Roseomonas gilardii strain U14-5 plasmid 3, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.
Complete Genome and Methylome Analysis of Psychrotrophic Bacterial Isolates from Antarctic Lake Untersee
Submitted (10-MAY-2016) Research, New England Biolabs, 240 County Road, Ipswich, MA 01938, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP015587.1.\nSource DNA and Bacteria are available from Dr.Vladimir N. Akimov,\nInstitute of Biochemistry and Physiology of Microorganisms,#Moscow\nregion, Pushino, 5 Science Ave, 142290 Russia.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP.3/Quiver v. v2.3.0\nGenome Coverage :: 287x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 03:51:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,961\nCDSs (total) :: 4,881\nGenes (coding) :: 4,824\nCDSs (with protein) :: 4,824\nGenes (RNA) :: 80\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 61\nncRNAs :: 4\nPseudo Genes (total) :: 57\nCDSs (without protein) :: 57\nPseudo Genes (ambiguous residues) :: 0 of 57\nPseudo Genes (frameshifted) :: 20 of 57\nPseudo Genes (incomplete) :: 41 of 57\nPseudo Genes (internal stop) :: 7 of 57\nPseudo Genes (multiple problems) :: 11 of 57\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Vladimir Akimov, Institute of Biochemistry and Physiology of Microorganisms
COORDINATES: similar to AA sequence:RefSeq:WP_007004461.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008068540.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010512376.1
COORDINATES: similar to AA sequence:RefSeq:WP_015279416.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: protein motif:HMM:NF018691.2
COORDINATES: protein motif:HMM:NF016670.2
COORDINATES: similar to AA sequence:RefSeq:WP_014242709.1
COORDINATES: similar to AA sequence:RefSeq:WP_007434478.1
COORDINATES: similar to AA sequence:RefSeq:WP_019463321.1
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019463320.1
COORDINATES: similar to AA sequence:RefSeq:WP_019463319.1
COORDINATES: similar to AA sequence:RefSeq:WP_008600975.1
COORDINATES: similar to AA sequence:RefSeq:WP_006337007.1
COORDINATES: similar to AA sequence:RefSeq:WP_008838392.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019463221.1
COORDINATES: similar to AA sequence:RefSeq:WP_019463222.1
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: protein motif:HMM:NF023398.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011086452.1
COORDINATES: similar to AA sequence:RefSeq:WP_012114685.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007742908.1
COORDINATES: similar to AA sequence:RefSeq:WP_019461987.1
COORDINATES: similar to AA sequence:RefSeq:WP_006936816.1
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: protein motif:HMM:NF015905.2
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013920.2
Zn-ribbon domain-containing OB-fold protein
COORDINATES: similar to AA sequence:RefSeq:WP_006400233.1
COORDINATES: similar to AA sequence:RefSeq:WP_013958953.1
COORDINATES: similar to AA sequence:RefSeq:WP_006400231.1
MaoC/PaaZ C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF024938.2
COORDINATES: similar to AA sequence:RefSeq:WP_007176410.1
CaiB/BaiF CoA-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011519937.1
COORDINATES: protein motif:HMM:NF015366.2
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: protein motif:HMM:NF019349.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017458979.1
COORDINATES: protein motif:HMM:NF015140.2
COORDINATES: protein motif:HMM:TIGR01764.1
COORDINATES: protein motif:HMM:NF016983.2
COORDINATES: similar to AA sequence:RefSeq:WP_019462891.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019463073.1
COORDINATES: similar to AA sequence:RefSeq:WP_012284632.1
COORDINATES: similar to AA sequence:RefSeq:WP_004860983.1
COORDINATES: similar to AA sequence:RefSeq:WP_007400727.1
GO:0016301 - kinase activity [Evidence IEA]
type II toxin-antitoxin system death-on-curing family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_003620405.1