Paroceanicella profunda strain D4M1 plasmid pD4M1B, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Paroceanicella.
Genome sequence of Rhodobacteraceae bacterium D4M1
Submitted (02-JUN-2019) Shanghai Engineering Research Center of Hadal Scicence and Technology, College of Marine Sciences, Shanghai Ocean University, 999 Huchenghuan Road, Shanghai 201306, China
Submitted (15-MAY-2019) Shanghai Engineering Research Center of Hadal Scicence and Technology, College of Marine Sciences, Shanghai Ocean University, 999 Huchenghuan Road, Shanghai 201306, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP040820.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: MAY-2019\nAssembly Method :: Velvet v. 1.2.09\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 431.0x\nSequencing Technology :: PacBio RS; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/22/2023 16:18:37\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,850\nCDSs (total) :: 4,781\nGenes (coding) :: 4,721\nCDSs (with protein) :: 4,721\nGenes (RNA) :: 69\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 54\nncRNAs :: 3\nPseudo Genes (total) :: 60\nCDSs (without protein) :: 60\nPseudo Genes (ambiguous residues) :: 0 of 60\nPseudo Genes (frameshifted) :: 24 of 60\nPseudo Genes (incomplete) :: 38 of 60\nPseudo Genes (internal stop) :: 5 of 60\nPseudo Genes (multiple problems) :: 5 of 60\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_007010638.1
Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016534547.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009826361.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015343633.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_005015218.1
COORDINATES: similar to AA sequence:RefSeq:WP_007010640.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012649722.1
COORDINATES: similar to AA sequence:RefSeq:WP_014531981.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019561312.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007880846.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020723431.1
GO:0052717 - tRNA-specific adenosine-34 deaminase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018098200.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018098199.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_009829819.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008075386.1
COORDINATES: protein motif:HMM:NF024771.2
COORDINATES: similar to AA sequence:RefSeq:WP_014753226.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
amino acid ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF012738.2
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015837 - amine transport [Evidence IEA]
The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc.; The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013530398.1
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019996180.1
COORDINATES: similar to AA sequence:RefSeq:WP_019400569.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018302908.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013168334.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003528877.1
GO:0016853 - isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012092838.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0009045 - xylose isomerase activity [Evidence IEA]
GO:0042732 - D-xylose metabolic process [Evidence IEA]; GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018633999.1
LacI family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:NF016013.2
COORDINATES: similar to AA sequence:RefSeq:WP_015242062.1
COORDINATES: similar to AA sequence:RefSeq:WP_014332640.1
COORDINATES: similar to AA sequence:RefSeq:WP_008226970.1
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_003516981.1
COORDINATES: protein motif:HMM:NF018228.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013478080.1
COORDINATES: similar to AA sequence:RefSeq:WP_010544480.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003544754.1
DNA starvation/stationary phase protection protein
COORDINATES: protein motif:HMM:NF024242.2
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF017076.2
COORDINATES: protein motif:HMM:NF013594.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024376.2
TAXI family TRAP transporter solute-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011650866.1
COORDINATES: similar to AA sequence:RefSeq:WP_018270413.1
COORDINATES: similar to AA sequence:RefSeq:WP_019170138.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018389442.1
COORDINATES: similar to AA sequence:RefSeq:WP_011546829.1
limonene-1,2-epoxide hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007826377.1
NAD(P)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020012652.1
COORDINATES: similar to AA sequence:RefSeq:WP_012701648.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014189128.1
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339168.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018115440.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007684627.1
COORDINATES: similar to AA sequence:RefSeq:WP_018115934.1
COORDINATES: similar to AA sequence:RefSeq:WP_007091900.1
COORDINATES: similar to AA sequence:RefSeq:WP_008890674.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008890673.1
COORDINATES: similar to AA sequence:RefSeq:WP_008890672.1
C4-dicarboxylate TRAP transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF020039.2
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
SMP-30/gluconolactonase/LRE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017487045.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012331475.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]; GO:0042908 - xenobiotic transport [Evidence IEA]
multidrug efflux RND transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012640864.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013169170.1
COORDINATES: similar to AA sequence:RefSeq:WP_011339004.1
COORDINATES: similar to AA sequence:RefSeq:WP_006386121.1
COORDINATES: protein motif:HMM:NF012772.2
