Gulosibacter molinativorax strain ON4 plasmid pARLON1, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Microbacteriaceae; Gulosibacter.
Novel actinobacterial plasmid pARLON1 carrying the composite transposon Tn6311 from Gulosibacter molinativorax ON4T
Submitted (31-MAR-2018) LEPABE-Engenharia Quimica, Faculdade de Engenharia Universidade do Porto, Rua Dr Roberto Frias, porto 4200, Portugal
Submitted (14-MAR-2018) Engenharia Quimica-LEPABE, Universidade do Porto-FEUP, Rua Dr. Roberto Frias, Porto 4200-465, Portugal
REFSEQ INFORMATION: The reference sequence is identical to\nCP028427.1.\nBacteria and source DNA available from Olga Nunes, Rua Dr Roberto\nFrias, Portugal.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 31-SEP-2017\nAssembly Method :: Celera Assembler v. 3\nExpected Final Version :: yes\nGenome Coverage :: 300.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/16/2022 03:50:27\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,258\nCDSs (total) :: 3,197\nGenes (coding) :: 3,149\nCDSs (with protein) :: 3,149\nGenes (RNA) :: 61\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 3\nPseudo Genes (total) :: 48\nCDSs (without protein) :: 48\nPseudo Genes (ambiguous residues) :: 0 of 48\nPseudo Genes (frameshifted) :: 16 of 48\nPseudo Genes (incomplete) :: 34 of 48\nPseudo Genes (internal stop) :: 5 of 48\nPseudo Genes (multiple problems) :: 6 of 48\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Gulosibacter molinativorax
COORDINATES: similar to AA sequence:RefSeq:WP_019640568.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016491.2
GO:0030255 - protein secretion by the type IV secretion system [Evidence IEA]
COORDINATES: protein motif:HMM:NF024078.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013700.2
COORDINATES: protein motif:HMM:NF012708.2
COORDINATES: similar to AA sequence:RefSeq:WP_013347395.1
COORDINATES: similar to AA sequence:RefSeq:WP_015488943.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347400.1
COORDINATES: similar to AA sequence:RefSeq:WP_005053810.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011775022.1
GO:0097573 - glutathione oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: protein motif:HMM:NF012651.2
COORDINATES: similar to AA sequence:RefSeq:WP_016456418.1
COORDINATES: protein motif:HMM:NF036700.2
COORDINATES: similar to AA sequence:RefSeq:WP_014010931.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611468.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS3-like element ISGmo1 family transposase
COORDINATES: protein motif:HMM:NF014081.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019174038.1
COORDINATES: protein motif:HMM:NF014691.2
COORDINATES: similar to AA sequence:RefSeq:WP_013162107.1
COORDINATES: protein motif:HMM:NF017524.2
plasmid mobilization relaxosome protein MobC
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein