Paroceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Paroceanicella.
Genome sequence of Rhodobacteraceae bacterium D4M1
Submitted (02-JUN-2019) Shanghai Engineering Research Center of Hadal Scicence and Technology, College of Marine Sciences, Shanghai Ocean University, 999 Huchenghuan Road, Shanghai 201306, China
Submitted (15-MAY-2019) Shanghai Engineering Research Center of Hadal Scicence and Technology, College of Marine Sciences, Shanghai Ocean University, 999 Huchenghuan Road, Shanghai 201306, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP040819.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: MAY-2019\nAssembly Method :: Velvet v. 1.2.09\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 431.0x\nSequencing Technology :: PacBio RS; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/22/2023 16:18:37\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,850\nCDSs (total) :: 4,781\nGenes (coding) :: 4,721\nCDSs (with protein) :: 4,721\nGenes (RNA) :: 69\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 54\nncRNAs :: 3\nPseudo Genes (total) :: 60\nCDSs (without protein) :: 60\nPseudo Genes (ambiguous residues) :: 0 of 60\nPseudo Genes (frameshifted) :: 24 of 60\nPseudo Genes (incomplete) :: 38 of 60\nPseudo Genes (internal stop) :: 5 of 60\nPseudo Genes (multiple problems) :: 5 of 60\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_007799150.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018238946.1
COORDINATES: similar to AA sequence:RefSeq:WP_007876256.1
GO:0008674 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase activity [Evidence IEA]
GO:0034194 - D-galactonate catabolic process [Evidence IEA]
2-dehydro-3-deoxy-6-phosphogalactonate aldolase
COORDINATES: similar to AA sequence:RefSeq:WP_007973324.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016646 - oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018067366.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017928969.1
COORDINATES: similar to AA sequence:RefSeq:WP_010142420.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009755998.1
tripartite tricarboxylate transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009755999.1
GO:0005215 - transporter activity [Evidence IEA]
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007426047.1
tripartite tricarboxylate transporter permease
COORDINATES: protein motif:HMM:NF017833.2
COORDINATES: similar to AA sequence:RefSeq:WP_019963760.1
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007697962.1
COORDINATES: protein motif:HMM:TIGR00254.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0005525 - GTP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003532668.1
COORDINATES: protein motif:HMM:NF013397.2
GO:0015499 - formate transmembrane transporter activity [Evidence IEA]
GO:0015724 - formate transport [Evidence IEA]
formate/nitrite transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019053316.1
GO:0009027 - tartrate dehydrogenase activity [Evidence IEA]
GO:0046395 - carboxylic acid catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF037026.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014567.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_007802619.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007802628.1
COORDINATES: similar to AA sequence:RefSeq:WP_013963572.1
quinoprotein dehydrogenase-associated SoxYZ-like carrier
COORDINATES: similar to AA sequence:RefSeq:WP_011748646.1
quinoprotein relay system zinc metallohydrolase 2
COORDINATES: similar to AA sequence:RefSeq:WP_009824260.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008229542.1
COORDINATES: protein motif:HMM:NF023069.2
DnaA N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002436268.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0016151 - nickel cation binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]; GO:0010045 - response to nickel cation [Evidence IEA]
nickel-responsive transcriptional regulator NikR
COORDINATES: similar to AA sequence:RefSeq:WP_008872904.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_009542917.1
tellurite resistance TerB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008891978.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009570685.1
COORDINATES: similar to AA sequence:RefSeq:WP_009570686.1
COORDINATES: similar to AA sequence:RefSeq:WP_008561105.1
COORDINATES: similar to AA sequence:RefSeq:WP_008942867.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018700133.1
COORDINATES: protein motif:HMM:NF024039.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011567062.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004189949.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008229625.1
COORDINATES: similar to AA sequence:RefSeq:WP_011567058.1
COORDINATES: similar to AA sequence:RefSeq:WP_010392178.1
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008506759.1
GO:0004789 - thiamine-phosphate diphosphorylase activity [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011537258.1
GO:1990107 - thiazole synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010501562.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007813169.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_019963999.1
COORDINATES: protein motif:HMM:NF012371.2
GO:0016787 - hydrolase activity [Evidence IEA]
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018697830.1
COORDINATES: similar to AA sequence:RefSeq:WP_015459087.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008835899.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016701.2
GO:0016846 - carbon-sulfur lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008994305.1
GO:0052621 - diguanylate cyclase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
sensor domain-containing diguanylate cyclase
COORDINATES: protein motif:HMM:NF019322.2
COORDINATES: protein motif:HMM:NF012589.2
COORDINATES: protein motif:HMM:TIGR00259.1
COORDINATES: protein motif:HMM:NF024950.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_013396456.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006222443.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019402708.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012093192.1
hydrogen peroxide-inducible genes activator
COORDINATES: similar to AA sequence:RefSeq:WP_014283148.1
GO:0008379 - thioredoxin peroxidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019402474.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003590130.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007537542.1
COORDINATES: similar to AA sequence:RefSeq:WP_003590132.1
COORDINATES: similar to AA sequence:RefSeq:WP_012978022.1
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: protein motif:HMM:NF019998.2
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019955495.1
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: similar to AA sequence:RefSeq:WP_003813978.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012977435.1
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009762418.1
COORDINATES: similar to AA sequence:RefSeq:WP_007671290.1
COORDINATES: protein motif:HMM:NF012706.2
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007678173.1
COORDINATES: similar to AA sequence:RefSeq:WP_019016235.1
COORDINATES: similar to AA sequence:RefSeq:WP_019016234.1
COORDINATES: similar to AA sequence:RefSeq:WP_007678167.1
COORDINATES: similar to AA sequence:RefSeq:WP_019016239.1
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024854.2
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008229445.1
GO:0004411 - homogentisate 1,2-dioxygenase activity [Evidence IEA]
GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO:0006572 - tyrosine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010437562.1
GO:0004334 - fumarylacetoacetase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008598312.1
COORDINATES: similar to AA sequence:RefSeq:WP_010437560.1
COORDINATES: similar to AA sequence:RefSeq:WP_007010126.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803849.1
COORDINATES: similar to AA sequence:RefSeq:WP_019403157.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009504271.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008197376.1
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013812586.1
GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010967209.1
COORDINATES: similar to AA sequence:RefSeq:WP_014743954.1
COORDINATES: similar to AA sequence:RefSeq:WP_012092973.1
COORDINATES: similar to AA sequence:RefSeq:WP_014743952.1
COORDINATES: similar to AA sequence:RefSeq:WP_012092971.1
COORDINATES: similar to AA sequence:RefSeq:WP_019858835.1
PQQ-binding-like beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189273.1
GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: protein motif:HMM:NF027567.2
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012976962.1
COORDINATES: similar to AA sequence:RefSeq:WP_012455985.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]; GO:0046914 - transition metal ion binding [Evidence IEA]
manganese-binding transcriptional regulator MntR
COORDINATES: similar to AA sequence:RefSeq:WP_008382586.1
COORDINATES: similar to AA sequence:RefSeq:WP_012454309.1
organic hydroperoxide resistance protein
COORDINATES: similar to AA sequence:RefSeq:WP_019195957.1
COORDINATES: similar to AA sequence:RefSeq:WP_014751274.1
GO:0051907 - S-(hydroxymethyl)glutathione synthase activity [Evidence IEA]
GO:0046292 - formaldehyde metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF020084.2
FIST N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012092100.1
biotin/lipoate A/B protein ligase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008334100.1
NahK/ErcS family hybrid sensor histidine kinase/response regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008334096.1
COORDINATES: similar to AA sequence:RefSeq:WP_013067371.1
COORDINATES: similar to AA sequence:RefSeq:WP_013651748.1
COORDINATES: similar to AA sequence:RefSeq:WP_005864203.1
COORDINATES: protein motif:HMM:NF009972.0