bifunctional diguanylate cyclase/phosphodiesterase
COORDINATES: similar to AA sequence:RefSeq:WP_011490690.1
COORDINATES: similar to AA sequence:RefSeq:WP_012590785.1
COORDINATES: similar to AA sequence:RefSeq:WP_007534851.1
COORDINATES: similar to AA sequence:RefSeq:WP_011336872.1
COORDINATES: similar to AA sequence:RefSeq:WP_011840272.1
GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014197441.1
COORDINATES: similar to AA sequence:RefSeq:WP_009564544.1
COORDINATES: similar to AA sequence:RefSeq:WP_002722384.1
COORDINATES: similar to AA sequence:RefSeq:WP_011840275.1
zinc-binding alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007438685.1
COORDINATES: similar to AA sequence:RefSeq:WP_007821351.1
COORDINATES: similar to AA sequence:RefSeq:WP_018301026.1
COORDINATES: similar to AA sequence:RefSeq:WP_005979048.1
aa3-type cytochrome c oxidase subunit IV
COORDINATES: similar to AA sequence:RefSeq:WP_007406272.1
COORDINATES: similar to AA sequence:RefSeq:WP_017480244.1
COORDINATES: similar to AA sequence:RefSeq:WP_013952577.1
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009175456.1
COORDINATES: similar to AA sequence:RefSeq:WP_019404792.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018919031.1
GO:0009486 - cytochrome bo3 ubiquinol oxidase activity [Evidence IEA]
GO:0015990 - electron transport coupled proton transport [Evidence IEA]
cytochrome o ubiquinol oxidase subunit IV
COORDINATES: similar to AA sequence:RefSeq:WP_019844652.1
cytochrome o ubiquinol oxidase subunit III
COORDINATES: similar to AA sequence:RefSeq:WP_006465766.1
cytochrome o ubiquinol oxidase subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_004568266.1
COORDINATES: similar to AA sequence:RefSeq:WP_013168336.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187291.1
COORDINATES: protein motif:HMM:NF012245.2
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: similar to AA sequence:RefSeq:WP_018064294.1
COORDINATES: similar to AA sequence:RefSeq:WP_018634335.1
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018000633.1
COORDINATES: similar to AA sequence:RefSeq:WP_008192843.1
COORDINATES: similar to AA sequence:RefSeq:WP_009562030.1
ParB N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF023398.2
COORDINATES: similar to AA sequence:RefSeq:WP_019654608.1
GO:0033573 - high-affinity iron permease complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0005381 - iron ion transmembrane transporter activity [Evidence IEA]
GO:0034755 - iron ion transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019171590.1
COORDINATES: similar to AA sequence:RefSeq:WP_004883840.1
GO:0020037 - heme binding [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]
GO:0033212 - iron import into cell [Evidence IEA]
iron uptake transporter deferrochelatase/peroxidase subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008127135.1
COORDINATES: similar to AA sequence:RefSeq:WP_012779092.1
DnaJ C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF024979.2
COORDINATES: protein motif:HMM:NF012791.2
GO:0032559 - adenyl ribonucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018327006.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012708115.1
COORDINATES: similar to AA sequence:RefSeq:WP_012091484.1
galactofuranose ABC transporter, galactofuranose-binding protein YtfQ
COORDINATES: similar to AA sequence:RefSeq:WP_003539588.1
COORDINATES: similar to AA sequence:RefSeq:WP_019950667.1
COORDINATES: similar to AA sequence:RefSeq:WP_007826686.1
galactofuranose ABC transporter, permease protein YjfF
COORDINATES: similar to AA sequence:RefSeq:WP_015007558.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
FadR/GntR family transcriptional regulator
COORDINATES: protein motif:HMM:NF015527.2
COORDINATES: protein motif:HMM:NF013786.2
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
4'-phosphopantetheinyl transferase superfamily protein
COORDINATES: similar to AA sequence:RefSeq:WP_012755975.1
GO:0009975 - cyclase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016849 - phosphorus-oxygen lyase activity [Evidence IEA]; GO:0032555 - purine ribonucleotide binding [Evidence IEA]
adenylate/guanylate cyclase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020091686.1
COORDINATES: similar to AA sequence:RefSeq:WP_019902927.1
GO:0030552 - cAMP binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016492402.1
homocysteine S-methyltransferase family protein
COORDINATES: protein motif:HMM:NF013706.2
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006937960.1
GO:0033739 - preQ1 synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010969508.1
GO:0016722 - oxidoreductase activity, acting on metal ions [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]; GO:0032363 - FMN catabolic process [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_007758781.1
COORDINATES: similar to AA sequence:RefSeq:WP_006764060.1
GO:0004160 - dihydroxy-acid dehydratase activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
GO:0009097 - isoleucine biosynthetic process [Evidence IEA]; GO:0009099 - valine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012336756.1
COORDINATES: similar to AA sequence:RefSeq:WP_007856079.1
aconitase X catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018905673.1
COORDINATES: similar to AA sequence:RefSeq:WP_009763706.1
COORDINATES: similar to AA sequence:RefSeq:WP_014996618.1
GO:0015556 - C4-dicarboxylate transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016200.2
COORDINATES: protein motif:HMM:NF015445.2
COORDINATES: protein motif:HMM:NF037472.2
COORDINATES: similar to AA sequence:RefSeq:WP_011902485.1
COORDINATES: similar to AA sequence:RefSeq:WP_008203659.1
GO:0008381 - mechanosensitive monoatomic ion channel activity [Evidence IEA]
mechanosensitive ion channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006203941.1
COORDINATES: similar to AA sequence:RefSeq:WP_018896914.1
COORDINATES: similar to AA sequence:RefSeq:WP_008282490.1
COORDINATES: similar to AA sequence:RefSeq:WP_008280469.1
