig\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 91.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/06/2023 04:11:01\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,301\nCDSs (total) :: 7,237\nGenes (coding) :: 7,056\nCDSs (with protein) :: 7,056\nGenes (RNA) :: 64\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 4\nPseudo Genes (total) :: 181\nCDSs (without protein) :: 181\nPseudo Genes (ambiguous residues) :: 0 of 181\nPseudo Genes (frameshifted) :: 108 of 181\nPseudo Genes (incomplete) :: 124 of 181\nPseudo Genes (internal stop) :: 18 of 181\nPseudo Genes (multiple problems) :: 63 of 181\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_017969082.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017969081.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969080.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_017958514.1
COORDINATES: similar to AA sequence:RefSeq:WP_007598406.1
COORDINATES: similar to AA sequence:RefSeq:WP_017996075.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017958508.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636251.1
COORDINATES: similar to AA sequence:RefSeq:WP_007538730.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760230.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003518564.1
COORDINATES: protein motif:HMM:NF019313.2
COORDINATES: similar to AA sequence:RefSeq:WP_009044744.1
COORDINATES: similar to AA sequence:RefSeq:WP_012452317.1
COORDINATES: similar to AA sequence:RefSeq:WP_003571565.1
COORDINATES: similar to AA sequence:RefSeq:WP_007293741.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF019334.2
GO:0004672 - protein kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025448.2
COORDINATES: similar to AA sequence:RefSeq:WP_015599734.1
COORDINATES: protein motif:HMM:NF012311.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012955.2
COORDINATES: protein motif:HMM:NF012590.2
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015668.2
COORDINATES: similar to AA sequence:RefSeq:WP_012760577.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020048036.1
GO:0008233 - peptidase activity [Evidence IEA]; GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003551129.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003910 - DNA ligase (ATP) activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017957069.1
COORDINATES: similar to AA sequence:RefSeq:WP_019565689.1
COORDINATES: similar to AA sequence:RefSeq:WP_004680467.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020048042.1
GO:0004789 - thiamine-phosphate diphosphorylase activity [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018068077.1
GO:1990107 - thiazole synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017958428.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018517747.1
GO:0016647 - oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018496056.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_018245240.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_020048047.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_020048048.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_020048049.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006557119.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654689.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011654690.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011053406.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018517303.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011654694.1
COORDINATES: similar to AA sequence:RefSeq:WP_014332657.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012904.2
GO:0016829 - lyase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020048052.1
COORDINATES: similar to AA sequence:RefSeq:WP_003571518.1
GO:0004412 - homoserine dehydrogenase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654699.1
COORDINATES: similar to AA sequence:RefSeq:WP_018484257.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018484256.1
GO:0019239 - deaminase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018497390.1
carbon-nitrogen hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020048057.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517312.1
GO:0030246 - carbohydrate binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654706.1
GO:0016301 - kinase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020048061.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654708.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517314.1
GO:0016624 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor [Evidence IEA]
alpha-ketoacid dehydrogenase subunit alpha/beta
COORDINATES: similar to AA sequence:RefSeq:WP_011654710.1
GO:0016853 - isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654711.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011654712.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011654713.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654714.1
COORDINATES: similar to AA sequence:RefSeq:WP_006309875.1
COORDINATES: similar to AA sequence:RefSeq:WP_017960761.1
COORDINATES: similar to AA sequence:RefSeq:WP_020050261.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020048071.1
COORDINATES: similar to AA sequence:RefSeq:WP_020050263.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017988549.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517322.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_012489415.1
COORDINATES: protein motif:HMM:NF024278.2
COORDINATES: protein motif:HMM:NF013862.2
GO:0006629 - lipid metabolic process [Evidence IEA]
patatin-like phospholipase family protein
COORDINATES: protein motif:HMM:NF024867.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012234.2
COORDINATES: similar to AA sequence:RefSeq:WP_003572688.1
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0001072 - transcription antitermination factor activity, RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012555661.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611229.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480553.1
COORDINATES: protein motif:HMM:NF020962.2
COORDINATES: similar to AA sequence:RefSeq:WP_018486494.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018517620.1
COORDINATES: similar to AA sequence:RefSeq:WP_011982997.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014528042.1
COORDINATES: similar to AA sequence:RefSeq:WP_003551160.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068071.1
COORDINATES: similar to AA sequence:RefSeq:WP_012881221.1
COORDINATES: similar to AA sequence:RefSeq:WP_003567609.1
sugar ABC transporter substrate-binding protein
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012512.2
GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]
GO:0006535 - cysteine biosynthetic process from serine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018485051.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997028.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496052.1