COORDINATES: protein motif:HMM:TIGR00229.1
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011746380.1
COORDINATES: similar to AA sequence:RefSeq:WP_013651774.1
COORDINATES: similar to AA sequence:RefSeq:WP_017929851.1
COORDINATES: similar to AA sequence:RefSeq:WP_008559499.1
GO:0006749 - glutathione metabolic process [Evidence IEA]
glutathione-dependent disulfide-bond oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_004731652.1
glutathione S-transferase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007825998.1
COORDINATES: similar to AA sequence:RefSeq:WP_018634200.1
COORDINATES: similar to AA sequence:RefSeq:WP_008029862.1
YVTN family beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_009817327.1
COORDINATES: similar to AA sequence:RefSeq:WP_018098064.1
COORDINATES: similar to AA sequence:RefSeq:WP_013651768.1
COORDINATES: similar to AA sequence:RefSeq:WP_018271549.1
beta-propeller fold lactonase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012335421.1
PQQ-dependent catabolism-associated CXXCW motif protein
COORDINATES: similar to AA sequence:RefSeq:WP_013963564.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018633493.1
c-type cytochrome, methanol metabolism-related
COORDINATES: similar to AA sequence:RefSeq:WP_009817311.1
methanol/ethanol family PQQ-dependent dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_005863970.1
COORDINATES: similar to AA sequence:RefSeq:WP_008887450.1
GO:0018738 - S-formylglutathione hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011453170.1
GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity [Evidence IEA]
GO:0006113 - fermentation [Evidence IEA]; GO:0009404 - toxin metabolic process [Evidence IEA]
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_008887429.1
COORDINATES: similar to AA sequence:RefSeq:WP_009564375.1
COORDINATES: protein motif:HMM:NF013283.2
GO:0019867 - outer membrane [Evidence IEA]
COORDINATES: protein motif:HMM:NF016260.2
GO:0009306 - protein secretion [Evidence IEA]
translocation/assembly module TamB domain-containing protein
COORDINATES: protein motif:HMM:NF017088.2
GO:0042314 - bacteriochlorophyll binding [Evidence IEA]
GO:0019684 - photosynthesis, light reaction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019018959.1
COORDINATES: similar to AA sequence:RefSeq:WP_006338819.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009450210.1
COORDINATES: protein motif:HMM:NF018024.2
COORDINATES: similar to AA sequence:RefSeq:WP_012249241.1
COORDINATES: protein motif:HMM:NF015431.2
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013088.2
COORDINATES: protein motif:HMM:NF014081.2
COORDINATES: similar to AA sequence:RefSeq:WP_009812916.1
COORDINATES: similar to AA sequence:RefSeq:WP_008944149.1
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: similar to AA sequence:RefSeq:WP_009812913.1
COORDINATES: similar to AA sequence:RefSeq:WP_011570203.1
GO:0015205 - nucleobase transmembrane transporter activity [Evidence IEA]
nucleobase:cation symporter-2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015338742.1
COORDINATES: similar to AA sequence:RefSeq:WP_007761612.1
COORDINATES: similar to AA sequence:RefSeq:WP_009756465.1
COORDINATES: similar to AA sequence:RefSeq:WP_011582130.1
GO:0015556 - C4-dicarboxylate transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009756467.1
COORDINATES: similar to AA sequence:RefSeq:WP_010140929.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010140928.1
COORDINATES: similar to AA sequence:RefSeq:WP_018698472.1
COORDINATES: similar to AA sequence:RefSeq:WP_009566101.1
COORDINATES: similar to AA sequence:RefSeq:WP_012747079.1
COORDINATES: similar to AA sequence:RefSeq:WP_018698469.1
GO:0000287 - magnesium ion binding [Evidence IEA]
RuBisCO large subunit C-terminal-like domain-containing protein
COORDINATES: protein motif:HMM:NF018682.2
four-carbon acid sugar kinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007040384.1
COORDINATES: similar to AA sequence:RefSeq:WP_013652190.1
COORDINATES: similar to AA sequence:RefSeq:WP_002723799.1
carboxypeptidase-like regulatory domain-containing protein
COORDINATES: protein motif:HMM:NF014420.2
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0032778 - P-type cobalt transporter activity [Evidence IEA]
GO:0006824 - cobalt ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008622264.1
COORDINATES: similar to AA sequence:RefSeq:WP_008890887.1
COORDINATES: similar to AA sequence:RefSeq:WP_012333423.1
COORDINATES: similar to AA sequence:RefSeq:WP_009805914.1
GO:0015803 - branched-chain amino acid transport [Evidence IEA]
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_010139768.1
COORDINATES: similar to AA sequence:RefSeq:WP_018260107.1
COORDINATES: similar to AA sequence:RefSeq:WP_012093337.1
COORDINATES: similar to AA sequence:RefSeq:WP_012333418.1
COORDINATES: similar to AA sequence:RefSeq:WP_018270782.1
COORDINATES: similar to AA sequence:RefSeq:WP_010627199.1
COORDINATES: similar to AA sequence:RefSeq:WP_017928460.1
