Paracoccus liaowanqingii strain 2251 plasmid unnamed10, complete sequence.
type: Entry
definition: Paracoccus liaowanqingii strain 2251 plasmid unnamed10, complete sequence.
sequence version: NZ_CP040757.1
sequence date: 2022-12-23
sequence: sequence
division: CON
label: NZ_CP040757.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN08932433
keyword: RefSeq
source: Paracoccus liaowanqingii
organism: Paracoccus liaowanqingii
taxonomy: Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.
reference: 1
references: 31674893
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP040757.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAPdenovo v. 4.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/23/2022 04:22:22\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,759\nCDSs (total) :: 4,694\nGenes (coding) :: 4,486\nCDSs (with protein) :: 4,486\nGenes (RNA) :: 65\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 3\nPseudo Genes (total) :: 208\nCDSs (without protein) :: 208\nPseudo Genes (ambiguous residues) :: 0 of 208\nPseudo Genes (frameshifted) :: 104 of 208\nPseudo Genes (incomplete) :: 126 of 208\nPseudo Genes (internal stop) :: 32 of 208\nPseudo Genes (multiple problems) :: 49 of 208\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 16958
topology: circular
so has quality: SO_0000988
location: 1..16958
location: region:1-16958:1
RO_0002162: 2560053

NZ_CP040757
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN08932433
type: BioSample
SIO_000068: biosample

1
title: Paracoccus liaowanqingii sp. nov., isolated from Tibetan antelope (Pantholops hodgsonii)
author: Li, J.
author: Lu, S.
author: Jin, D.
author: Yang, J.
author: Lai, X.H.
author: Huang, Y.
author: Tian, Z.
author: Dong, K.
author: Zhang, S.
author: Lei, W.
author: Pu, J.
author: Zhang, G.
author: Wu, X.
author: Ren, Z.
author: Wang, S.
author: Xu, J.
journal: Int J Syst Evol Microbiol
volume: 70
issue: 2
pages: 744-750
year: 2020
pubmed: 31674893

31674893
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Li, J.
journal: Submitted (29-MAY-2019) National Institue for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping District Changbai Road, No. 155, Beijing, Beijing 102206, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16958:1
position: 16958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16958:1:source
so part of: sequence
organism: Paracoccus liaowanqingii
mol type: genomic DNA
strain: 2251
isolation source: feces
host: Tibetan antelope
type material: type material of Paracoccus liaowanqingii
plasmid: unnamed10
country: China:Qinghai Province
collection date: 2017-10-18

2560053
type: Taxonomy
SIO_000068: taxonomy

E4191_RS15945
type: Gene
subclass of: SO_0000704
RO_0002162: 2560053
locus tag: E4191_RS15945
old locus tag: E4191_15955
so part of: sequence
location: 82..336
location: region:82-336:1
so has part: feature:82-336:1:exon
subclass of: SO_0000010

position:82:1
position: 82
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:336:1
position: 336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:82-336:1:exon

E4191_RS15945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2560053
locus tag: E4191_RS15945
old locus tag: E4191_15955
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNTDEYRAMFRSVGLTEDQLNTVMNYFLTFREAPQITSTSCFEMATAIYAVMDGSLNPADLHSPAARYMISLGTRIAAWEAQAT
SIO_010081: E4191_RS15945
subclass of: SO_0000673
so part of: E4191_RS15945
location: 82..336
location: region:82-336:1
so has part: feature:82-336:1:exon

WP_139615500.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:82-336:1:exon

E4191_RS15950
type: Gene
subclass of: SO_0000704
RO_0002162: 2560053
locus tag: E4191_RS15950
old locus tag: E4191_15960
so part of: sequence
location: 726..1007
location: region:726-1007:1
so has part: feature:726-1007:1:exon
subclass of: SO_0000010

position:726:1
position: 726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1007:1
position: 1007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:726-1007:1:exon

E4191_RS15950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2560053
locus tag: E4191_RS15950
old locus tag: E4191_15960
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPEDDTASEQRKGAGGSRKIPVGEYNHHEEPEISYYRPSKADMKHFNLQSEAKCLIPREVKGANNLVALLQWYLIAAFLFTLLGVLIFCWFYS
SIO_010081: E4191_RS15950
subclass of: SO_0000673
so part of: E4191_RS15950
location: 726..1007
location: region:726-1007:1
so has part: feature:726-1007:1:exon

WP_139615501.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:726-1007:1:exon