COORDINATES: similar to AA sequence:RefSeq:WP_003548532.1
COORDINATES: similar to AA sequence:RefSeq:WP_018485047.1
GO:0050114 - myo-inosose-2 dehydratase activity [Evidence IEA]
GO:0019310 - inositol catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018485046.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018485043.1
polysaccharide deacetylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018485042.1
COORDINATES: similar to AA sequence:RefSeq:WP_003530542.1
COORDINATES: similar to AA sequence:RefSeq:WP_018485040.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018485039.1
COORDINATES: similar to AA sequence:RefSeq:WP_018209622.1
COORDINATES: similar to AA sequence:RefSeq:WP_017271984.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018485036.1
GO:0003864 - 3-methyl-2-oxobutanoate hydroxymethyltransferase activity [Evidence IEA]
GO:0015940 - pantothenate biosynthetic process [Evidence IEA]
3-methyl-2-oxobutanoate hydroxymethyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_018246141.1
GO:0008864 - formyltetrahydrofolate deformylase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008040688.1
GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
tetrahydrofolate dehydrogenase/cyclohydrolase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011564696.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018485033.1
COORDINATES: protein motif:HMM:NF024799.2
COORDINATES: similar to AA sequence:RefSeq:WP_046066574.1
GO:0008483 - transaminase activity [Evidence IEA]
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_017267303.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014528478.1
gluconate 2-dehydrogenase subunit 3 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018485028.1
COORDINATES: protein motif:HMM:NF024834.2
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003549660.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
cytochrome-c oxidase, cbb3-type subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_016737483.1
cytochrome-c oxidase, cbb3-type subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_007795252.1
cbb3-type cytochrome c oxidase subunit 3
COORDINATES: similar to AA sequence:RefSeq:WP_020048100.1
cytochrome-c oxidase, cbb3-type subunit III
COORDINATES: similar to AA sequence:RefSeq:WP_003590892.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654242.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0008535 - respiratory chain complex IV assembly [Evidence IEA]
cytochrome c oxidase accessory protein CcoG
COORDINATES: similar to AA sequence:RefSeq:WP_011654243.1
COORDINATES: similar to AA sequence:RefSeq:WP_017996963.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549679.1
cbb3-type cytochrome oxidase assembly protein CcoS
COORDINATES: similar to AA sequence:RefSeq:WP_011650212.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014531773.1
COORDINATES: similar to AA sequence:RefSeq:WP_018484306.1
GO:0004073 - aspartate-semialdehyde dehydrogenase activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0008652 - amino acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018517733.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496049.1
GO:0009399 - nitrogen fixation [Evidence IEA]
nitrogenase iron-molybdenum cofactor biosynthesis protein NifN
COORDINATES: similar to AA sequence:RefSeq:WP_018496048.1
nitrogenase iron-molybdenum cofactor biosynthesis protein NifE
COORDINATES: similar to AA sequence:RefSeq:WP_006331758.1
GO:0016612 - molybdenum-iron nitrogenase complex [Evidence IEA]
GO:0016163 - nitrogenase activity [Evidence IEA]
nitrogenase molybdenum-iron protein subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_011654204.1
nitrogenase molybdenum-iron protein alpha chain
COORDINATES: similar to AA sequence:RefSeq:WP_017958664.1
GO:0016611 - iron-iron nitrogenase complex [Evidence IEA]; GO:0016612 - molybdenum-iron nitrogenase complex [Evidence IEA]; GO:0016613 - vanadium-iron nitrogenase complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611445.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014531109.1
COORDINATES: similar to AA sequence:RefSeq:WP_003532617.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003520460.1
COORDINATES: similar to AA sequence:RefSeq:WP_003533838.1
COORDINATES: similar to AA sequence:RefSeq:WP_020046834.1
COORDINATES: similar to AA sequence:RefSeq:WP_017968920.1
COORDINATES: similar to AA sequence:RefSeq:WP_017968921.1
poly(R)-hydroxyalkanoic acid synthase subunit PhaE
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007798929.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967426.1
COORDINATES: similar to AA sequence:RefSeq:WP_017968926.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003517310.1
N-acyl homoserine lactonase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020811856.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017968929.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_017968930.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654178.1
COORDINATES: similar to AA sequence:RefSeq:WP_012778801.1
GO:0015803 - branched-chain amino acid transport [Evidence IEA]
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_011654176.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654175.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654174.1
COORDINATES: similar to AA sequence:RefSeq:WP_018646108.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016736190.1
bifunctional folylpolyglutamate synthase/dihydrofolate synthase
COORDINATES: similar to AA sequence:RefSeq:WP_014766510.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020048109.1
ParB family; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011654541.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654168.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019205 - nucleobase-containing compound kinase activity [Evidence IEA]
GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654167.1
GO:0003987 - acetate-CoA ligase activity [Evidence IEA]
GO:0019427 - acetyl-CoA biosynthetic process from acetate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654166.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654165.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654153.1
COORDINATES: similar to AA sequence:RefSeq:WP_007609200.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654159.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654155.1
class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC
COORDINATES: similar to AA sequence:RefSeq:WP_011654154.1
COORDINATES: similar to AA sequence:RefSeq:WP_010914630.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017464161.1
GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014529193.1
COORDINATES: similar to AA sequence:RefSeq:WP_014529192.1
radical SAM family RiPP maturation amino acid epimerase
COORDINATES: similar to AA sequence:RefSeq:WP_011654150.1
RiPP maturation radical SAM C-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011654236.1
