Vagococcus xieshaowenii strain CF-49 plasmid punnamed1, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Vagococcus.
Submitted (05-APR-2019) State Key Laboratory of Infection Disease Prevention and Control, Chinese Center for Disease Control and Prevention, 155 Changbai Road, Beijing, Beijing 102206, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP038866.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 1000.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/01/2023 02:54:06\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,027\nCDSs (total) :: 1,943\nGenes (coding) :: 1,912\nCDSs (with protein) :: 1,912\nGenes (RNA) :: 84\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 4\nPseudo Genes (total) :: 31\nCDSs (without protein) :: 31\nPseudo Genes (ambiguous residues) :: 0 of 31\nPseudo Genes (frameshifted) :: 20 of 31\nPseudo Genes (incomplete) :: 12 of 31\nPseudo Genes (internal stop) :: 3 of 31\nPseudo Genes (multiple problems) :: 4 of 31\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF037293.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF028253.2
COORDINATES: protein motif:HMM:NF015118.2
COORDINATES: protein motif:HMM:NF040179.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_000875579.1
COORDINATES: similar to AA sequence:RefSeq:WP_015543617.1
COORDINATES: similar to AA sequence:RefSeq:WP_010782370.1
COORDINATES: similar to AA sequence:RefSeq:WP_001085135.1
COORDINATES: protein motif:HMM:NF014581.2
COORDINATES: similar to AA sequence:RefSeq:WP_010750198.1
COORDINATES: similar to AA sequence:RefSeq:WP_002339803.1
COORDINATES: similar to AA sequence:RefSeq:WP_002339802.1
COORDINATES: similar to AA sequence:RefSeq:WP_010782365.1
COORDINATES: similar to AA sequence:RefSeq:WP_015543624.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
LPXTG cell wall anchor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002325780.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015543625.1
primase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000713595.1
COORDINATES: similar to AA sequence:RefSeq:WP_002295591.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000108743.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002355409.1
COORDINATES: similar to AA sequence:RefSeq:WP_002401482.1
COORDINATES: similar to AA sequence:RefSeq:WP_002333002.1
COORDINATES: similar to AA sequence:RefSeq:WP_010782381.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011100845.1
23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)
COORDINATES: similar to AA sequence:RefSeq:WP_001814874.1
23S rRNA methyltransferase attenuator leader peptide ErmL
COORDINATES: similar to AA sequence:RefSeq:WP_000502600.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002326830.1
COORDINATES: similar to AA sequence:RefSeq:WP_010782380.1
COORDINATES: similar to AA sequence:RefSeq:WP_002325622.1
COORDINATES: similar to AA sequence:RefSeq:WP_002332653.1