E4191_RS15955
type: Gene
subclass of: SO_0000704
RO_0002162: 2560053
locus tag: E4191_RS15955
old locus tag: E4191_15965
so part of: sequence
location: 1101..2390
location: region:1101-2390:1
so has part: feature:1101-2390:1:exon
subclass of: SO_0000010

position:1101:1
position: 1101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2390:1
position: 2390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1101-2390:1:exon

E4191_RS15955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2560053
locus tag: E4191_RS15955
old locus tag: E4191_15965
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020040554.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase
translation: MSRLRVLVLAESCNPDWPSLPVVGYKYARALGQVVDMTLVTHIRNRENIEMTGEMTGSIHYIDNEWLAAPMYRLASRLRGGSEVAWSTNQIMAYPPYLFFERQTWSRFRKDMKAGAFDLVHRITPMSPTLPSWIAGRGNLPFVIGPLNGNLDWPTQFAEEQKRERERLRKLRDLYKFLPYARRTYRRASAVLAAFEHTVRDLSDADPDRVIPMPEIGFDPQIFYAEGRRPAFSGSAPYRFLYAGRLVPYKLPEVAIRAFISSHLLRLHRLHIVGDGPELGRLQKLVVSAGAENQVFFEGRKTQSDVAQSMRDCDAFVFPSIRELGAGVVIEAMASGIPCIVAEYGAPADLAAKGRGIRIPLASREEMIITCRQKMEACVQGNEDIQAITERAKTYATTLYKWERKAAYTLEIYRTVLEKRSLKGLKDYL
SIO_010081: E4191_RS15955
subclass of: SO_0000673
so part of: E4191_RS15955
location: 1101..2390
location: region:1101-2390:1
so has part: feature:1101-2390:1:exon

WP_139615502.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1101-2390:1:exon

E4191_RS15960
type: Gene
subclass of: SO_0000704
RO_0002162: 2560053
locus tag: E4191_RS15960
old locus tag: E4191_15970
so part of: sequence
location: 2678..3106
location: region:2678-3106:1
so has part: feature:2678-3106:1:exon
subclass of: SO_0000010

position:2678:1
position: 2678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3106:1
position: 3106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2678-3106:1:exon

E4191_RS15960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2560053
locus tag: E4191_RS15960
old locus tag: E4191_15970
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014531097.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MADGGDGFDGCIEVVRRTRGYRRWPDNVKARIVAESFQPRARVADVARRHDLAAHQLSDWRRQARKGRLVLPADAMAGVASDALPAFVPVSVEPEDVGLSADPERTVGVITIEIGNDLVLRVPGDVPVERAAAVARALRGSA
SIO_010081: E4191_RS15960
subclass of: SO_0000673
so part of: E4191_RS15960
location: 2678..3106
location: region:2678-3106:1
so has part: feature:2678-3106:1:exon

WP_139615515.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2678-3106:1:exon

E4191_RS15965
type: Gene
subclass of: SO_0000704
RO_0002162: 2560053
gene: tnpB
locus tag: E4191_RS15965
old locus tag: E4191_15975
so part of: sequence
location: 3103..3456
location: region:3103-3456:1
so has part: feature:3103-3456:1:exon
subclass of: SO_0000010

position:3103:1
position: 3103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3456:1
position: 3456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3103-3456:1:exon

E4191_RS15965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2560053
gene: tnpB
locus tag: E4191_RS15965
old locus tag: E4191_15975
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018273520.1
note: TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS66 family insertion sequence element accessory protein TnpB
translation: MIVAGQRQPILIATRPVDFRCGHRALALIVQTELKLDPHSGVTIVFRSKRGDRLKILVWDGTGLVMVYKVLEQGSFSWPKVQDGTMRLSRAQHEALFEGLDWRRIVAQRVAPPIAAG
SIO_010081: E4191_RS15965
subclass of: SO_0000673
so part of: E4191_RS15965
location: 3103..3456
location: region:3103-3456:1
so has part: feature:3103-3456:1:exon

WP_139615503.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3103-3456:1:exon

E4191_RS15970
type: Gene
subclass of: SO_0000704
RO_0002162: 2560053
locus tag: E4191_RS15970
old locus tag: E4191_15980
so part of: sequence
location: 3520..5172
location: region:3520-5172:1
so has part: feature:3520-5172:1:exon
subclass of: SO_0000010

position:3520:1
position: 3520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5172:1
position: 5172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3520-5172:1:exon

E4191_RS15970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2560053
locus tag: E4191_RS15970
old locus tag: E4191_15980
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009808286.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS66 family transposase
translation: MSQPFDLSLFPDLPPEVVKAFEAAQFELSVERAARQHEQAVGAEKDAFITELKALIEKLEGQVGQYRHAKFGPKSEKLDPAQLELALEDLEAAIAETQEQIAAVEAKISASETDPEKKVPGKKRKARSLPQHLPRVERVIEPDSIVCPCGCGDMVRIGEDRTERLDYIPARYQVIVSVRPKYACPKGRTGVVQARAAAHLLEGSWPTEALLAQIAVSKHSEHMPLNRQAVVMARHGVPIDRSVLADWMGRTGALIAPVVDRMAVLLKQGSTRLYVDETTAPVLDPGRGKTKAGYLWAVLRDDRGWNGPAPPGVVFHYRPGRKGDYANEILTGFNGTIQVDAYGAYTHLATPKRTGGDPLRLAFCWAHGRRKLIKAKPKKGSPIVDEALVRIAALYKVEDVIRGADPVHRRAVRLELSCPLVDQFFAWLAAQAARISRKSDLGVALAYMLRRQDGFRLFLEDGHVDMDSNLVENAIRSPAMNRRNALFAGHDEGGRSWARFASLIGSCKMNGVEPYAYLRDLFTRLANGHLDKDIDALMPWAYAATPSPSQ
SIO_010081: E4191_RS15970
subclass of: SO_0000673
so part of: E4191_RS15970
location: 3520..5172
location: region:3520-5172:1
so has part: feature:3520-5172:1:exon

WP_139615504.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3520-5172:1:exon

E4191_RS15975
type: Gene
subclass of: SO_0000704
RO_0002162: 2560053
locus tag: E4191_RS15975
old locus tag: E4191_15985
so part of: sequence
location: 5432..6475
location: region:5432-6475:1
so has part: feature:5432-6475:1:exon
subclass of: SO_0000010

position:5432:1
position: 5432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6475:1
position: 6475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5432-6475:1:exon

E4191_RS15975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2560053
locus tag: E4191_RS15975
old locus tag: E4191_15985
inference: COORDINATES: protein motif:HMM:NF016464.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase family 61 protein
translation: MTLLPLVHRFRKRIGFFQKLQDAAAEILVLAPEEKNQRLAAISLPAQIDRIRAVQSDTSLDYEASRLTSGEINHTPTRAFLLKNAWYINGVIFAGNAREPQVPERESLISFEKTKHLTRAAFPSSLVGSQYFGHHVVDDSATTLLANEFGPVFRAPAKAARTWPHAAAYRTRLNIEAPVLTKARVAEAWVFQDWGMTGHRRDRLIKLRLQLRDTPGSRIGHGVFLRRRGSGAARLLANEQEIEEKLSSLGFEIIDPTNDSIESIIMRCRDAGIVVGVEGSGLAHGFLSCAPNAKFLVLQHPYRFNNVWKDFTDALEMRYAFLVGEGTKDSFHISPDELCATLDLLSF
SIO_010081: E4191_RS15975
subclass of: SO_0000673
so part of: E4191_RS15975
location: 5432..6475
location: region:5432-6475:1
so has part: feature:5432-6475:1:exon

WP_139615505.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5432-6475:1:exon

E4191_RS15980
type: Gene
subclass of: SO_0000704
RO_0002162: 2560053
locus tag: E4191_RS15980
old locus tag: E4191_15990
so part of: sequence
location: complement(6734..7510)
location: region:6734-7510:-1
so has part: feature:6734-7510:-1:exon
subclass of: SO_0000010

position:6734:-1
position: 6734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7510:-1
position: 7510
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6734-7510:-1:exon

E4191_RS15980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2560053
locus tag: E4191_RS15980
old locus tag: E4191_15990
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNSLPKIGTLWIGGKLPDIERLCISSMAGNGHEVTLYTYSDVCAPKGVIVEDASFIIPKKDVFTYKKTGSYATFADWFRLRMIAMTGKVWLDADVALLKPFNPADEYFFVGGTHKSFGHSVNNYAIKMPANSDICKDALSYFDSPMKFLRYMAWHRSVRISANRAITGSWDLSKFRWGVFGMGVLTDLVKKHRLDNYVHYNGEKIVEGVSSIISPMDSKSLSSVEIAHFFSSCLANKDIYSFRSGQSSIYERLNNLYS
SIO_010081: E4191_RS15980
subclass of: SO_0000673
so part of: E4191_RS15980
location: complement(6734..7510)
location: region:6734-7510:-1
so has part: feature:6734-7510:-1:exon