GO:0009055 - electron transfer activity [Evidence IEA]
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017958639.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
electron transfer flavoprotein subunit alpha/FixB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003532765.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970923.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958636.1
GO:0009399 - nitrogen fixation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
nif-specific transcriptional activator NifA
COORDINATES: similar to AA sequence:RefSeq:WP_003551818.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
nitrogenase cofactor biosynthesis protein NifB
COORDINATES: similar to AA sequence:RefSeq:WP_010875166.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958633.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958631.1
COORDINATES: similar to AA sequence:RefSeq:WP_032488436.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496573.1
nodulation factor ABC transporter ATP-binding protein NodI
COORDINATES: similar to AA sequence:RefSeq:WP_010967454.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018068350.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003551805.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517094.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958624.1
GO:0000036 - acyl carrier activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018517093.1
GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]
beta-ketoacyl-[acyl-carrier-protein] synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018496568.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967462.1
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: similar to AA sequence:RefSeq:WP_003551781.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654216.1
GO:0005509 - calcium ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018517088.1
SfnB family sulfur acquisition oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_003551771.1
COORDINATES: similar to AA sequence:RefSeq:WP_003551769.1
COORDINATES: similar to AA sequence:RefSeq:WP_002757630.1
COORDINATES: similar to AA sequence:RefSeq:WP_018484262.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958613.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048084.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068334.1
GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006529 - asparagine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611472.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958610.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_003549684.1
COORDINATES: similar to AA sequence:RefSeq:WP_011239024.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004119985.1
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_011749831.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase.; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_017958583.1
type IV secretion system lytic transglycosylase VirB1
COORDINATES: similar to AA sequence:RefSeq:WP_014528518.1
COORDINATES: similar to AA sequence:RefSeq:WP_010891501.1
COORDINATES: similar to AA sequence:RefSeq:WP_018009783.1
VirB4 family type IV secretion/conjugal transfer ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_017958579.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958578.1
COORDINATES: similar to AA sequence:RefSeq:WP_003568059.1
type IV secretion system lipoprotein VirB7
COORDINATES: similar to AA sequence:RefSeq:WP_019856525.1
COORDINATES: similar to AA sequence:RefSeq:WP_003537095.1
P-type conjugative transfer protein VirB9
COORDINATES: similar to AA sequence:RefSeq:WP_003581558.1
COORDINATES: similar to AA sequence:RefSeq:WP_003537101.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007635327.1
COORDINATES: similar to AA sequence:RefSeq:WP_003581561.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017958570.1
The ATPase VirD4 is a core component of the VirB/VirD4 form of type IV secretion systems (T4SS), also known as type IVa secretion systems; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011970865.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611444.1
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007792578.1
GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007792581.1
COORDINATES: protein motif:HMM:NF024852.2
COORDINATES: similar to AA sequence:RefSeq:WP_017958563.1
COORDINATES: similar to AA sequence:RefSeq:WP_003537746.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958560.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012559871.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969123.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958555.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958554.1
COORDINATES: similar to AA sequence:RefSeq:WP_020486314.1
COORDINATES: similar to AA sequence:RefSeq:WP_020486313.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969118.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969117.1
COORDINATES: similar to AA sequence:RefSeq:WP_012559863.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958548.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969114.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969113.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969111.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017969110.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958541.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958540.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_020486312.1
COORDINATES: similar to AA sequence:RefSeq:WP_012559853.1
COORDINATES: similar to AA sequence:RefSeq:WP_012559852.1
COORDINATES: similar to AA sequence:RefSeq:WP_012559851.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958535.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017969103.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958533.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_017958532.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958531.1
GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003585967.1
COORDINATES: similar to AA sequence:RefSeq:WP_007537323.1
COORDINATES: similar to AA sequence:RefSeq:WP_016735596.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969095.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958526.1
COORDINATES: similar to AA sequence:RefSeq:WP_018246445.1
COORDINATES: similar to AA sequence:RefSeq:WP_003594536.1
GO:0030261 - chromosome condensation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017969091.1
COORDINATES: similar to AA sequence:RefSeq:WP_003576948.1
COORDINATES: similar to AA sequence:RefSeq:WP_017992472.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_007634817.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_006699041.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958519.1
COORDINATES: similar to AA sequence:RefSeq:WP_012559835.1
COORDINATES: similar to AA sequence:RefSeq:WP_012559834.1