Citrobacter tructae strain SNU WT2 plasmid unnamed1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter.
Complete genome sequence of Citrobacter sp. SNU WT2 isolated from diseased rainbow trout
Submitted (31-MAR-2019) Department of Veterinary medicine, Seoul National University, Bldg. # 81, Room #421 Lab of Aquatic Biomedicine College of Veterinary Medicine, Seoul National Univ, Seoul, Korea, Republic Of 06363, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP038468.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 81.2x\nSequencing Technology :: PacBio RSII; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/28/2023 01:30:42\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,692\nCDSs (total) :: 4,576\nGenes (coding) :: 4,488\nCDSs (with protein) :: 4,488\nGenes (RNA) :: 116\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 84\nncRNAs :: 7\nPseudo Genes (total) :: 88\nCDSs (without protein) :: 88\nPseudo Genes (ambiguous residues) :: 0 of 88\nPseudo Genes (frameshifted) :: 39 of 88\nPseudo Genes (incomplete) :: 63 of 88\nPseudo Genes (internal stop) :: 15 of 88\nPseudo Genes (multiple problems) :: 27 of 88\nPseudo Genes (short protein) :: 1 of 88\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_000842452.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001542523.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001597012.1
COORDINATES: similar to AA sequence:RefSeq:WP_000646094.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_001755100.1
Members of this family include DotD of type IVB secretion systems and TraH of plasmid conjugative plasmid systems, both lipoproteins; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003557916.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_000486834.1
COORDINATES: similar to AA sequence:RefSeq:WP_000744278.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016499931.1
COORDINATES: similar to AA sequence:RefSeq:WP_001499587.1
shufflon system plasmid conjugative transfer pilus tip adhesin PilV
COORDINATES: protein motif:HMM:NF013632.2
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001774171.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000908226.1
COORDINATES: similar to AA sequence:RefSeq:WP_001699973.1
type II secretion system F family protein
COORDINATES: similar to AA sequence:RefSeq:WP_000362204.1
COORDINATES: protein motif:HMM:TIGR03021.1
GO:0009297 - pilus assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF018562.2
COORDINATES: similar to AA sequence:RefSeq:WP_001744074.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0009297 - pilus assembly [Evidence IEA]; GO:0009306 - protein secretion [Evidence IEA]
PilN family type IVB pilus formation outer membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_001744073.1
COORDINATES: similar to AA sequence:RefSeq:WP_001545759.1
COORDINATES: similar to AA sequence:RefSeq:WP_001303319.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
transcription termination/antitermination NusG family protein
COORDINATES: protein motif:HMM:NF019886.2
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_006122473.1
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611787.1
GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_005229637.1
IS110-like element IS4321 family transposase
COORDINATES: similar to AA sequence:RefSeq:YP_005221000.1
IS6-like element IS26 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_032492145.1
aminoglycoside O-phosphotransferase APH(3')-Ia
COORDINATES: similar to AA sequence:RefSeq:WP_001138014.1
IS110-like element IS5075 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_000954590.1
Arm DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_001043260.1
sulfonamide-resistant dihydropteroate synthase Sul2
COORDINATES: similar to AA sequence:RefSeq:WP_010890156.1
aminoglycoside O-phosphotransferase APH(3'')-Ib
COORDINATES: similar to AA sequence:RefSeq:WP_000480972.1
aminoglycoside O-phosphotransferase APH(6)-Id
COORDINATES: similar to AA sequence:RefSeq:WP_001120888.1
