Candidatus Campylobacter infans strain 19S00001 plasmid unnamed, complete sequence.
Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter.
Complete genome sequence of the novel Campylobacter species Candidatus Campylobacter infans
Submitted (20-FEB-2020) Infectious Diseases and Immunology, Utrecht University, Yalelaan 1, Utrecht 3845 CL, Netherlands
REFSEQ INFORMATION: The reference sequence is identical to\nCP049076.1.\nBacteria and source DNA available from Jaap Wagenaar, Birgitta\nDuim.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 30-JAN-2020\nAssembly Method :: SPAdes v. 3.10.1; Unicycler v. 0.4.7\nAssembly Name :: 19S00001-1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina NextSeq; Oxford Nanopore MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/17/2023 03:08:08\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,790\nCDSs (total) :: 1,743\nGenes (coding) :: 1,720\nCDSs (with protein) :: 1,720\nGenes (RNA) :: 47\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 38\nncRNAs :: 3\nPseudo Genes (total) :: 23\nCDSs (without protein) :: 23\nPseudo Genes (ambiguous residues) :: 0 of 23\nPseudo Genes (frameshifted) :: 8 of 23\nPseudo Genes (incomplete) :: 19 of 23\nPseudo Genes (internal stop) :: 3 of 23\nPseudo Genes (multiple problems) :: 6 of 23\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF013235.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018264009.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012855844.1
helix-turn-helix domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.