COORDINATES: similar to AA sequence:RefSeq:WP_009825651.1
COORDINATES: similar to AA sequence:RefSeq:WP_006932389.1
GO:0004673 - protein histidine kinase activity [Evidence IEA]
HWE histidine kinase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014994018.1
COORDINATES: similar to AA sequence:RefSeq:WP_007010805.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020637261.1
D-2-hydroxyacid dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014763212.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018010934.1
COORDINATES: similar to AA sequence:RefSeq:WP_006938473.1
COORDINATES: similar to AA sequence:RefSeq:WP_006938472.1
COORDINATES: similar to AA sequence:RefSeq:WP_006727885.1
COORDINATES: similar to AA sequence:RefSeq:WP_006469171.1
COORDINATES: similar to AA sequence:RefSeq:WP_018329907.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_006226418.1
COORDINATES: similar to AA sequence:RefSeq:WP_007831257.1
COORDINATES: protein motif:HMM:NF024854.2
COORDINATES: similar to AA sequence:RefSeq:WP_020039403.1
COORDINATES: similar to AA sequence:RefSeq:WP_007690100.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: protein motif:HMM:NF012678.2
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004210744.1
GO:0004601 - peroxidase activity [Evidence IEA]; GO:0051920 - peroxiredoxin activity [Evidence IEA]
GO:0006972 - hyperosmotic response [Evidence IEA]; GO:0033194 - response to hydroperoxide [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010139181.1
esterase-like activity of phytase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007254596.1
GO:0005992 - trehalose biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00685.1
GO:0004805 - trehalose-phosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02401.1
GO:0047470 - (1,4)-alpha-D-glucan 1-alpha-D-glucosylmutase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011995459.1
GO:0004134 - 4-alpha-glucanotransferase activity [Evidence IEA]
GO:0005980 - glycogen catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019460321.1
GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
malto-oligosyltrehalose trehalohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_011995457.1
GO:0004133 - glycogen debranching enzyme activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014161522.1
GO:0003844 - 1,4-alpha-glucan branching enzyme activity [Evidence IEA]; GO:0043169 - cation binding [Evidence IEA]; GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO:0005978 - glycogen biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012653907.1
GO:0047471 - maltose alpha-D-glucosyltransferase activity [Evidence IEA]
GO:0005991 - trehalose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019015224.1
alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase
COORDINATES: protein motif:HMM:TIGR01730.1
COORDINATES: similar to AA sequence:RefSeq:WP_018326567.1
GO:0042908 - xenobiotic transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF019960.2
COORDINATES: similar to AA sequence:RefSeq:WP_009493427.1
COORDINATES: similar to AA sequence:RefSeq:WP_013034649.1
COORDINATES: protein motif:HMM:NF012488.2
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_003801924.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017964125.1
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: protein motif:HMM:NF025627.2
COORDINATES: similar to AA sequence:RefSeq:WP_019400775.1
COORDINATES: similar to AA sequence:RefSeq:WP_020399447.1
COORDINATES: similar to AA sequence:RefSeq:WP_005976831.1
COORDINATES: similar to AA sequence:RefSeq:WP_018303041.1
COORDINATES: similar to AA sequence:RefSeq:WP_008598902.1
COORDINATES: similar to AA sequence:RefSeq:WP_013392110.1
GO:0050385 - ureidoglycolate lyase activity [Evidence IEA]
GO:0000256 - allantoin catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013392109.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
polysaccharide deacetylase family protein
COORDINATES: protein motif:HMM:NF012707.2
COORDINATES: similar to AA sequence:RefSeq:WP_013690869.1
COORDINATES: similar to AA sequence:RefSeq:WP_013690868.1
COORDINATES: protein motif:HMM:NF013530.2
COORDINATES: similar to AA sequence:RefSeq:WP_014250213.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803062.1
COORDINATES: similar to AA sequence:RefSeq:WP_011910940.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011910939.1
type II toxin-antitoxin system HipA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_009570690.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_008886677.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012330044.1
COORDINATES: similar to AA sequence:RefSeq:WP_012652162.1
COORDINATES: similar to AA sequence:RefSeq:WP_018183869.1
COORDINATES: similar to AA sequence:RefSeq:WP_006205672.1
COORDINATES: similar to AA sequence:RefSeq:WP_018183867.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015008142.1
COORDINATES: similar to AA sequence:RefSeq:WP_008599249.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188996.1
TRAP transporter substrate-binding protein DctP
COORDINATES: similar to AA sequence:RefSeq:WP_008599245.1
COORDINATES: similar to AA sequence:RefSeq:WP_008837643.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016840003.1
COORDINATES: similar to AA sequence:RefSeq:WP_005978122.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017928256.1
indolepyruvate ferredoxin oxidoreductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011924027.1
COORDINATES: similar to AA sequence:RefSeq:WP_009756440.1
COORDINATES: similar to AA sequence:RefSeq:WP_017735397.1
COORDINATES: similar to AA sequence:RefSeq:WP_009504775.1
histidine kinase dimerization/phosphoacceptor domain -containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008228905.1
GO:0004450 - isocitrate dehydrogenase (NADP+) activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019367116.1
COORDINATES: similar to AA sequence:RefSeq:WP_006224912.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014526967.1