COORDINATES: similar to AA sequence:RefSeq:WP_001255015.1
COORDINATES: similar to AA sequence:RefSeq:WP_000214125.1
chloramphenicol/florfenicol efflux MFS transporter FloR
COORDINATES: protein motif:HMM:NF023271.2
IS91-like element ISVsa3 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_000743213.1
COORDINATES: similar to AA sequence:RefSeq:WP_001370723.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000113092.1
tetracycline resistance transcriptional repressor TetR(D)
COORDINATES: similar to AA sequence:RefSeq:WP_001039466.1
tetracycline efflux MFS transporter Tet(D)
COORDINATES: similar to AA sequence:RefSeq:NP_308438.1
GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity [Evidence IEA]
GO:0006113 - fermentation [Evidence IEA]; GO:0009404 - toxin metabolic process [Evidence IEA]
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_000376303.1
COORDINATES: similar to AA sequence:RefSeq:WP_001549890.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004206893.1
COORDINATES: similar to AA sequence:RefSeq:WP_011906493.1
COORDINATES: similar to AA sequence:RefSeq:WP_000343099.1
COORDINATES: similar to AA sequence:RefSeq:WP_019843181.1
COORDINATES: similar to AA sequence:RefSeq:WP_005933773.1
COORDINATES: similar to AA sequence:RefSeq:WP_016193196.1
COORDINATES: similar to AA sequence:RefSeq:WP_001505082.1
COORDINATES: similar to AA sequence:RefSeq:WP_020801683.1
plasmid partitioning/stability family protein
COORDINATES: similar to AA sequence:RefSeq:WP_000457545.1
COORDINATES: similar to AA sequence:RefSeq:WP_008455414.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:NP_490546.1
COORDINATES: similar to AA sequence:RefSeq:WP_008322842.1
COORDINATES: similar to AA sequence:RefSeq:WP_020314633.1
COORDINATES: similar to AA sequence:RefSeq:WP_013578318.1
COORDINATES: similar to AA sequence:RefSeq:WP_001750289.1
COORDINATES: similar to AA sequence:RefSeq:WP_001485380.1
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF010255.1
COORDINATES: similar to AA sequence:RefSeq:WP_000613062.1
COORDINATES: similar to AA sequence:RefSeq:WP_016589766.1
COORDINATES: protein motif:HMM:NF036604.2
COORDINATES: similar to AA sequence:RefSeq:NP_052660.1
type I toxin-antitoxin system Hok family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004152749.1
COORDINATES: similar to AA sequence:RefSeq:WP_000080850.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004131746.1
COORDINATES: similar to AA sequence:RefSeq:WP_017900696.1
COORDINATES: similar to AA sequence:RefSeq:WP_000148350.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_001403164.1
COORDINATES: protein motif:HMM:NF039307.1
COORDINATES: similar to AA sequence:RefSeq:WP_000113358.1
COORDINATES: similar to AA sequence:RefSeq:WP_015873526.1
COORDINATES: similar to AA sequence:RefSeq:WP_001281049.1
COORDINATES: similar to AA sequence:RefSeq:WP_001611791.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006319061.1
COORDINATES: similar to AA sequence:RefSeq:WP_000077650.1
F-type conjugative transfer protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_000817271.1
RNA-guided endonuclease TnpB family protein
COORDINATES: protein motif:HMM:NF024498.2
thioredoxin fold domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_001303305.1
COORDINATES: protein motif:HMM:NF033891.1
plasmid IncI1-type surface exclusion protein ExcA
COORDINATES: similar to AA sequence:RefSeq:WP_000691811.1
COORDINATES: protein motif:HMM:NF033887.1
COORDINATES: similar to AA sequence:RefSeq:WP_001542514.1
COORDINATES: similar to AA sequence:RefSeq:WP_001024755.1
COORDINATES: similar to AA sequence:RefSeq:WP_001542519.1
COORDINATES: similar to AA sequence:RefSeq:WP_001090608.1
COORDINATES: protein motif:HMM:NF033885.1
COORDINATES: protein motif:HMM:NF033884.1
COORDINATES: similar to AA sequence:RefSeq:WP_001611718.1
DotH/IcmK family type IV secretion protein
COORDINATES: similar to AA sequence:RefSeq:WP_001838509.1
COORDINATES: similar to AA sequence:RefSeq:WP_001629514.1
COORDINATES: protein motif:HMM:NF037421.2