COORDINATES: similar to AA sequence:RefSeq:WP_006204349.1
COORDINATES: similar to AA sequence:RefSeq:WP_013652603.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011751308.1
COORDINATES: similar to AA sequence:RefSeq:WP_011242182.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396983.1
COORDINATES: similar to AA sequence:RefSeq:WP_013652599.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]; GO:0003959 - NADPH dehydrogenase activity [Evidence IEA]
bifunctional salicylyl-CoA 5-hydroxylase/oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_019436608.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396978.1
GO:0070403 - NAD+ binding [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014188828.1
COORDINATES: protein motif:HMM:NF013188.2
COORDINATES: similar to AA sequence:RefSeq:WP_013845873.1
COORDINATES: similar to AA sequence:RefSeq:WP_018064856.1
COORDINATES: protein motif:HMM:NF021364.2
COORDINATES: similar to AA sequence:RefSeq:WP_012333516.1
COORDINATES: similar to AA sequence:RefSeq:WP_008595981.1
COORDINATES: similar to AA sequence:RefSeq:WP_012494902.1
COORDINATES: similar to AA sequence:RefSeq:WP_008227979.1
COORDINATES: similar to AA sequence:RefSeq:WP_006611166.1
COORDINATES: similar to AA sequence:RefSeq:WP_008139997.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824267.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011046958.1
COORDINATES: protein motif:HMM:NF017517.2
dual specificity protein phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016747761.1
COORDINATES: similar to AA sequence:RefSeq:WP_009572143.1
L-2-amino-thiazoline-4-carboxylic acid hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_008961490.1
COORDINATES: similar to AA sequence:RefSeq:WP_007005270.1
COORDINATES: protein motif:HMM:NF018979.2
COORDINATES: similar to AA sequence:RefSeq:WP_007593564.1
GO:0042597 - periplasmic space [Evidence IEA]
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007117478.1
COORDINATES: similar to AA sequence:RefSeq:WP_007088625.1
COORDINATES: similar to AA sequence:RefSeq:WP_012427422.1
GO:0000275 - mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) [Evidence IEA]; GO:0045262 - plasma membrane proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]; GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]
GO:0015986 - proton motive force-driven ATP synthesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008883830.1
COORDINATES: similar to AA sequence:RefSeq:WP_011836234.1
COORDINATES: similar to AA sequence:RefSeq:WP_010110454.1
COORDINATES: similar to AA sequence:RefSeq:WP_017461026.1
COORDINATES: similar to AA sequence:RefSeq:WP_007826055.1
COORDINATES: similar to AA sequence:RefSeq:WP_008886342.1
COORDINATES: similar to AA sequence:RefSeq:WP_004552102.1
GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008884870.1
GO:0042777 - proton motive force-driven plasma membrane ATP synthesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009465253.1
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02122.1
TAXI family TRAP transporter solute-binding subunit
COORDINATES: protein motif:HMM:TIGR02123.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003610787.1
COORDINATES: similar to AA sequence:RefSeq:WP_011454594.1
COORDINATES: similar to AA sequence:RefSeq:WP_006335605.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015499550.1
COORDINATES: similar to AA sequence:RefSeq:WP_008193279.1
COORDINATES: similar to AA sequence:RefSeq:WP_015499552.1
COORDINATES: similar to AA sequence:RefSeq:WP_019954373.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012178051.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]; GO:0008753 - NADPH dehydrogenase (quinone) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019954371.1
COORDINATES: similar to AA sequence:RefSeq:WP_015499555.1
2-oxoglutarate and iron-dependent oxygenase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008548792.1
COORDINATES: similar to AA sequence:RefSeq:WP_007601762.1
class II aldolase/adducin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009756579.1
COORDINATES: similar to AA sequence:RefSeq:WP_014747304.1
GO:0004420 - hydroxymethylglutaryl-CoA reductase (NADPH) activity [Evidence IEA]
GO:0016054 - organic acid catabolic process [Evidence IEA]
hydroxymethylglutaryl-CoA reductase, degradative
COORDINATES: similar to AA sequence:RefSeq:WP_011241943.1
TRAP transporter substrate-binding protein DctP
COORDINATES: similar to AA sequence:RefSeq:WP_009804487.1
COORDINATES: similar to AA sequence:RefSeq:WP_009520211.1
COORDINATES: similar to AA sequence:RefSeq:WP_018485567.1
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_013396389.1
fumarylacetoacetate hydrolase family protein
COORDINATES: protein motif:HMM:NF015445.2
COORDINATES: protein motif:HMM:NF016200.2
COORDINATES: similar to AA sequence:RefSeq:WP_011483131.1
COORDINATES: similar to AA sequence:RefSeq:WP_018430741.1
COORDINATES: similar to AA sequence:RefSeq:WP_018699797.1
