Cutibacterium modestum strain F0672 plasmid unnamed1, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Propionibacteriales; Propionibacteriaceae; Cutibacterium.
Submitted (17-AUG-2016) Alkek Center for Metagenomics and Microbiome Research, Department of Molecular Virology and Microbiology, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP017041.1.\nSource DNA and bacterial cultures: H. Boisvert, T. A. Joyce, N.\nHuang, and F. E. Dewhirst Direct requests to the Human Oral\nMicrobiome Project, The Forsyth Institute, 245 First Street,\nCambridge, MA, 02142, USA.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT Analysis RS_HGAP_Assembly.2 v.\n 2.3.0.140936.p4.150482\nAssembly Name :: F0672_Propionibacterium_sp_oral_taxon_193\nGenome Coverage :: 182x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 00:21:09\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,534\nCDSs (total) :: 2,475\nGenes (coding) :: 2,226\nCDSs (with protein) :: 2,226\nGenes (RNA) :: 59\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 4\nPseudo Genes (total) :: 249\nCDSs (without protein) :: 249\nPseudo Genes (ambiguous residues) :: 0 of 249\nPseudo Genes (frameshifted) :: 180 of 249\nPseudo Genes (incomplete) :: 83 of 249\nPseudo Genes (internal stop) :: 52 of 249\nPseudo Genes (multiple problems) :: 54 of 249\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_002513427.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002551123.1
COORDINATES: similar to AA sequence:RefSeq:WP_002539173.1
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002545137.1
COORDINATES: similar to AA sequence:RefSeq:WP_014172514.1
COORDINATES: protein motif:HMM:NF012759.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002541609.1
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: similar to AA sequence:RefSeq:WP_002517695.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
2,3-diaminopropionate biosynthesis protein SbnB
COORDINATES: similar to AA sequence:RefSeq:WP_002532888.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
2,3-diaminopropionate biosynthesis protein SbnA
COORDINATES: similar to AA sequence:RefSeq:WP_002516566.1
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
4'-phosphopantetheinyl transferase superfamily protein
COORDINATES: similar to AA sequence:RefSeq:WP_002518883.1
COORDINATES: similar to AA sequence:RefSeq:WP_002524907.1
COORDINATES: similar to AA sequence:RefSeq:WP_002516565.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002537985.1
COORDINATES: similar to AA sequence:RefSeq:WP_002526524.1
COORDINATES: similar to AA sequence:RefSeq:WP_002526525.1
COORDINATES: similar to AA sequence:RefSeq:WP_002544559.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002526528.1
COORDINATES: similar to AA sequence:RefSeq:WP_002521512.1
COORDINATES: similar to AA sequence:RefSeq:WP_002519448.1
COORDINATES: similar to AA sequence:RefSeq:WP_002513402.1
COORDINATES: similar to AA sequence:RefSeq:WP_002519447.1
COORDINATES: similar to AA sequence:RefSeq:WP_002526534.1
ribbon-helix-helix domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_002516809.1
COORDINATES: similar to AA sequence:RefSeq:WP_002519901.1
type II toxin-antitoxin system HicA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_002546247.1
COORDINATES: similar to AA sequence:RefSeq:WP_002546462.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002532345.1
COORDINATES: similar to AA sequence:RefSeq:WP_007434389.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002543256.1
IS607 family element RNA-guided endonuclease TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_007434391.1
COORDINATES: similar to AA sequence:RefSeq:WP_002524266.1
nuclear pore complex interacting protein
COORDINATES: similar to AA sequence:RefSeq:WP_002520130.1
