Pseudomonas atacamensis strain SM1 plasmid unnamed, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
Whole genome sequencing of Pseudomonas koreensis strain SM1
Submitted (11-FEB-2021) Biology, Khalifa Center for Genetic Engineering and Biotechnology, UAE University, Al-Ain 15551, United Arab Emirates
REFSEQ INFORMATION: The reference sequence is identical to\nCP070504.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.11.1\nAssembly Name :: hybrid assembly\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/01/2023 05:54:12\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,468\nCDSs (total) :: 5,383\nGenes (coding) :: 5,336\nCDSs (with protein) :: 5,336\nGenes (RNA) :: 85\nrRNAs :: 5, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 4, 4 (5S, 16S, 23S)\ntRNAs :: 68\nncRNAs :: 4\nPseudo Genes (total) :: 47\nCDSs (without protein) :: 47\nPseudo Genes (ambiguous residues) :: 0 of 47\nPseudo Genes (frameshifted) :: 11 of 47\nPseudo Genes (incomplete) :: 38 of 47\nPseudo Genes (internal stop) :: 5 of 47\nPseudo Genes (multiple problems) :: 5 of 47\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF012409.2
GO:0004568 - chitinase activity [Evidence IEA]
GO:0016998 - cell wall macromolecule catabolic process [Evidence IEA]; GO:0006032 - chitin catabolic process [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008077114.1
COORDINATES: similar to AA sequence:RefSeq:WP_003222197.1
COORDINATES: similar to AA sequence:RefSeq:WP_003098390.1
COORDINATES: protein motif:HMM:NF016595.2
COORDINATES: protein motif:HMM:NF037905.2
COORDINATES: protein motif:HMM:NF037921.2
COORDINATES: similar to AA sequence:RefSeq:WP_003407061.1
COORDINATES: protein motif:HMM:NF037909.2
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010456755.1
COORDINATES: protein motif:HMM:NF028096.2
Ref family recombination enhancement nuclease
COORDINATES: protein motif:HMM:NF041591.1
COORDINATES: similar to AA sequence:RefSeq:WP_003225334.1
COORDINATES: similar to AA sequence:RefSeq:WP_004532504.1
COORDINATES: similar to AA sequence:RefSeq:WP_007965063.1
COORDINATES: similar to AA sequence:RefSeq:WP_004723596.1
COORDINATES: similar to AA sequence:RefSeq:WP_007941884.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_417494.1
type II toxin-antitoxin system MqsR family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012216965.1
type II toxin-antitoxin system MqsA family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_010456139.1
COORDINATES: protein motif:HMM:NF022224.2
COORDINATES: similar to AA sequence:RefSeq:WP_017132027.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001550162.1
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF015550.2
COORDINATES: protein motif:HMM:NF017053.2
GO:0030908 - protein splicing [Evidence IEA]
Hint domain-containing homing endonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_015026471.1
COORDINATES: similar to AA sequence:RefSeq:WP_017479576.1
GO:0003824 - catalytic activity [Evidence IEA]
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015026524.1
COORDINATES: similar to AA sequence:RefSeq:WP_001565728.1