COORDINATES: similar to AA sequence:RefSeq:WP_019400159.1
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012093680.1
GO:0009436 - glyoxylate catabolic process [Evidence IEA]; GO:0071704 - organic substance metabolic process [Evidence IEA]
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008597796.1
GO:0000334 - 3-hydroxyanthranilate 3,4-dioxygenase activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019400156.1
COORDINATES: similar to AA sequence:RefSeq:WP_006392582.1
COORDINATES: similar to AA sequence:RefSeq:WP_014753202.1
COORDINATES: similar to AA sequence:RefSeq:WP_008597785.1
COORDINATES: similar to AA sequence:RefSeq:WP_012093676.1
COORDINATES: similar to AA sequence:RefSeq:WP_012093674.1
COORDINATES: similar to AA sequence:RefSeq:WP_010442014.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007796201.1
gamma-glutamyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009826300.1
COORDINATES: similar to AA sequence:RefSeq:WP_020185674.1
COORDINATES: similar to AA sequence:RefSeq:WP_008884206.1
COORDINATES: similar to AA sequence:RefSeq:WP_009505760.1
COORDINATES: similar to AA sequence:RefSeq:WP_009826304.1
COORDINATES: similar to AA sequence:RefSeq:WP_008886001.1
COORDINATES: similar to AA sequence:RefSeq:WP_018115166.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0000976 - transcription cis-regulatory region binding [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]; GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010975634.1
COORDINATES: similar to AA sequence:RefSeq:WP_019566933.1
COORDINATES: similar to AA sequence:RefSeq:WP_019963699.1
COORDINATES: similar to AA sequence:RefSeq:WP_006725465.1
COORDINATES: similar to AA sequence:RefSeq:WP_003534068.1
adenine deaminase C-terminal domain-containing protein
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018690443.1
COORDINATES: similar to AA sequence:RefSeq:WP_014129410.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014129412.1
COORDINATES: similar to AA sequence:RefSeq:WP_015319285.1
COORDINATES: similar to AA sequence:RefSeq:WP_008890509.1
COORDINATES: similar to AA sequence:RefSeq:WP_007255162.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011580187.1
COORDINATES: similar to AA sequence:RefSeq:WP_008834351.1
SMP-30/gluconolactonase/LRE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010516056.1
COORDINATES: similar to AA sequence:RefSeq:WP_018902024.1
COORDINATES: similar to AA sequence:RefSeq:WP_018390217.1
COORDINATES: similar to AA sequence:RefSeq:WP_013500523.1
GO:0016790 - thiolester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019645227.1
GO:0004370 - glycerol kinase activity [Evidence IEA]
GO:0006071 - glycerol metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019965034.1
COORDINATES: similar to AA sequence:RefSeq:WP_002719814.1
COORDINATES: similar to AA sequence:RefSeq:WP_007427849.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009816390.1
COORDINATES: similar to AA sequence:RefSeq:WP_007121389.1
COORDINATES: similar to AA sequence:RefSeq:WP_007802789.1
COORDINATES: similar to AA sequence:RefSeq:WP_019965040.1
GO:0009331 - glycerol-3-phosphate dehydrogenase complex [Evidence IEA]
GO:0004368 - glycerol-3-phosphate dehydrogenase (quinone) activity [Evidence IEA]
GO:0006072 - glycerol-3-phosphate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007690094.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: protein motif:HMM:NF012772.2
GGDEF domain-containing phosphodiesterase
COORDINATES: similar to AA sequence:RefSeq:WP_009813109.1
COORDINATES: similar to AA sequence:RefSeq:WP_008885348.1
COORDINATES: similar to AA sequence:RefSeq:WP_007801608.1
COORDINATES: similar to AA sequence:RefSeq:WP_009571983.1
COORDINATES: similar to AA sequence:RefSeq:WP_007801612.1
COORDINATES: similar to AA sequence:RefSeq:WP_009571981.1
COORDINATES: similar to AA sequence:RefSeq:WP_008883772.1
COORDINATES: similar to AA sequence:RefSeq:WP_005981834.1
COORDINATES: similar to AA sequence:RefSeq:WP_013502409.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012320172.1
COORDINATES: similar to AA sequence:RefSeq:WP_006337242.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]; GO:0042908 - xenobiotic transport [Evidence IEA]
multidrug efflux RND transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018481730.1
COORDINATES: similar to AA sequence:RefSeq:WP_006313332.1
GO:0015250 - water channel activity [Evidence IEA]
GO:0006833 - water transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007820580.1
COORDINATES: similar to AA sequence:RefSeq:WP_010398483.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003910 - DNA ligase (ATP) activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
cisplatin damage response ATP-dependent DNA ligase
COORDINATES: similar to AA sequence:RefSeq:WP_012483100.1
ligase-associated DNA damage response exonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_018633631.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001467.1
COORDINATES: similar to AA sequence:RefSeq:WP_011747205.1
iron ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_020043149.1
COORDINATES: similar to AA sequence:RefSeq:WP_008030207.1
COORDINATES: similar to AA sequence:RefSeq:WP_009817118.1
GO:0008783 - agmatinase activity [Evidence IEA]
GO:0008295 - spermidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014745010.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005862114.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001433.1
COORDINATES: similar to AA sequence:RefSeq:WP_005862122.1
COORDINATES: similar to AA sequence:RefSeq:WP_005862124.1
COORDINATES: similar to AA sequence:RefSeq:WP_018485768.1
COORDINATES: similar to AA sequence:RefSeq:WP_003551227.1
GO:0009055 - electron transfer activity [Evidence IEA]
cytochrome b/b6 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017959469.1
COORDINATES: similar to AA sequence:RefSeq:WP_017959470.1
COORDINATES: similar to AA sequence:RefSeq:WP_003551236.1
COORDINATES: similar to AA sequence:RefSeq:WP_018262234.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018114674.1
COORDINATES: similar to AA sequence:RefSeq:WP_006992274.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003929947.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008533727.1
COORDINATES: similar to AA sequence:RefSeq:WP_008533728.1
COORDINATES: similar to AA sequence:RefSeq:WP_003575372.1
COORDINATES: similar to AA sequence:RefSeq:WP_003594738.1
COORDINATES: similar to AA sequence:RefSeq:WP_011749751.1
COORDINATES: similar to AA sequence:RefSeq:WP_017957005.1
COORDINATES: similar to AA sequence:RefSeq:WP_018098286.1
COORDINATES: similar to AA sequence:RefSeq:WP_007788672.1
COORDINATES: similar to AA sequence:RefSeq:WP_018390227.1
COORDINATES: similar to AA sequence:RefSeq:WP_016809974.1
COORDINATES: similar to AA sequence:RefSeq:WP_008528814.1
COORDINATES: similar to AA sequence:RefSeq:WP_008528813.1
COORDINATES: similar to AA sequence:RefSeq:WP_020094818.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612002.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018066823.1
COORDINATES: similar to AA sequence:RefSeq:WP_010161432.1
COORDINATES: similar to AA sequence:RefSeq:WP_017993293.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003546221.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611339.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013661.2
GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009803438.1
COORDINATES: similar to AA sequence:RefSeq:WP_014881649.1
Lrp/AsnC ligand binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019014263.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_018952885.1
homocysteine S-methyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002713998.1
COORDINATES: protein motif:HMM:NF014664.2
COORDINATES: similar to AA sequence:RefSeq:WP_005981062.1
GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
adenosylcobalamin-dependent ribonucleoside-diphosphate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_011339404.1
COORDINATES: similar to AA sequence:RefSeq:WP_013066541.1
GO:0003879 - ATP phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009806082.1
ATP phosphoribosyltransferase regulatory subunit
COORDINATES: similar to AA sequence:RefSeq:WP_017929311.1
GO:0004821 - histidine-tRNA ligase activity [Evidence IEA]
GO:0006427 - histidyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018995759.1
COORDINATES: similar to AA sequence:RefSeq:WP_018063505.1
COORDINATES: similar to AA sequence:RefSeq:WP_009816273.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011505378.1
GO:0019628 - urate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012179619.1
GO:0004854 - xanthine dehydrogenase activity [Evidence IEA]
GO:0009115 - xanthine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013078247.1
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]; GO:0004854 - xanthine dehydrogenase activity [Evidence IEA]
xanthine dehydrogenase molybdopterin binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_002724477.1
GO:0065003 - protein-containing complex assembly [Evidence IEA]; GO:0009115 - xanthine catabolic process [Evidence IEA]
xanthine dehydrogenase accessory protein XdhC
COORDINATES: similar to AA sequence:RefSeq:WP_011537844.1
COORDINATES: similar to AA sequence:RefSeq:WP_014875710.1
COORDINATES: similar to AA sequence:RefSeq:WP_015493972.1
COORDINATES: similar to AA sequence:RefSeq:WP_007117878.1
BMP family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015594584.1
COORDINATES: similar to AA sequence:RefSeq:WP_007253580.1
GO:0008892 - guanine deaminase activity [Evidence IEA]
GO:0006147 - guanine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006937585.1
COORDINATES: protein motif:HMM:NF013646.2
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: similar to AA sequence:RefSeq:WP_019566554.1
GO:0009982 - pseudouridine synthase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO:0001522 - pseudouridine synthesis [Evidence IEA]; GO:0009451 - RNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007088854.1