COORDINATES: similar to AA sequence:RefSeq:WP_002518485.1
COORDINATES: similar to AA sequence:RefSeq:WP_002522318.1
COORDINATES: similar to AA sequence:RefSeq:WP_002543540.1
COORDINATES: similar to AA sequence:RefSeq:WP_002540507.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002523333.1
COORDINATES: similar to AA sequence:RefSeq:WP_002542651.1
COORDINATES: similar to AA sequence:RefSeq:WP_002549016.1
COORDINATES: similar to AA sequence:RefSeq:WP_003527342.1
COORDINATES: similar to AA sequence:RefSeq:WP_002543236.1
COORDINATES: similar to AA sequence:RefSeq:WP_002546271.1
type II secretion system F family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002519233.1
COORDINATES: similar to AA sequence:RefSeq:WP_002550903.1
COORDINATES: similar to AA sequence:RefSeq:WP_003527363.1
COORDINATES: similar to AA sequence:RefSeq:WP_002519236.1
COORDINATES: similar to AA sequence:RefSeq:WP_002527243.1
TadE/TadG family type IV pilus assembly protein
COORDINATES: similar to AA sequence:RefSeq:WP_002543756.1
LysM peptidoglycan-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002546682.1
COORDINATES: similar to AA sequence:RefSeq:WP_002525271.1
COORDINATES: similar to AA sequence:RefSeq:WP_002534226.1
COORDINATES: similar to AA sequence:RefSeq:WP_002519455.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002543484.1
COORDINATES: similar to AA sequence:RefSeq:WP_002524326.1
COORDINATES: similar to AA sequence:RefSeq:WP_002550419.1
COORDINATES: similar to AA sequence:RefSeq:WP_002543709.1
COORDINATES: similar to AA sequence:RefSeq:WP_002529686.1
COORDINATES: similar to AA sequence:RefSeq:WP_002542723.1
COORDINATES: similar to AA sequence:RefSeq:WP_002520147.1
COORDINATES: similar to AA sequence:RefSeq:WP_002529527.1
COORDINATES: protein motif:HMM:NF025001.2
COORDINATES: similar to AA sequence:RefSeq:WP_014053671.1
COORDINATES: similar to AA sequence:RefSeq:WP_002546822.1
COORDINATES: similar to AA sequence:RefSeq:WP_015011451.1
COORDINATES: similar to AA sequence:RefSeq:WP_002519906.1
COORDINATES: similar to AA sequence:RefSeq:WP_008598586.1
COORDINATES: similar to AA sequence:RefSeq:WP_002546827.1
COORDINATES: similar to AA sequence:RefSeq:WP_002546828.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612250.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008598590.1
COORDINATES: similar to AA sequence:RefSeq:WP_002546831.1
COORDINATES: similar to AA sequence:RefSeq:WP_008598593.1
COORDINATES: similar to AA sequence:RefSeq:WP_008598595.1
GO:0008490 - arsenite secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015011456.1
COORDINATES: similar to AA sequence:RefSeq:WP_009396705.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_006503549.1
arsenite efflux transporter metallochaperone ArsD
COORDINATES: similar to AA sequence:RefSeq:WP_008598606.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0015446 - ATPase-coupled arsenite transmembrane transporter activity [Evidence IEA]
GO:0071722 - detoxification of arsenic-containing substance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015069158.1
COORDINATES: similar to AA sequence:RefSeq:WP_002546840.1
COORDINATES: similar to AA sequence:RefSeq:WP_008598612.1
COORDINATES: similar to AA sequence:RefSeq:WP_002546817.1
COORDINATES: similar to AA sequence:RefSeq:WP_002546816.1
COORDINATES: similar to AA sequence:RefSeq:WP_008598614.1
COORDINATES: similar to AA sequence:RefSeq:WP_002546814.1
COORDINATES: similar to AA sequence:RefSeq:WP_002546813.1
COORDINATES: similar to AA sequence:RefSeq:WP_002546812.1
COORDINATES: similar to AA sequence:RefSeq:WP_002546811.1
COORDINATES: similar to AA sequence:RefSeq:WP_002546810.1
COORDINATES: similar to AA sequence:RefSeq:WP_002516805.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.