WP_139615506.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6734-7510:-1:exon

E4191_RS15985
type: Gene
subclass of: SO_0000704
RO_0002162: 2560053
locus tag: E4191_RS15985
old locus tag: E4191_15995
so part of: sequence
location: complement(8171..8467)
location: region:8171-8467:-1
so has part: feature:8171-8467:-1:exon
subclass of: SO_0000010

position:8171:-1
position: 8171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8467:-1
position: 8467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8171-8467:-1:exon

E4191_RS15985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2560053
locus tag: E4191_RS15985
old locus tag: E4191_15995
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010214476.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MALLEATFETRREAEMSIERLVQEFGLDRKAIEIVADGALNSAGEDTSGGDNASDSPSPSEREDAALNDRIRVSVNVDDAAEAQRVRDAFSEFGGDRS
SIO_010081: E4191_RS15985
subclass of: SO_0000673
so part of: E4191_RS15985
location: complement(8171..8467)
location: region:8171-8467:-1
so has part: feature:8171-8467:-1:exon

WP_139615507.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8171-8467:-1:exon

E4191_RS15990
type: Gene
subclass of: SO_0000704
RO_0002162: 2560053
locus tag: E4191_RS15990
old locus tag: E4191_16000
so part of: sequence
location: complement(8707..8859)
location: region:8707-8859:-1
so has part: feature:8707-8859:-1:exon
subclass of: SO_0000010

position:8707:-1
position: 8707
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8859:-1
position: 8859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8707-8859:-1:exon

E4191_RS15990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2560053
locus tag: E4191_RS15990
old locus tag: E4191_16000
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007121444.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribbon-helix-helix protein, CopG family
translation: MADAKEVQVLVRMPAAMAERLDASRRQAADLPSRPEVIRRLIEQVLPNTA
SIO_010081: E4191_RS15990
subclass of: SO_0000673
so part of: E4191_RS15990
location: complement(8707..8859)
location: region:8707-8859:-1
so has part: feature:8707-8859:-1:exon

WP_228461770.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8707-8859:-1:exon

E4191_RS15995
type: Gene
subclass of: SO_0000704
RO_0002162: 2560053
locus tag: E4191_RS15995
old locus tag: E4191_16005
so part of: sequence
location: 8960..9166
location: region:8960-9166:1
so has part: feature:8960-9166:1:exon
subclass of: SO_0000010

position:8960:1
position: 8960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9166:1
position: 9166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8960-9166:1:exon

E4191_RS15995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2560053
locus tag: E4191_RS15995
old locus tag: E4191_16005
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MHHAPGAFAAASVQDDEPFLDLVDRMTPDRLRQLAALCAARGGGLEGMVGPLRAYAEVQGRSTAGRGA
SIO_010081: E4191_RS15995
subclass of: SO_0000673
so part of: E4191_RS15995
location: 8960..9166
location: region:8960-9166:1
so has part: feature:8960-9166:1:exon

WP_139615508.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8960-9166:1:exon

E4191_RS16000
type: Gene
subclass of: SO_0000704
RO_0002162: 2560053
locus tag: E4191_RS16000
old locus tag: E4191_16010
so part of: sequence
location: 9375..9572
location: region:9375-9572:1
so has part: feature:9375-9572:1:exon
subclass of: SO_0000010

position:9375:1
position: 9375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9572:1
position: 9572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9375-9572:1:exon

E4191_RS16000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2560053
locus tag: E4191_RS16000
old locus tag: E4191_16010
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTIIGADFFRILSLRGPIFKENGSFDLDLYFGINDVKRTLPRPQEFPCLTLGDRENISQRLSDAV
SIO_010081: E4191_RS16000
subclass of: SO_0000673
so part of: E4191_RS16000
location: 9375..9572
location: region:9375-9572:1
so has part: feature:9375-9572:1:exon

WP_139615509.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9375-9572:1:exon

E4191_RS16005
type: Gene
subclass of: SO_0000704
RO_0002162: 2560053
locus tag: E4191_RS16005
old locus tag: E4191_16015
so part of: sequence
location: complement(9649..10110)
location: region:9649-10110:-1
so has part: feature:9649-10110:-1:exon
subclass of: SO_0000010

position:9649:-1
position: 9649
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10110:-1
position: 10110
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9649-10110:-1:exon