COORDINATES: similar to AA sequence:RefSeq:WP_014198005.1
2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase
COORDINATES: similar to AA sequence:RefSeq:WP_005981886.1
GO:0004845 - uracil phosphoribosyltransferase activity [Evidence IEA]
GO:0009116 - nucleoside metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010140898.1
GO:0004000 - adenosine deaminase activity [Evidence IEA]
GO:0043101 - purine-containing compound salvage [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013066191.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0008973 - phosphopentomutase activity [Evidence IEA]
GO:0043094 - cellular metabolic compound salvage [Evidence IEA]; GO:0009117 - nucleotide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018633529.1
GO:0009032 - thymidine phosphorylase activity [Evidence IEA]
GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009464923.1
GO:0004139 - deoxyribose-phosphate aldolase activity [Evidence IEA]
GO:0009264 - deoxyribonucleotide catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013068933.1
GO:0004731 - purine-nucleoside phosphorylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015501118.1
GO:0004126 - cytidine deaminase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0009972 - cytidine deamination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011582963.1
COORDINATES: similar to AA sequence:RefSeq:WP_003536144.1
COORDINATES: similar to AA sequence:RefSeq:WP_014766560.1
COORDINATES: similar to AA sequence:RefSeq:WP_007089872.1
COORDINATES: similar to AA sequence:RefSeq:WP_013654422.1
COORDINATES: similar to AA sequence:RefSeq:WP_012177501.1
sigma-54 dependent transcriptional regulator
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF012722.2
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]
histidine kinase dimerization/phospho-acceptor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020038435.1
COORDINATES: similar to AA sequence:RefSeq:WP_007426298.1
COORDINATES: similar to AA sequence:RefSeq:WP_011749917.1
GO:0031419 - cobalamin binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004494 - methylmalonyl-CoA mutase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF020459.2
COORDINATES: similar to AA sequence:RefSeq:WP_011909262.1
acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_002730077.1
COORDINATES: similar to AA sequence:RefSeq:WP_008233733.1
COORDINATES: similar to AA sequence:RefSeq:WP_009771635.1
COORDINATES: similar to AA sequence:RefSeq:WP_014201081.1
GO:0006353 - DNA-templated transcription termination [Evidence IEA]
Rho termination factor N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006174313.1
GO:0016874 - ligase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012177393.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015496175.1
COORDINATES: similar to AA sequence:RefSeq:WP_012643505.1
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013068793.1
GO:0004795 - threonine synthase activity [Evidence IEA]
GO:0009088 - threonine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010439425.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]; GO:0019346 - transsulfuration [Evidence IEA]
O-acetylhomoserine aminocarboxypropyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_013068797.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014876522.1
GO:0008997 - ribonuclease R activity [Evidence IEA]
GO:0006401 - RNA catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020056928.1
COORDINATES: protein motif:HMM:NF012894.2
GO:0042834 - peptidoglycan binding [Evidence IEA]; GO:0015288 - porin activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007797385.1
GO:0008412 - 4-hydroxybenzoate octaprenyltransferase activity [Evidence IEA]
GO:0006744 - ubiquinone biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011841811.1
GO:0008168 - methyltransferase activity [Evidence IEA]
GO:0006364 - rRNA processing [Evidence IEA]
16S rRNA (uracil(1498)-N(3))-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008227367.1
GO:0004357 - glutamate-cysteine ligase activity [Evidence IEA]
GO:0006750 - glutathione biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010113471.1
COORDINATES: similar to AA sequence:RefSeq:WP_009812651.1
GO:0008237 - metallopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020057403.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009807379.1
GO:0008495 - protoheme IX farnesyltransferase activity [Evidence IEA]
GO:0006783 - heme biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007205634.1
COORDINATES: similar to AA sequence:RefSeq:WP_011907672.1
COORDINATES: similar to AA sequence:RefSeq:WP_008886237.1
COORDINATES: similar to AA sequence:RefSeq:WP_005851696.1
COORDINATES: protein motif:HMM:NF016300.2
The SIMPL domain is named for its presence in mouse protein SIMPL (signalling molecule that associates with mouse pelle-like kinase). Bacterial member BP26, from Brucella, was shown to assemble into a channel-like structure, while YggE from E. coli has been associated with resistance to oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024214.2
molybdopterin-binding/glycosyltransferase family 2 protein
COORDINATES: similar to AA sequence:RefSeq:WP_012179018.1
COORDINATES: similar to AA sequence:RefSeq:WP_013962344.1
COORDINATES: protein motif:HMM:NF025445.2
COORDINATES: similar to AA sequence:RefSeq:WP_010439707.1
COORDINATES: similar to AA sequence:RefSeq:WP_007427071.1
GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IEA]
GO:0015693 - magnesium ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF024824.2
tetratricopeptide repeat-containing glycosyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007255871.1
COORDINATES: similar to AA sequence:RefSeq:WP_004617759.1
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_007607909.1
COORDINATES: similar to AA sequence:RefSeq:WP_005981643.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0008172 - S-methyltransferase activity [Evidence IEA]; GO:0016782 - transferase activity, transferring sulphur-containing groups [Evidence IEA]
GO:0018339 - peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid [Evidence IEA]
30S ribosomal protein S12 methylthiotransferase RimO
COORDINATES: similar to AA sequence:RefSeq:WP_009491563.1
COORDINATES: similar to AA sequence:RefSeq:WP_002691074.1
GO:0004318 - enoyl-[acyl-carrier-protein] reductase (NADH) activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012779097.1
bifunctional enoyl-CoA hydratase/phosphate acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_004299299.1
GO:0008776 - acetate kinase activity [Evidence IEA]
GO:0006083 - acetate metabolic process [Evidence IEA]; GO:0006113 - fermentation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007670124.1
COORDINATES: similar to AA sequence:RefSeq:WP_020188022.1
COORDINATES: similar to AA sequence:RefSeq:WP_012708576.1
COORDINATES: similar to AA sequence:RefSeq:WP_018184511.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008974583.1
COORDINATES: similar to AA sequence:RefSeq:WP_016846176.1
GO:0006629 - lipid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007605431.1
two-component regulator propeller domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011087542.1
COORDINATES: similar to AA sequence:RefSeq:WP_004577346.1
GO:0000156 - phosphorelay response regulator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015663797.1
COORDINATES: protein motif:HMM:NF024714.2
COORDINATES: similar to AA sequence:RefSeq:WP_018045680.1
COORDINATES: similar to AA sequence:RefSeq:WP_018260827.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976318.1
COORDINATES: similar to AA sequence:RefSeq:WP_013168547.1
COORDINATES: similar to AA sequence:RefSeq:WP_007537003.1
COORDINATES: similar to AA sequence:RefSeq:WP_006699253.1
GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0006113 - fermentation [Evidence IEA]
zinc-binding alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018429630.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
COORDINATES: similar to AA sequence:RefSeq:WP_015342760.1
alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase
COORDINATES: protein motif:HMM:NF017011.2
COORDINATES: similar to AA sequence:RefSeq:WP_013532975.1
COORDINATES: protein motif:HMM:NF025887.2
COORDINATES: similar to AA sequence:RefSeq:WP_008833980.1
COORDINATES: similar to AA sequence:RefSeq:WP_019856738.1
COORDINATES: similar to AA sequence:RefSeq:WP_008596524.1
COORDINATES: similar to AA sequence:RefSeq:WP_019172296.1
COORDINATES: similar to AA sequence:RefSeq:WP_018896737.1
COORDINATES: similar to AA sequence:RefSeq:WP_018896736.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0015658 - branched-chain amino acid transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013896911.1
COORDINATES: similar to AA sequence:RefSeq:WP_019172292.1
COORDINATES: similar to AA sequence:RefSeq:WP_006204175.1
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: protein motif:HMM:NF028518.2
COORDINATES: similar to AA sequence:RefSeq:WP_006387588.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189093.1
hydroxypyruvate isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020185039.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0000976 - transcription cis-regulatory region binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007799690.1
COORDINATES: similar to AA sequence:RefSeq:WP_008228878.1
COORDINATES: similar to AA sequence:RefSeq:WP_008279867.1
COORDINATES: similar to AA sequence:RefSeq:WP_009817737.1
COORDINATES: similar to AA sequence:RefSeq:WP_013654258.1
COORDINATES: protein motif:HMM:NF012707.2
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007862016.1
GO:0071111 - cyclic-guanylate-specific phosphodiesterase activity [Evidence IEA]; GO:0000156 - phosphorelay response regulator activity [Evidence IEA]
EAL domain-containing response regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014130040.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.