E4191_RS16005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2560053
locus tag: E4191_RS16005
old locus tag: E4191_16015
inference: COORDINATES: protein motif:HMM:NF016807.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BLUF domain-containing protein
translation: MILNRLIYSSYHGGIEIESIGKILDVSRANNRREDITGSLIVDSEDFVQLLEGSQTAIANCFMRITLDNRHRNLKILLSERLDIRLFKSWSMHLLHMSRIKEEAMSAYGLDGIYNFANLPADDVIRIFKRISAGNAERIVSAENCEVPKSLLM
SIO_010081: E4191_RS16005
subclass of: SO_0000673
so part of: E4191_RS16005
location: complement(9649..10110)
location: region:9649-10110:-1
so has part: feature:9649-10110:-1:exon

WP_139615510.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9649-10110:-1:exon

E4191_RS16010
type: Gene
subclass of: SO_0000704
RO_0002162: 2560053
locus tag: E4191_RS16010
old locus tag: E4191_16020
so part of: sequence
location: 10811..13084
location: region:10811-13084:1
so has part: feature:10811-13084:1:exon
subclass of: SO_0000010

position:10811:1
position: 10811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13084:1
position: 13084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10811-13084:1:exon

E4191_RS16010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2560053
locus tag: E4191_RS16010
old locus tag: E4191_16020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017483569.1
GO function: GO:0005515 - protein binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PAS domain-containing protein
translation: MVEAKTTDNWPTTPESEMAARIRDFDWSNTPLGSSADWPQALRAAVDLILDASFPSYVWWGPDLVQFYNDPAIDVNGSKHPGLLGTSARTAWPDLWGIVGGIAERVFTTGRPERGEDVPMVPDRGGPKQTAWFTFSYSALRNETGTVAGLFITGIETTELVRAQMALRDSEERHRLVIESWAQAVWETDANGMVVADSPSWRAYTGQSLQEWLGYGWLDAIHPDDRAYAEQQWREAIAARAPVNADFRLRVPGNGWRWTNVRAAPRFGSEGHIEKWVGINIDIDSHKRAENELRISEERFREFGRASSDGLWIRDAKTLKLQYASDAMEVIYGLSNEAMTADPMAWPALIVPEDRDETFGYIERVKAGESVVHEFRIQRPSDLQFRWIRSVGFPLFDERGDVSRLAGISSDITEQKQLTEHQGILLAELQHRVRNIMGLIRSIGNRSAVGASSVEDYRQALEGRMLALARVQALLTREANAGGSLRDIIEGEVQVQAYHPHQFNLIGPDIILSPKAVEVLTLAFHELATNALKYGAFSVPEGRLTVHWSQFEKRGSPWLVIDWVEEGRPPQPPPTRRGFGSELIEARIPYELGGMGKVSIESGGARCRIEFPLQDAESILETDAPMPLTTFGGTIDMTGAPNLTGRIILVVEDDYYLAADTVAALRGAGATVLGPCPSQETTHDLLKTELPTHAILDLNLGGGGPKFDIAQLLKARNVPFIFITGYDPDVIPPELADVPRLQKPTPFRTIVEAISQL
SIO_010081: E4191_RS16010
subclass of: SO_0000673
so part of: E4191_RS16010
location: 10811..13084
location: region:10811-13084:1
so has part: feature:10811-13084:1:exon

WP_228461772.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10811-13084:1:exon

E4191_RS16015
type: Gene
subclass of: SO_0000704
RO_0002162: 2560053
locus tag: E4191_RS16015
old locus tag: E4191_16025
so part of: sequence
location: complement(13131..13319)
location: region:13131-13319:-1
so has part: feature:13131-13319:-1:exon
subclass of: SO_0000010

position:13131:-1
position: 13131
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13319:-1
position: 13319
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13131-13319:-1:exon

E4191_RS16015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2560053
locus tag: E4191_RS16015
old locus tag: E4191_16025
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPDQDPDQQKPVEDQANQTLAQSVKALQERVRKMGVVLNRSDDTAFMDKASGDESGDAEDYQ
SIO_010081: E4191_RS16015
subclass of: SO_0000673
so part of: E4191_RS16015
location: complement(13131..13319)
location: region:13131-13319:-1
so has part: feature:13131-13319:-1:exon

WP_139615511.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13131-13319:-1:exon

E4191_RS16020
type: Gene
subclass of: SO_0000704
RO_0002162: 2560053
locus tag: E4191_RS16020
old locus tag: E4191_16030
so part of: sequence
location: 13596..14816
location: region:13596-14816:1
so has part: feature:13596-14816:1:exon
subclass of: SO_0000010

position:13596:1
position: 13596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14816:1
position: 14816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13596-14816:1:exon

E4191_RS16020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2560053
locus tag: E4191_RS16020
old locus tag: E4191_16030
inference: COORDINATES: protein motif:HMM:NF013258.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid recombination protein
translation: MANAVDAVMGRFEADKRRNGGSLPRPPVGSRRFAILRVAKISGKGKMAAAAQHNLRERDTPNARPEDRSRNVHLAGARTADELMRLWEDRAPEKIRKNAVHALEYVVTASPEKMAEMGQTRSEDYLRDALTWLQDKHGAENILSAVIHNDEITPHLQVMVIPLDDRGKLNARALVGGKPQLSAMQTDFAERVGVKYELERGIERSGRRHEAIRSYYGRATANETLTLRLPERARGGFLGRGAETDAEYRDRLSEVASEAVRAVAGRLAGDRNAIAQELAEAKLRAANSEAKAHRLGRDLNVLEVACNVARYDGSDREKVLDRFQAEYLGLAAELSEGVRDIVDDILNENDRPGFEDIQTEREAAERHAREQVQERDRAAEQERQAREKAERQQDERDRERDGGWER
SIO_010081: E4191_RS16020
subclass of: SO_0000673
so part of: E4191_RS16020
location: 13596..14816
location: region:13596-14816:1
so has part: feature:13596-14816:1:exon

WP_176562755.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13596-14816:1:exon

E4191_RS16025
type: Gene
subclass of: SO_0000704
RO_0002162: 2560053
locus tag: E4191_RS16025
old locus tag: E4191_16035
so part of: sequence
location: 15338..15919
location: region:15338-15919:1
so has part: feature:15338-15919:1:exon
subclass of: SO_0000010

position:15338:1
position: 15338
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15919:1
position: 15919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15338-15919:1:exon

E4191_RS16025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2560053
locus tag: E4191_RS16025
old locus tag: E4191_16035
inference: COORDINATES: protein motif:HMM:NF017542.2
GO function: GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GntR family transcriptional regulator
translation: MTRQLPVRKLRGTWVQTERAAHEEWAQLIIRAPKAAAVMHILTARMGENNAVVISQRELQDATGVSRPTVQRALNTLRDENWIEIWQVGESGTVNAYVVNDRVAWHGSRDGIRRSLMSATLVLSEREQKGKEHLIGQNTPLKHVPTQLPGEQQLPSGDGLPPVSQPALPGMDADLPATRRLYDPVTGEMLEGQ
SIO_010081: E4191_RS16025
subclass of: SO_0000673
so part of: E4191_RS16025
location: 15338..15919
location: region:15338-15919:1
so has part: feature:15338-15919:1:exon

WP_139615513.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15338-15919:1:exon

E4191_RS16030
type: Gene
subclass of: SO_0000704
RO_0002162: 2560053
locus tag: E4191_RS16030
old locus tag: E4191_16040
so part of: sequence
location: complement(15947..16552)
location: region:15947-16552:-1
so has part: feature:15947-16552:-1:exon
subclass of: SO_0000010

position:15947:-1
position: 15947
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16552:-1
position: 16552
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15947-16552:-1:exon

E4191_RS16030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2560053
locus tag: E4191_RS16030
old locus tag: E4191_16040
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNGGTMETKLTLSRAADLSGHNKSKIHRAIQKGALSASQPSPGEQYEIERSEFERVFPPKEWPSLNEVPERPQNIRSTGSFETGFDERSSILAVKLEATEVRLAELQEALTRERDRADRFEDERQRLLEAPRTEVERERAERERERQEAERRDQERRDEAERLRNELERARQEQDRLAREADELRQALLKPQSLWARLTGR
SIO_010081: E4191_RS16030
subclass of: SO_0000673
so part of: E4191_RS16030
location: complement(15947..16552)
location: region:15947-16552:-1
so has part: feature:15947-16552:-1:exon

WP_139615514.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15947-16552:-1:exon